FvH4_3g23830

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000436
Physical Location & Seq
Reverse (-)
16907701 .. 16908078
378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23830.t1

Sequence Viewer

Length: 378 bp
ATGGGTTCAGATTCTCCATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCCAGAACTGGACCGAGGAACTGATGAGTGGTACCTTCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTGTGGTTGCTTCGAAATTGTGTATGATAAGATACCCCCGCAGTTAAGAGCCGAATTCTTCTTAGCGTCAAGAAAACTTTTCAGCCTTCCCCTTGAGACAAAGAAGAAGAACACTTATCCAAATCCTTACTCCGGTTACCTTGGACTGAGTGCTGTTGCTCCCTTGTACGAAAGCTTTGGCTTTGAAGAAGCATCCGACTATGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCGTGACGAGCTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000313 GO:0000462 GO:0000956 GO:0002164 GO:0002181 GO:0002182 GO:0002376 GO:0002520 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006414 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009547 GO:0009570 GO:0009790 GO:0009791 GO:0009792 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019222 GO:0019439 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0035166 GO:0035167 GO:0042254 GO:0042255 GO:0042274 GO:0042886 GO:0043009 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043253 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048513 GO:0048519 GO:0048534 GO:0048542 GO:0048569 GO:0048731 GO:0048732 GO:0048856 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N Ribosomal_S8e

Protein Analysis

126

Amino Acids

14.51

Weight (kDa)

4.57

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 25 - 90 5.7e-14 non-haem dioxygenase in morphine synthesis N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 1 cut(s) 161
AcsI RAATTY 3 cut(s) 38, 49, 176
AfaI GTAC 2 cut(s) 86, 290
AfiI CCNNNNNNNGG 2 cut(s) 28, 254
AgsI TTSAA 1 cut(s) 308
AluBI AGCT 3 cut(s) 297, 339, 370
AluI AGCT 3 cut(s) 297, 339, 370
Alw26I GTCTC 2 cut(s) 212, 363
ApoI RAATTY 3 cut(s) 38, 49, 176
Asp718I GGTACC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 64
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 84
BauI CACGAG 1 cut(s) 360
BcoDI GTCTC 2 cut(s) 212, 363
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 2 cut(s) 67, 262
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 254
Bse1I ACTGG 1 cut(s) 66
BseDI CCNNGG 2 cut(s) 67, 262
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 2 cut(s) 28, 254
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 29, 255
BslI CCNNNNNNNGG 2 cut(s) 28, 254
BsmAI GTCTC 2 cut(s) 212, 363
Bso31I GGTCTC 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 135
BspACI CCGC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 86
BspT104I TTCGAA 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 363
BsrI ACTGG 1 cut(s) 66
BssECI CCNNGG 2 cut(s) 67, 262
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 360
BstBI TTCGAA 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 184, 269, 332
BstEII GGTNACC 1 cut(s) 257
BstF5I GGATG 1 cut(s) 314
BstMAI GTCTC 2 cut(s) 212, 363
BstPI GGTNACC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 85, 289
CviJI RGCY 7 cut(s) 113, 173, 207, 297, 303, 339, 370
CviKI_1 RGCY 7 cut(s) 113, 173, 207, 297, 303, 339, 370
CviQI GTAC 2 cut(s) 85, 289
DdeI CTNAG 3 cut(s) 184, 269, 332
Eco130I CCWWGG 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 257
EcoRI GAATTC 3 cut(s) 38, 49, 176
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaiI YATR 4 cut(s) 19, 147, 324, 355
FauI CCCGC 1 cut(s) 168
FokI GGATG 1 cut(s) 301
HapII CCGG 2 cut(s) 29, 255
HgaI GACGC 1 cut(s) 177
HindIII AAGCTT 2 cut(s) 295, 337
HinfI GANTC 3 cut(s) 11, 25, 326
HpaII CCGG 2 cut(s) 29, 255
Hpy188I TCNGA 2 cut(s) 10, 319
Hpy188III TCNNGA 3 cut(s) 107, 192, 362
HpyAV CCTTC 3 cut(s) 94, 98, 218
HpyCH4V TGCA 1 cut(s) 96
HpyF3I CTNAG 3 cut(s) 184, 269, 332
KpnI GGTACC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 5 cut(s) 35, 42, 47, 69, 268
LweI GCATC 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 257, 362
MboII GAAGA 5 cut(s) 172, 238, 241, 320, 359
MluCI AATT 5 cut(s) 38, 49, 121, 138, 176
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 2 cut(s) 62, 103
MseI TTAA 1 cut(s) 167
MspI CCGG 2 cut(s) 29, 255
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 362
NspV TTCGAA 1 cut(s) 135
PfeI GAWTC 3 cut(s) 11, 25, 326
PspEI GGTNACC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 2 cut(s) 86, 290
RsaNI GTAC 2 cut(s) 85, 289
SaqAI TTAA 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 64
SetI ASST 6 cut(s) 90, 105, 264, 299, 341, 372
SfaNI GCATC 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 5 cut(s) 38, 49, 121, 138, 176
SsiI CCGC 1 cut(s) 161
StyI CCWWGG 1 cut(s) 262
TaqI TCGA 2 cut(s) 106, 135
TaqII GACCGA 1 cut(s) 81
TasI AATT 5 cut(s) 38, 49, 121, 138, 176
TfiI GAWTC 3 cut(s) 11, 25, 326
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 2 cut(s) 62, 339
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 3 cut(s) 38, 49, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.