Rorug04G0091800

Gibberellin 3-beta-dioxygenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
14164039 .. 14165942
1904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0091800.1

Sequence Viewer

Length: 858 bp
ATGGTTAAGATATATGCTGTAGTTTTGGTTATGTTCTTCAACATCTTGGTGGCCTCATCGGCTGGTAACTTCAACCAAGATTTTGATATAACATGGGGCGATGGGCGCGCCAAAATACTCAATAATGCGCAGCTACTCACGCTGTCCCTTGACAAGACTTCCGGGTCGGGGTTCAAGTCCAGGAATCAGTACCTGTTTGGAAAAATTGATATGCAGATTAAGCTCGTGCCTGGTAACTCCGCCGGTACCGTTACAGCTTACTATCTATCTTCGTTGGGGTCGACTCATGATGAAATAGACTTCGAGTTTCTTGGCAACCTAAGCGGAGATCCTTATATTCTACACACAAATGTTTTCACACAAGGCAAGGGAAATAGAGAGCAGCAATTTTATCTTTGGTTCGATCCCACCAAAGACTTCCACACCTACTCCGTCTTGTGGAACCCTCAAAGCATCATATTCTCTGTCGATGGCACACCTATTCGAGAGTTCAAGAATTTAGGATCGAGGGGAATCCCATTCCCAAAGAACCAAGCAATGTGGATCTACTCAAGCCTTTGGAACGCAGATGACTGGGCGACACGCGGTGGACTTGTGAAGACAGACTGGAGTAAAGCTCCATTCACAGCCTCGTACAGAAACTTTAACGCCCAAGCATGCATTTGGTCTTCTGGTTCTTCCTCTTGTTCTTCTTCTCCTTCTAGTTCTTCAAAAGAGGCATGGTTCACCCAATCATTGGATGCCACAGGGAAAGGAAGAATAAATTGGGTTCAAAAGAACTATATGATCTACAACTATTGCAAGGATACCAAGCGCTTCCCACAGGGACTTCCTCTTGAATGCACAGTAGTTAATTGA

Protein Analysis

285

Amino Acids

32.02

Weight (kDa)

8.76

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 24 - 205 1.1e-66 Glycosyl hydrolases family 16
XET_C PF06955 237 - 281 4.9e-21 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
Acc16I TGCGCA 1 cut(s) 129
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 736
AccI GTMKAC 1 cut(s) 281
AccII CGCG 2 cut(s) 108, 585
AciI CCGC 3 cut(s) 240, 324, 585
AclWI GGATC 4 cut(s) 323, 398, 511, 551
AcsI RAATTY 1 cut(s) 496
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 3 cut(s) 191, 247, 635
AfeI AGCGCT 1 cut(s) 815
AfiI CCNNNNNNNGG 3 cut(s) 168, 438, 736
AgsI TTSAA 7 cut(s) 40, 73, 175, 493, 711, 773, 839
AjnI CCWGG 2 cut(s) 179, 229
AjuI GAANNNNNNNTTGG 2 cut(s) 748, 780
AluBI AGCT 4 cut(s) 133, 223, 257, 617
AluI AGCT 4 cut(s) 133, 223, 257, 617
AlwI GGATC 4 cut(s) 323, 398, 511, 551
AlwNI CAGNNNCTG 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 815
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 130, 382
ApoI RAATTY 1 cut(s) 496
AscI GGCGCGCC 1 cut(s) 106
Asp718I GGTACC 1 cut(s) 245
AspLEI GCGC 4 cut(s) 108, 110, 130, 816
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 718
BanI GGYRCC 1 cut(s) 245
BauI CACGAG 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 605, 660
BbvI GCAGC 2 cut(s) 142, 394
BccI CCATC 2 cut(s) 95, 464
BciT130I CCWGG 2 cut(s) 181, 231
BciVI GTATCC 1 cut(s) 799
BcnI CCSGG 1 cut(s) 163
BfaI CTAG 1 cut(s) 702
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 817
BfuI GTATCC 1 cut(s) 799
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 2 cut(s) 131, 383
BlsI GCNGC 2 cut(s) 132, 384
Bme1390I CCNGG 3 cut(s) 163, 181, 231
BmiI GGNNCC 2 cut(s) 247, 443
BmrFI CCNGG 3 cut(s) 163, 181, 231
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 2 cut(s) 462, 730
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 2 cut(s) 605, 660
BplI GAGNNNNNCTC 2 cut(s) 601, 633
BpmI CTGGAG 1 cut(s) 628
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 535
BpuMI CCSGG 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 438, 736
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 578, 611
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 181, 231
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 3 cut(s) 168, 438, 736
BseMI GCAATG 1 cut(s) 543
BseNI ACTGG 2 cut(s) 578, 611
BsePI GCGCGC 1 cut(s) 106
BseXI GCAGC 2 cut(s) 142, 394
Bsh1236I CGCG 2 cut(s) 108, 585
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 162, 243
BslFI GGGAC 2 cut(s) 130, 840
BslI CCNNNNNNNGG 3 cut(s) 168, 438, 736
BsmFI GGGAC 2 cut(s) 130, 840
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 5 cut(s) 328, 403, 503, 543, 786
BspACI CCGC 3 cut(s) 240, 324, 585
BspANI GGCC 1 cut(s) 53
BspFNI CGCG 2 cut(s) 108, 585
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 247, 443
BspPI GGATC 4 cut(s) 323, 398, 511, 551
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 578, 611
BssAI RCCGGY 1 cut(s) 242
BssHII GCGCGC 1 cut(s) 106
BssMI GATC 5 cut(s) 328, 403, 503, 543, 786
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 2 cut(s) 181, 231
Bst4CI ACNGT 2 cut(s) 250, 847
BstC8I GCNNGC 2 cut(s) 108, 658
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 745
BstFNI CGCG 2 cut(s) 108, 585
BstH2I RGCGCY 1 cut(s) 817
BstHHI GCGC 4 cut(s) 108, 110, 130, 816
BstKTI GATC 5 cut(s) 331, 406, 506, 546, 789
BstMBI GATC 5 cut(s) 328, 403, 503, 543, 786
BstMWI GCNNNNNNNGC 5 cut(s) 59, 105, 139, 220, 321
BstNI CCWGG 2 cut(s) 181, 231
BstNSI RCATGY 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 161, 179, 229
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 2 cut(s) 108, 585
BstV1I GCAGC 2 cut(s) 142, 394
BstV2I GAAGAC 2 cut(s) 605, 660
BstX2I RGATCY 2 cut(s) 328, 543
BstYI RGATCY 2 cut(s) 328, 543
BsuI GTATCC 1 cut(s) 799
BsuRI GGCC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 108, 658
CaiI CAGNNNCTG 1 cut(s) 193
CciI TCATGA 1 cut(s) 286
CfoI GCGC 4 cut(s) 108, 110, 130, 816
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 3 cut(s) 190, 246, 634
CspCI CAANNNNNGTGG 2 cut(s) 521, 556
CviAII CATG 4 cut(s) 93, 287, 657, 720
CviJI RGCY 8 cut(s) 53, 62, 133, 223, 257, 555, 617, 629
CviKI_1 RGCY 8 cut(s) 53, 62, 133, 223, 257, 555, 617, 629
CviQI GTAC 3 cut(s) 190, 246, 634
DdeI CTNAG 1 cut(s) 320
DpnI GATC 5 cut(s) 330, 405, 505, 545, 788
DpnII GATC 5 cut(s) 328, 403, 503, 543, 786
DraIII CACNNNGTG 1 cut(s) 587
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
EciI GGCGGA 1 cut(s) 229
Eco47III AGCGCT 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 179, 229
EcoT22I ATGCAT 1 cut(s) 662
FaeI CATG 4 cut(s) 96, 290, 660, 723
FaqI GGGAC 2 cut(s) 130, 840
FatI CATG 4 cut(s) 92, 286, 656, 719
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 2 cut(s) 131, 383
FokI GGATG 1 cut(s) 752
Fsp4HI GCNGC 2 cut(s) 131, 383
FspBI CTAG 1 cut(s) 702
FspI TGCGCA 1 cut(s) 129
GlaI GCGC 4 cut(s) 107, 109, 129, 815
GluI GCNGC 2 cut(s) 131, 383
GsuI CTGGAG 1 cut(s) 628
HaeII RGCGCY 1 cut(s) 817
HaeIII GGCC 1 cut(s) 53
HapII CCGG 2 cut(s) 162, 243
HhaI GCGC 4 cut(s) 108, 110, 130, 816
Hin1II CATG 4 cut(s) 96, 290, 660, 723
Hin6I GCGC 4 cut(s) 106, 108, 128, 814
HinP1I GCGC 4 cut(s) 106, 108, 128, 814
HincII GTYRAC 1 cut(s) 282
HindII GTYRAC 1 cut(s) 282
HinfI GANTC 3 cut(s) 184, 283, 513
HpaII CCGG 2 cut(s) 162, 243
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 3 cut(s) 282, 590, 726
Hpy188III TCNNGA 4 cut(s) 287, 485, 493, 836
Hpy8I GTNNAC 3 cut(s) 282, 590, 726
HpyAV CCTTC 1 cut(s) 708
HpyCH4III ACNGT 2 cut(s) 250, 847
HpyCH4V TGCA 4 cut(s) 214, 660, 801, 843
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 105, 139, 220, 321
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 4 cut(s) 96, 290, 660, 723
HspAI GCGC 4 cut(s) 106, 108, 128, 814
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 5 cut(s) 328, 403, 503, 543, 786
LmnI GCTCC 1 cut(s) 622
Lsp1109I GCAGC 2 cut(s) 142, 394
LweI GCATC 2 cut(s) 462, 730
MaeI CTAG 1 cut(s) 702
MaeIII GTNAC 3 cut(s) 65, 233, 250
MalI GATC 5 cut(s) 330, 405, 505, 545, 788
MboI GATC 5 cut(s) 328, 403, 503, 543, 786
MboII GAAGA 9 cut(s) 28, 261, 610, 660, 669, 681, 684, 699, 768
MflI RGATCY 2 cut(s) 328, 543
MluCI AATT 5 cut(s) 204, 386, 496, 763, 853
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 7 cut(s) 64, 456, 501, 640, 691, 709, 843
Mph1103I ATGCAT 1 cut(s) 662
MseI TTAA 4 cut(s) 6, 219, 645, 852
MslI CAYNNNNRTG 2 cut(s) 47, 348
MspI CCGG 2 cut(s) 162, 243
MspR9I CCNGG 3 cut(s) 163, 181, 231
Mva1269I GAATGC 1 cut(s) 845
MvaI CCWGG 2 cut(s) 181, 231
MvnI CGCG 2 cut(s) 108, 585
MwoI GCNNNNNNNGC 5 cut(s) 59, 105, 139, 220, 321
NciI CCSGG 1 cut(s) 163
NdeII GATC 5 cut(s) 328, 403, 503, 543, 786
NlaIII CATG 4 cut(s) 96, 290, 660, 723
NlaIV GGNNCC 2 cut(s) 247, 443
NsbI TGCGCA 1 cut(s) 129
NsiI ATGCAT 1 cut(s) 662
NspI RCATGY 1 cut(s) 660
PaeI GCATGC 1 cut(s) 660
PagI TCATGA 1 cut(s) 286
PalAI GGCGCGCC 1 cut(s) 106
PauI GCGCGC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PctI GAATGC 1 cut(s) 845
PfeI GAWTC 2 cut(s) 184, 513
PflMI CCANNNNNTGG 1 cut(s) 736
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 2 cut(s) 132, 384
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
Psp6I CCWGG 2 cut(s) 179, 229
PspGI CCWGG 2 cut(s) 179, 229
PspN4I GGNNCC 2 cut(s) 247, 443
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 328, 543
PteI GCGCGC 1 cut(s) 106
RsaI GTAC 3 cut(s) 191, 247, 635
RsaNI GTAC 3 cut(s) 190, 246, 634
RseI CAYNNNNRTG 2 cut(s) 47, 348
SalI GTCGAC 1 cut(s) 280
SaqAI TTAA 4 cut(s) 6, 219, 645, 852
SatI GCNGC 2 cut(s) 131, 383
Sau3AI GATC 5 cut(s) 328, 403, 503, 543, 786
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 3 cut(s) 163, 181, 231
SetI ASST 8 cut(s) 135, 195, 225, 259, 321, 428, 481, 619
SfaNI GCATC 2 cut(s) 462, 730
SfcI CTRYAG 1 cut(s) 18
SgsI GGCGCGCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 47, 348
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
SphI GCATGC 1 cut(s) 660
Sse9I AATT 5 cut(s) 204, 386, 496, 763, 853
SsiI CCGC 3 cut(s) 240, 324, 585
SspMI CTAG 1 cut(s) 702
StyD4I CCNGG 3 cut(s) 161, 179, 229
TaaI ACNGT 2 cut(s) 250, 847
TaqI TCGA 6 cut(s) 281, 303, 402, 468, 484, 506
TasI AATT 5 cut(s) 204, 386, 496, 763, 853
TfiI GAWTC 2 cut(s) 184, 513
Tru1I TTAA 4 cut(s) 6, 219, 645, 852
Tru9I TTAA 4 cut(s) 6, 219, 645, 852
TseI GCWGC 2 cut(s) 130, 382
TspDTI ATGAA 1 cut(s) 306
TspGWI ACGGA 1 cut(s) 421
Van91I CCANNNNNTGG 1 cut(s) 736
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 660
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.