Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

85683988 .. 85685459

Gene Structure 1472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATGAATTTGCTTGAAGTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGTCAAAAGCCGAAACCCTCTCGGCTTCAAGGAAACTTTACAGCCTTCCACTTGAGACAAAGAAGAACAACCTTAATCCAAACCGTTACCAGGGTTACGTTGGACCGAGTGTCACTGCTCCCTTGTATGAAGGCTTTGGCTTTATGGAAGCATCTAACTATGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCATGACCAGTTTTGCATTGTCCTTTCTGTAATGAAGCAGCTGGATAAGCTGAAATATATGATTCACTTGATGATTCTTGATAGCTATGGTTTGGAAGAATCATCAAATTTGATCATGGTGCTGTCTAAGACGCTGCTACGGTTACAGAAGTACACGGCATGTCCTTCAGGGGAGTACACGACGGGTATCCCGGCTCACACTGACAAGACTTTTGGCACAATACTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGATGAAGAATGGGTCAAGTTGCCCATATCTCCTTGCTCTTTCATCTTTGTTGTTGGAGACTTCCTCATGGCATGGAGCAGTGGCAGAATGCCATCTGTGAAGCATCGGGTGATGACGTGTGGGGGAAAAGATCGATATTCCTTAACAGCATCTGCACTTCCAATAGAGGGTTCCCTCATCAAAGCACAAAAGGAGCTAGTAGATGAAGACTACCCACAAATTCTTAAAGATTTCGACTATAAAGAATTTTTCAAGTTCATCTGTTCATCAGAAGGAAGAGCCATCGACTCACAAATGCAAGTTTACGCATTTGCTGGAATTGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

318

Amino Acids

36.02

Weight (kDa)

5.12

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	24 - 90	9.8e-12	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	165 - 257	3.6e-21	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AciI	CCGC	1 cut(s)	161
AcsI	RAATTY	5 cut(s)	38, 49, 466, 843, 869
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	86, 512, 536
AfiI	CCNNNNNNNGG	3 cut(s)	28, 253, 791
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	5 cut(s)	59, 192, 611, 617, 877
AhdI	GACNNNNNGTC	1 cut(s)	272
AjiI	CACGTC	1 cut(s)	741
AjnI	CCWGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	5 cut(s)	339, 400, 409, 444, 820
AluI	AGCT	5 cut(s)	339, 400, 409, 444, 820
Alw26I	GTCTC	3 cut(s)	212, 363, 675
AlwNI	CAGNNNCTG	1 cut(s)	776
ApeKI	GCWGC	2 cut(s)	397, 493
ApoI	RAATTY	5 cut(s)	38, 49, 466, 843, 869
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 266
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	837
BbvI	GCAGC	2 cut(s)	409, 480
BccI	CCATC	3 cut(s)	96, 724, 914
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	557
BclI	TGATCA	2 cut(s)	471, 592
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	3 cut(s)	212, 363, 675
BfaI	CTAG	1 cut(s)	821
BfuI	GTATCC	1 cut(s)	557
BisI	GCNGC	2 cut(s)	398, 494
BlsI	GCNGC	2 cut(s)	399, 495
Bme1390I	CCNGG	2 cut(s)	254, 551
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	2 cut(s)	86, 796
BmrFI	CCNGG	2 cut(s)	254, 551
BmsI	GCATC	3 cut(s)	323, 736, 782
BpiI	GAAGAC	1 cut(s)	837
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	551
Bsa29I	ATCGAT	1 cut(s)	757
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	3 cut(s)	67, 253, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 253, 791
Bse1I	ACTGG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	757
BseDI	CCNNGG	3 cut(s)	67, 253, 621
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	3 cut(s)	28, 253, 791
BseNI	ACTGG	1 cut(s)	367
BseXI	GCAGC	2 cut(s)	409, 480
BsgI	GTGCAG	1 cut(s)	762
BshNI	GGYRCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	757
BsiSI	CCGG	2 cut(s)	29, 551
BslI	CCNNNNNNNGG	3 cut(s)	28, 253, 791
BsmAI	GTCTC	3 cut(s)	212, 363, 675
BsmI	GAATGC	1 cut(s)	717
Bso31I	GGTCTC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	471, 592, 754
BspACI	CCGC	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	757
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	86, 796
BspQI	GCTCTTC	1 cut(s)	895
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	67, 253, 621
BssMI	GATC	3 cut(s)	471, 592, 754
BssT1I	CCWWGG	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	248, 501
Bst6I	CTCTTC	1 cut(s)	895
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	332, 486
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	3 cut(s)	474, 595, 757
BstMAI	GTCTC	3 cut(s)	212, 363, 675
BstMBI	GATC	3 cut(s)	471, 592, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	2 cut(s)	252, 549
BstV1I	GCAGC	2 cut(s)	409, 480
BstV2I	GAAGAC	1 cut(s)	837
Bsu15I	ATCGAT	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	557
BsuTUI	ATCGAT	1 cut(s)	757
BtrI	CACGTC	1 cut(s)	741
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	2 cut(s)	276, 709
BtsIMutI	CAGTG	3 cut(s)	276, 558, 709
CaiI	CAGNNNCTG	1 cut(s)	776
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	64, 266
ClaI	ATCGAT	1 cut(s)	757
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	85, 511, 535
CviAII	CATG	5 cut(s)	362, 475, 519, 691, 696
CviQI	GTAC	3 cut(s)	85, 511, 535
DdeI	CTNAG	2 cut(s)	332, 486
DpnI	GATC	3 cut(s)	473, 594, 756
DpnII	GATC	3 cut(s)	471, 592, 754
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	895
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	895
Eco130I	CCWWGG	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	64, 266
Eco57I	CTGAAG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	5 cut(s)	365, 478, 522, 694, 699
FatI	CATG	5 cut(s)	361, 474, 518, 690, 695
FbaI	TGATCA	2 cut(s)	471, 592
Fnu4HI	GCNGC	2 cut(s)	398, 494
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	2 cut(s)	398, 494
FspBI	CTAG	1 cut(s)	821
GluI	GCNGC	2 cut(s)	398, 494
HapII	CCGG	2 cut(s)	29, 551
HgaI	GACGC	1 cut(s)	499
Hin1II	CATG	5 cut(s)	365, 478, 522, 694, 699
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	7 cut(s)	11, 25, 326, 421, 433, 458, 911
HpaII	CCGG	2 cut(s)	29, 551
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	4 cut(s)	64, 513, 537, 928
Hpy188I	TCNGA	2 cut(s)	10, 895
Hpy188III	TCNNGA	4 cut(s)	107, 362, 437, 608
Hpy8I	GTNNAC	4 cut(s)	64, 513, 537, 928
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	5 cut(s)	94, 218, 287, 534, 890
HpyCH4III	ACNGT	2 cut(s)	248, 501
HpyCH4IV	ACGT	2 cut(s)	261, 740
HpyCH4V	TGCA	4 cut(s)	96, 375, 779, 922
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
HpyF3I	CTNAG	2 cut(s)	332, 486
HpySE526I	ACGT	2 cut(s)	261, 740
Hsp92II	CATG	5 cut(s)	365, 478, 522, 694, 699
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	471, 592
Kzo9I	GATC	3 cut(s)	471, 592, 754
LguI	GCTCTTC	1 cut(s)	895
LmnI	GCTCC	3 cut(s)	286, 699, 817
Lsp1109I	GCAGC	2 cut(s)	409, 480
LweI	GCATC	3 cut(s)	323, 736, 782
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	2 cut(s)	261, 740
MaeIII	GTNAC	4 cut(s)	248, 257, 274, 501
MalI	GATC	3 cut(s)	473, 594, 756
MboI	GATC	3 cut(s)	471, 592, 754
MboII	GAAGA	6 cut(s)	238, 359, 467, 641, 842, 912
MluCI	AATT	8 cut(s)	38, 49, 121, 138, 466, 843, 869, 942
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	2 cut(s)	244, 658
MnlI	CCTC	7 cut(s)	62, 103, 168, 191, 698, 784, 809
MseI	TTAA	3 cut(s)	237, 767, 849
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	29, 551
MspR9I	CCNGG	2 cut(s)	254, 551
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	406
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	471, 592, 754
NlaIII	CATG	5 cut(s)	365, 478, 522, 694, 699
NlaIV	GGNNCC	2 cut(s)	86, 796
NmeAIII	GCCGAG	1 cut(s)	164
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	522
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	895
PctI	GAATGC	1 cut(s)	717
PfeI	GAWTC	6 cut(s)	11, 25, 326, 421, 433, 458
PkrI	GCNGC	2 cut(s)	399, 495
PleI	GAGTC	1 cut(s)	905
PpsI	GAGTC	1 cut(s)	905
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	86, 796
PspPI	GGNCC	2 cut(s)	64, 266
PstNI	CAGNNNCTG	1 cut(s)	776
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	86, 512, 536
RsaNI	GTAC	3 cut(s)	85, 511, 535
SapI	GCTCTTC	1 cut(s)	895
SaqAI	TTAA	3 cut(s)	237, 767, 849
SatI	GCNGC	2 cut(s)	398, 494
Sau3AI	GATC	3 cut(s)	471, 592, 754
Sau96I	GGNCC	2 cut(s)	64, 266
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	2 cut(s)	254, 551
SfaNI	GCATC	3 cut(s)	323, 736, 782
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 266
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	8 cut(s)	38, 49, 121, 138, 466, 843, 869, 942
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	2 cut(s)	252, 549
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	2 cut(s)	248, 501
TaiI	ACGT	2 cut(s)	264, 743
TaqI	TCGA	6 cut(s)	106, 135, 588, 757, 858, 909
TaqII	GACCGA	2 cut(s)	81, 283
TasI	AATT	8 cut(s)	38, 49, 121, 138, 466, 843, 869, 942
TatI	WGTACW	2 cut(s)	510, 534
TfiI	GAWTC	6 cut(s)	11, 25, 326, 421, 433, 458
Tru1I	TTAA	3 cut(s)	237, 767, 849
Tru9I	TTAA	3 cut(s)	237, 767, 849
TscAI	CASTG	3 cut(s)	283, 565, 709
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	397, 493
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	9 cut(s)	62, 306, 339, 407, 642, 655, 843, 871, 879
TspRI	CASTG	3 cut(s)	283, 565, 709
VpaK11BI	GGWCC	2 cut(s)	64, 266
XapI	RAATTY	5 cut(s)	38, 49, 466, 843, 869
XceI	RCATGY	1 cut(s)	522
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.