Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

29757740 .. 29760765

Gene Structure 3026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G012650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTCTGATTGTCAATACCAGATTCCTACCATAGATTTCTCAATCCATTCACTGGAAGTAGACCGAGGAACCGAAGAGTGGTACAGTTTGTGCAAGAGAGTTAGAGAGGCTTGTGAAAACAATGGTTTCTTTGAAATAGTGTATGATAAGATACCTCTGCAGTTAAGAGCAGAGACCTTCTCTATGGTAAGGCAACTCTTCAGCCTTCCTCTGGAGACAAAGAAGAACTATTTTAGTTCAAGGCCTTATGGCGGTTACCTTGGACAGAATCCGAAACTTCCCTTGTTTGAGAGCTTTGGCCTTGAAGATCCCTCCAACTATGAATCCCTCAGAAGCTTCACACGACTCATGTGGCCTAATGGCCATGACAAGTTTTGCAACACTGTAATTTCTATGGTGAACAAGTTGGATGACCTGAAGCATATGATTGAAGTGATGATTCTTGATAGTTATGGTTTGGGAGAGAAGTCAAAATCGATCATGGCATCTATGACACTGCTAAGGATAATGAAATACAGCCCACCTCCTTCTGGGGAATCCATGCAGGGGCTCCATGCTCACACAGACAAAGCCCTTAGCACAATTCTTTGTGATGATCAAGTTTCAGGGCTGGAAATCGAAACAAAGGATGGACAATGGATCAAGCTTTCTTTCTCTCCTACCTCCTTGGTCTTTGTCGTTGGAGATCTCCTTATGGCCTGGAGTAATGGCAGAATGCATCCTGCAAAGCATCGAGTGATGATGAGTGGAGAGAAGGAACGATATTCTTTGGGACAATTTGTAGATCCAGTAGAAGGTACCATCATCAAAGCACCAAAGGAGCTAGTAGATGAAGAACATCCCCGTATTCTTGAGGACTTTGACTATTCGAAATTTAGCAAGTTCTTCTACTCAGAGGAAGGAAAGGCTGTCGACACAGAAATGCAGATTTTCGCATTTGCTGGGATTATAAGTGGATTTAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

323

Amino Acids

36.86

Weight (kDa)

5.38

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 89	1.4e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	168 - 264	1e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
Acc65I	GGTACC	1 cut(s)	800
AccB1I	GGYRCC	1 cut(s)	800
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccI	GTMKAC	2 cut(s)	63, 915
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	3 cut(s)	305, 650, 782
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	875
AcuI	CTGAAG	2 cut(s)	187, 440
AfaI	GTAC	2 cut(s)	86, 802
AfiI	CCNNNNNNNGG	7 cut(s)	55, 81, 214, 254, 533, 549, 797
AgsI	TTSAA	4 cut(s)	137, 243, 308, 434
AjnI	CCWGG	1 cut(s)	701
AluBI	AGCT	4 cut(s)	297, 339, 649, 826
AluI	AGCT	4 cut(s)	297, 339, 649, 826
Alw26I	GTCTC	2 cut(s)	170, 212
AlwI	GGATC	3 cut(s)	305, 650, 782
AoxI	GGCC	5 cut(s)	245, 301, 356, 364, 699
ApoI	RAATTY	1 cut(s)	875
Asp718I	GGTACC	1 cut(s)	800
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	872
BalI	TGGCCA	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	555
BccI	CCATC	2 cut(s)	626, 812
BciT130I	CCWGG	1 cut(s)	703
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	170, 212
BfaI	CTAG	1 cut(s)	827
BfmI	CTRYAG	1 cut(s)	161
BglII	AGATCT	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	703
BmiI	GGNNCC	3 cut(s)	73, 554, 802
BmrFI	CCNGG	1 cut(s)	703
BmsI	GCATC	3 cut(s)	497, 730, 742
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	2 cut(s)	236, 724
Bpu10I	CCTNAGC	2 cut(s)	503, 578
Bpu14I	TTCGAA	1 cut(s)	872
BpuEI	CTTGAG	1 cut(s)	875
Bsa29I	ATCGAT	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	67, 262, 669
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 81, 214, 254, 533, 549, 797
Bse1I	ACTGG	2 cut(s)	60, 791
BseBI	CCWGG	1 cut(s)	703
BseCI	ATCGAT	1 cut(s)	479
BseDI	CCNNGG	3 cut(s)	67, 262, 669
BseGI	GGATG	4 cut(s)	418, 637, 721, 841
BseLI	CCNNNNNNNGG	7 cut(s)	55, 81, 214, 254, 533, 549, 797
BseMII	CTCAG	2 cut(s)	346, 909
BseNI	ACTGG	2 cut(s)	60, 791
BseYI	CCCAGC	1 cut(s)	944
BshFI	GGCC	5 cut(s)	247, 303, 358, 366, 701
BshNI	GGYRCC	1 cut(s)	800
BshVI	ATCGAT	1 cut(s)	479
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	7 cut(s)	55, 81, 214, 254, 533, 549, 797
BsmAI	GTCTC	2 cut(s)	170, 212
BsmFI	GGGAC	1 cut(s)	789
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	5 cut(s)	247, 303, 358, 366, 701
Bso31I	GGTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp143I	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	5 cut(s)	247, 303, 358, 366, 701
BspCNI	CTCAG	2 cut(s)	345, 908
BspDI	ATCGAT	1 cut(s)	479
BspLI	GGNNCC	3 cut(s)	73, 554, 802
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	305, 650, 782
BspT104I	TTCGAA	1 cut(s)	872
BspT107I	GGYRCC	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	60, 791
BssECI	CCNNGG	3 cut(s)	67, 262, 669
BssMI	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
BssT1I	CCWWGG	2 cut(s)	262, 669
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	2 cut(s)	89, 388
Bst6I	CTCTTC	2 cut(s)	72, 206
BstBI	TTCGAA	1 cut(s)	872
BstDEI	CTNAG	4 cut(s)	332, 503, 578, 895
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	4 cut(s)	418, 637, 721, 841
BstKTI	GATC	6 cut(s)	313, 483, 601, 645, 691, 790
BstMAI	GTCTC	2 cut(s)	170, 212
BstMBI	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
BstNI	CCWGG	1 cut(s)	703
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	701
BstSFI	CTRYAG	1 cut(s)	161
BstX2I	RGATCY	3 cut(s)	310, 688, 787
BstYI	RGATCY	3 cut(s)	310, 688, 787
Bsu15I	ATCGAT	1 cut(s)	479
BsuRI	GGCC	5 cut(s)	247, 303, 358, 366, 701
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	4 cut(s)	418, 637, 721, 841
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	3 cut(s)	53, 384, 497
ClaI	ATCGAT	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	85, 801
CviAII	CATG	5 cut(s)	352, 368, 484, 544, 557
CviQI	GTAC	2 cut(s)	85, 801
DdeI	CTNAG	4 cut(s)	332, 503, 578, 895
DpnI	GATC	6 cut(s)	312, 482, 600, 644, 690, 789
DpnII	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
DraI	TTTAAA	1 cut(s)	964
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	72, 206
EarI	CTCTTC	2 cut(s)	72, 206
Eco130I	CCWWGG	2 cut(s)	262, 669
Eco147I	AGGCCT	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	187, 440
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	2 cut(s)	262, 669
EcoT22I	ATGCAT	1 cut(s)	723
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	2 cut(s)	262, 669
FaeI	CATG	5 cut(s)	355, 371, 487, 547, 560
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	5 cut(s)	351, 367, 483, 543, 556
FauNDI	CATATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	598
FblI	GTMKAC	2 cut(s)	63, 915
FokI	GGATG	4 cut(s)	425, 644, 708, 828
FriOI	GRGCYC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	827
GsaI	CCCAGC	1 cut(s)	948
GsuI	CTGGAG	2 cut(s)	236, 724
HaeIII	GGCC	5 cut(s)	247, 303, 358, 366, 701
Hin1II	CATG	5 cut(s)	355, 371, 487, 547, 560
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HindIII	AAGCTT	2 cut(s)	337, 647
HinfI	GANTC	6 cut(s)	25, 271, 326, 348, 442, 539
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	3 cut(s)	64, 403, 916
Hpy188I	TCNGA	4 cut(s)	10, 276, 335, 898
Hpy188III	TCNNGA	3 cut(s)	215, 446, 854
Hpy8I	GTNNAC	3 cut(s)	64, 403, 916
HpyAV	CCTTC	6 cut(s)	190, 218, 540, 751, 791, 896
HpyCH4III	ACNGT	2 cut(s)	89, 388
HpyCH4V	TGCA	7 cut(s)	96, 163, 381, 547, 721, 728, 928
HpyF3I	CTNAG	4 cut(s)	332, 503, 578, 895
Hsp92II	CATG	5 cut(s)	355, 371, 487, 547, 560
KpnI	GGTACC	1 cut(s)	804
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
LmnI	GCTCC	2 cut(s)	558, 823
LweI	GCATC	3 cut(s)	497, 730, 742
MaeI	CTAG	1 cut(s)	827
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	6 cut(s)	312, 482, 600, 644, 690, 789
MboI	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
MboII	GAAGA	6 cut(s)	89, 193, 238, 320, 848, 880
MflI	RGATCY	3 cut(s)	310, 688, 787
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	4 cut(s)	390, 585, 779, 875
MluNI	TGGCCA	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	3 cut(s)	342, 390, 664
Mox20I	TGGCCA	1 cut(s)	366
Mph1103I	ATGCAT	1 cut(s)	723
MscI	TGGCCA	1 cut(s)	366
MseI	TTAA	2 cut(s)	167, 963
MslI	CAYNNNNRTG	1 cut(s)	923
Msp20I	TGGCCA	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	703
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	703
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
NlaIII	CATG	5 cut(s)	355, 371, 487, 547, 560
NlaIV	GGNNCC	3 cut(s)	73, 554, 802
NsiI	ATGCAT	1 cut(s)	723
NspV	TTCGAA	1 cut(s)	872
PceI	AGGCCT	1 cut(s)	247
PctI	GAATGC	1 cut(s)	723
PfeI	GAWTC	5 cut(s)	25, 271, 326, 442, 539
PflMI	CCANNNNNTGG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	953
Psp6I	CCWGG	1 cut(s)	701
PspEI	GGTNACC	1 cut(s)	257
PspFI	CCCAGC	1 cut(s)	944
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	3 cut(s)	73, 554, 802
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	3 cut(s)	310, 688, 787
RsaI	GTAC	2 cut(s)	86, 802
RsaNI	GTAC	2 cut(s)	85, 801
RseI	CAYNNNNRTG	1 cut(s)	923
SalI	GTCGAC	1 cut(s)	914
SaqAI	TTAA	2 cut(s)	167, 963
Sau3AI	GATC	6 cut(s)	310, 480, 598, 642, 688, 787
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	1 cut(s)	555
SfaNI	GCATC	3 cut(s)	497, 730, 742
SfcI	CTRYAG	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	872
SmiMI	CAYNNNNRTG	1 cut(s)	923
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	4 cut(s)	390, 585, 779, 875
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	827
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	2 cut(s)	262, 669
TaaI	ACNGT	2 cut(s)	89, 388
TaqI	TCGA	5 cut(s)	479, 621, 736, 872, 915
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	390, 585, 779, 875
TfiI	GAWTC	5 cut(s)	25, 271, 326, 442, 539
Tru1I	TTAA	2 cut(s)	167, 963
Tru9I	TTAA	2 cut(s)	167, 963
TscAI	CASTG	3 cut(s)	60, 391, 504
TspDTI	ATGAA	3 cut(s)	339, 527, 849
TspRI	CASTG	3 cut(s)	60, 391, 504
Van91I	CCANNNNNTGG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	875
XmiI	GTMKAC	2 cut(s)	63, 915
XspI	CTAG	1 cut(s)	827
Zsp2I	ATGCAT	1 cut(s)	723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.