Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

37437043 .. 37441192

Gene Structure 4150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG296900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTCAGTTATCGTGCGATTTTACGTTTCAGCCTTAATTTATGGTTACGTATAGTGATTTGTTTGTTTGTTTGTTCATTTTATATATGTTGCAACTGCAGCACTGTCATTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTAACTTGATGATTCTTGATAGCTATGGTTTGGAAGAGACATCAAATTTGATCATGGTGTCCAAGACACTGCTACGGTTACAGAAGTACACGGCACCTCCTTCAAGGGAGTACACCATGGGATCCCCGGCTCACACTGACAAGAATTTTGGCACAATCCTTTTTGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGATGAACAATGGGTCAAGTTGTCTATATCTCCTCGCTCTTTCGTCTTTGTTGTTGGAGACTCCCTCATGGCATGGAGCAATGGCAGAATGCATTCTGTGAATCATCGGGTGATGATGTGTGGGGAAAAAGAACGACATTCTTTAGCAGCATTTGCACTTCCAATAGAGGGTTCCATTATCAAGGCACAAAAGGAGCTAGTAGATGAAGACTACCCCCGTATTCTTAAAGATTTCGACTATACAGACTTTAGCAAGTTCATCTTTTCAGAAGGAAGAGCCATCGAATCACAAATGCAAGTTTTCGCATATGCTGGAATTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

224

Amino Acids

25.71

Weight (kDa)

6.1

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	74 - 168	3.5e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AclWI	GGATC	2 cut(s)	264, 277
AcsI	RAATTY	2 cut(s)	193, 292
AfaI	GTAC	2 cut(s)	236, 260
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	252, 335, 341
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	4 cut(s)	127, 136, 171, 544
AluI	AGCT	4 cut(s)	127, 136, 171, 544
Alw26I	GTCTC	2 cut(s)	179, 399
AlwI	GGATC	2 cut(s)	264, 277
ApeKI	GCWGC	3 cut(s)	99, 124, 494
ApoI	RAATTY	2 cut(s)	193, 292
ArsI	GACNNNNNNTTYG	4 cut(s)	178, 210, 278, 310
Asp700I	GAANNNNTTC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	111, 136, 506
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	1 cut(s)	255
BclI	TGATCA	2 cut(s)	198, 316
BcnI	CCSGG	1 cut(s)	275
BcoDI	GTCTC	2 cut(s)	179, 399
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	97
BisI	GCNGC	3 cut(s)	100, 125, 495
BlsI	GCNGC	3 cut(s)	101, 126, 496
Bme1390I	CCNGG	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	243, 271, 520
BmrFI	CCNGG	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpuMI	CCSGG	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	50
BsaJI	CCNNGG	3 cut(s)	264, 273, 345
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	433
BseDI	CCNNGG	3 cut(s)	264, 273, 345
BseGI	GGATG	2 cut(s)	136, 355
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	3 cut(s)	111, 136, 506
BshNI	GGYRCC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	2 cut(s)	179, 399
BsmI	GAATGC	2 cut(s)	439, 441
Bsp143I	GATC	3 cut(s)	198, 269, 316
Bsp19I	CCATGG	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	243, 271, 520
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	2 cut(s)	264, 277
BspQI	GCTCTTC	1 cut(s)	616
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	264, 273, 345
BssMI	GATC	3 cut(s)	198, 269, 316
BssT1I	CCWWGG	2 cut(s)	264, 345
Bst4CI	ACNGT	2 cut(s)	106, 225
Bst6I	CTCTTC	2 cut(s)	177, 616
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	50
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	2 cut(s)	136, 355
BstKTI	GATC	3 cut(s)	201, 272, 319
BstMAI	GTCTC	2 cut(s)	179, 399
BstMBI	GATC	3 cut(s)	198, 269, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 133, 500
BstSCI	CCNGG	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	97
BstSNI	TACGTA	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	111, 136, 506
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	136, 355
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	3 cut(s)	102, 215, 282
Csp6I	GTAC	2 cut(s)	235, 259
CviAII	CATG	4 cut(s)	202, 265, 415, 420
CviJI	RGCY	7 cut(s)	33, 127, 136, 171, 278, 544, 626
CviKI_1	RGCY	7 cut(s)	33, 127, 136, 171, 278, 544, 626
CviQI	GTAC	2 cut(s)	235, 259
DpnI	GATC	3 cut(s)	200, 271, 318
DpnII	GATC	3 cut(s)	198, 269, 316
Eam1104I	CTCTTC	2 cut(s)	177, 616
EarI	CTCTTC	2 cut(s)	177, 616
Eco105I	TACGTA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	264, 345
EcoT14I	CCWWGG	2 cut(s)	264, 345
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	2 cut(s)	264, 345
FaeI	CATG	4 cut(s)	205, 268, 418, 423
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	4 cut(s)	201, 264, 414, 419
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	2 cut(s)	198, 316
Fnu4HI	GCNGC	3 cut(s)	100, 125, 495
FokI	GGATG	2 cut(s)	143, 362
Fsp4HI	GCNGC	3 cut(s)	100, 125, 495
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	3 cut(s)	100, 125, 495
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	4 cut(s)	205, 268, 418, 423
HinfI	GANTC	4 cut(s)	160, 407, 448, 632
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	237, 261
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	2 cut(s)	164, 332
Hpy8I	GTNNAC	2 cut(s)	237, 261
HpyAV	CCTTC	2 cut(s)	258, 611
HpyCH4III	ACNGT	2 cut(s)	106, 225
HpyCH4IV	ACGT	2 cut(s)	25, 49
HpyCH4V	TGCA	5 cut(s)	93, 99, 439, 503, 643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 133, 500
HpySE526I	ACGT	2 cut(s)	25, 49
Hsp92II	CATG	4 cut(s)	205, 268, 418, 423
Ksp22I	TGATCA	2 cut(s)	198, 316
Kzo9I	GATC	3 cut(s)	198, 269, 316
LguI	GCTCTTC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	423, 541
LpnPI	CCDG	4 cut(s)	113, 288, 312, 645
Lsp1109I	GCAGC	3 cut(s)	111, 136, 506
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	25, 49
MaeIII	GTNAC	2 cut(s)	45, 225
MalI	GATC	3 cut(s)	200, 271, 318
MboI	GATC	3 cut(s)	198, 269, 316
MboII	GAAGA	3 cut(s)	194, 566, 633
MflI	RGATCY	1 cut(s)	269
MluCI	AATT	4 cut(s)	37, 193, 292, 663
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	4 cut(s)	255, 390, 422, 508
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	439
MseI	TTAA	3 cut(s)	36, 150, 573
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	275
Mva1269I	GAATGC	2 cut(s)	439, 441
MwoI	GCNNNNNNNGC	3 cut(s)	99, 133, 500
NciI	CCSGG	1 cut(s)	275
NcoI	CCATGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	198, 269, 316
NlaIII	CATG	4 cut(s)	205, 268, 418, 423
NlaIV	GGNNCC	3 cut(s)	243, 271, 520
NsiI	ATGCAT	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	616
PctI	GAATGC	2 cut(s)	439, 441
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	160, 448, 632
PkrI	GCNGC	3 cut(s)	101, 126, 496
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Ppu21I	YACGTR	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	243, 271, 520
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	236, 260
RsaNI	GTAC	2 cut(s)	235, 259
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	616
SaqAI	TTAA	3 cut(s)	36, 150, 573
SatI	GCNGC	3 cut(s)	100, 125, 495
Sau3AI	GATC	3 cut(s)	198, 269, 316
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	8 cut(s)	28, 52, 129, 138, 173, 247, 331, 546
SfcI	CTRYAG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	113
SnaBI	TACGTA	1 cut(s)	50
Sse9I	AATT	4 cut(s)	37, 193, 292, 663
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	2 cut(s)	264, 345
TaaI	ACNGT	2 cut(s)	106, 225
TaiI	ACGT	2 cut(s)	28, 52
TaqI	TCGA	2 cut(s)	582, 630
TasI	AATT	4 cut(s)	37, 193, 292, 663
TatI	WGTACW	2 cut(s)	234, 258
TfiI	GAWTC	3 cut(s)	160, 448, 632
Tru1I	TTAA	3 cut(s)	36, 150, 573
Tru9I	TTAA	3 cut(s)	36, 150, 573
TscAI	CASTG	3 cut(s)	109, 222, 289
TseI	GCWGC	3 cut(s)	99, 124, 494
TspDTI	ATGAA	5 cut(s)	66, 134, 366, 567, 595
TspRI	CASTG	3 cut(s)	109, 222, 289
XapI	RAATTY	2 cut(s)	193, 292
XmnI	GAANNNNTTC	1 cut(s)	439
XspI	CTAG	1 cut(s)	545
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.