Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

54717564 .. 54718482

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTAAGGCACCTTTTCAGCCTTCCTGTTCAGATCAAGCAGAAGAATATGAATCCAAAGCCTTTACCATGGTTACTTTGGGCAATATGCAAGTATTCCCTTTCAGACTGTAGAATTCATATGATAAAGCAGCTGGATGAGCTTAAGGATATGATTGAACTGATGATTCTTGATAGTTATGGTTTAGGAGAGAAATTGAATTCAATCATGGTATGTAAAACACTGCTTCAAATAATGAAATACAGCTCACCTCCATCTGGGGAGTACATGCAGGGGATCCATGCTGACAATGACAAGGCATGGAGCAATGGGAGAATGCATCCAGTGAATCATCGAGTGAAGATGTGTGGAGAAAACGAAAGATATTCTTTAGGAGCATTTGCAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTGGTAGATGAAGAACATCCCCAAATTATATGCAATTTTTTTATTTCTCCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

159

Amino Acids

18.27

Weight (kDa)

7.67

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	3 cut(s)	9, 398, 412
AclWI	GGATC	2 cut(s)	271, 284
AcsI	RAATTY	2 cut(s)	114, 199
AfaI	GTAC	2 cut(s)	266, 400
AfiI	CCNNNNNNNGG	2 cut(s)	257, 395
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	158, 199, 204, 230
AluBI	AGCT	3 cut(s)	133, 142, 246
AluI	AGCT	3 cut(s)	133, 142, 246
AlwI	GGATC	2 cut(s)	271, 284
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	114, 199
Asp718I	GGTACC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	276
BanI	GGYRCC	3 cut(s)	9, 398, 412
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	262, 410
BfmI	CTRYAG	1 cut(s)	109
BfrI	CTTAAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmiI	GGNNCC	4 cut(s)	11, 278, 400, 414
BmsI	GCATC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 395
Bse1I	ACTGG	2 cut(s)	323, 389
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	3 cut(s)	142, 319, 439
BseLI	CCNNNNNNNGG	2 cut(s)	257, 395
BseMI	GCAATG	1 cut(s)	313
BseNI	ACTGG	2 cut(s)	323, 389
BseXI	GCAGC	1 cut(s)	142
BshNI	GGYRCC	3 cut(s)	9, 398, 412
BslI	CCNNNNNNNGG	2 cut(s)	257, 395
BsmI	GAATGC	1 cut(s)	321
Bsp143I	GATC	2 cut(s)	33, 276
Bsp19I	CCATGG	1 cut(s)	68
BspLI	GGNNCC	4 cut(s)	11, 278, 400, 414
BspPI	GGATC	2 cut(s)	271, 284
BspT107I	GGYRCC	3 cut(s)	9, 398, 412
BspTI	CTTAAG	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	323, 389
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	2 cut(s)	33, 276
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	110
BstAFI	CTTAAG	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	142, 319, 439
BstKTI	GATC	2 cut(s)	36, 279
BstMBI	GATC	2 cut(s)	33, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	3 cut(s)	142, 319, 439
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	221, 330
Csp6I	GTAC	2 cut(s)	265, 399
CviAII	CATG	5 cut(s)	69, 208, 268, 281, 300
CviJI	RGCY	5 cut(s)	21, 61, 133, 142, 246
CviKI_1	RGCY	5 cut(s)	21, 61, 133, 142, 246
CviQI	GTAC	2 cut(s)	265, 399
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	2 cut(s)	35, 278
DpnII	GATC	2 cut(s)	33, 276
Eco130I	CCWWGG	1 cut(s)	68
EcoRI	GAATTC	2 cut(s)	114, 199
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	5 cut(s)	72, 211, 271, 284, 303
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FatI	CATG	5 cut(s)	68, 207, 267, 280, 299
FauNDI	CATATG	1 cut(s)	120
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	3 cut(s)	149, 306, 426
Fsp4HI	GCNGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	131
Hin1II	CATG	5 cut(s)	72, 211, 271, 284, 303
HinfI	GANTC	3 cut(s)	52, 166, 328
HphI	GGTGA	1 cut(s)	240
Hpy188I	TCNGA	2 cut(s)	33, 106
Hpy188III	TCNNGA	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	5 cut(s)	90, 271, 319, 383, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	477
Hsp92II	CATG	5 cut(s)	72, 211, 271, 284, 303
KpnI	GGTACC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	33, 276
LmnI	GCTCC	2 cut(s)	303, 374
LpnPI	CCDG	6 cut(s)	39, 119, 243, 257, 336, 402
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	2 cut(s)	35, 278
MboI	GATC	2 cut(s)	33, 276
MboII	GAAGA	3 cut(s)	55, 352, 446
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	5 cut(s)	114, 194, 199, 447, 457
MnlI	CCTC	2 cut(s)	261, 388
Mph1103I	ATGCAT	1 cut(s)	321
MseI	TTAA	2 cut(s)	5, 144
MspA1I	CMGCKG	1 cut(s)	133
MspCI	CTTAAG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	68
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	2 cut(s)	33, 276
NlaIII	CATG	5 cut(s)	72, 211, 271, 284, 303
NlaIV	GGNNCC	4 cut(s)	11, 278, 400, 414
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	1 cut(s)	271
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	52, 166, 328
PkrI	GCNGC	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	11, 278, 400, 414
PsuI	RGATCY	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	266, 400
RsaNI	GTAC	2 cut(s)	265, 399
SaqAI	TTAA	2 cut(s)	5, 144
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	33, 276
SetI	ASST	5 cut(s)	15, 135, 144, 248, 253
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	114, 194, 199, 447, 457
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	334
TasI	AATT	5 cut(s)	114, 194, 199, 447, 457
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	52, 166, 328
Tru1I	TTAA	2 cut(s)	5, 144
Tru9I	TTAA	2 cut(s)	5, 144
TscAI	CASTG	2 cut(s)	228, 330
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	4 cut(s)	65, 107, 251, 447
TspRI	CASTG	2 cut(s)	228, 330
Vha464I	CTTAAG	1 cut(s)	143
XapI	RAATTY	2 cut(s)	114, 199
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.