Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

68132745 .. 68133399

Gene Structure 655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G045000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAATACCTGGCACCTCCTTCGAAGGACTACACCCTGGCGCTCCCGGCTCACATTGACAAGGGATTGGGCACAATTCTTTGTGATGATCATGTTTCAGGTCTTGAAGTCGAAACAAAGGATGGACAATGGGTCAAGTTGTCTCTATCTCCTTGTTCCTTCGTCTTTCTTGTTGCAGATTCCCTCATGGCATGGAGCAATGGAAGAATGCATTCTGTGAAGCATCTAGGAGTATTCGCAGTTCCATTGGAGGGTTCCATCATTAAGGCACAAAAGGAGCTAGTAGATGAAGAACATCCCCAAATTCTTAAAGATTTTGATTATACAGATTTTAGCAAGTTCTTCGCTTCGGAAAAAGGAAGGGTTATTGACCCAGAAAAGCAAGTTTTCGCATATGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

137

Amino Acids

15.2

Weight (kDa)

5.45

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	5 - 78	4e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	107
AhdI	GACNNNNNGTC	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	9, 36
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw26I	GTCTC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	43
AsuC2I	CCSGG	1 cut(s)	47
AsuII	TTCGAA	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	13
BccI	CCATC	2 cut(s)	116, 266
BcgI	CGANNNNNNTGC	3 cut(s)	37, 325, 359
BciT130I	CCWGG	2 cut(s)	11, 38
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	2 cut(s)	227, 281
BfoI	RGCGCY	1 cut(s)	44
Bme1390I	CCNGG	3 cut(s)	11, 38, 47
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	15, 256
BmrFI	CCNGG	3 cut(s)	11, 38, 47
BmsI	GCATC	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	11, 38
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	127, 295
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	2 cut(s)	211, 213
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	15, 256
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	11, 38
BstBI	TTCGAA	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	127, 295
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	11, 38
BstSCI	CCNGG	3 cut(s)	9, 36, 45
BstSLI	GKGCMC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	127, 295
CfoI	GCGC	1 cut(s)	43
CviAII	CATG	3 cut(s)	92, 187, 192
CviJI	RGCY	2 cut(s)	50, 280
CviKI_1	RGCY	2 cut(s)	50, 280
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DriI	GACNNNNNGTC	1 cut(s)	131
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	9, 36
EcoT22I	ATGCAT	1 cut(s)	213
FaeI	CATG	3 cut(s)	95, 190, 195
FaiI	YATR	6 cut(s)	93, 188, 193, 324, 394, 396
FatI	CATG	3 cut(s)	91, 186, 191
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	2 cut(s)	134, 282
FspBI	CTAG	2 cut(s)	227, 281
GlaI	GCGC	1 cut(s)	42
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	1 cut(s)	47
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	95, 190, 195
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	47
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	104
HpyAV	CCTTC	4 cut(s)	19, 30, 169, 354
HpyCH4V	TGCA	2 cut(s)	176, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	3 cut(s)	95, 190, 195
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	48, 195, 277
LpnPI	CCDG	7 cut(s)	23, 23, 50, 60, 84, 384, 387
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	227, 281
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	3 cut(s)	216, 302, 334
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	3 cut(s)	75, 303, 402
MnlI	CCTC	3 cut(s)	27, 194, 244
Mph1103I	ATGCAT	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	2 cut(s)	264, 309
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	3 cut(s)	11, 38, 47
Mva1269I	GAATGC	2 cut(s)	211, 213
MvaI	CCWGG	2 cut(s)	11, 38
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	47
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	3 cut(s)	95, 190, 195
NlaIV	GGNNCC	2 cut(s)	15, 256
NsiI	ATGCAT	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	23
PctI	GAATGC	2 cut(s)	211, 213
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	9, 36
PspGI	CCWGG	2 cut(s)	9, 36
PspN4I	GGNNCC	2 cut(s)	15, 256
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
SaqAI	TTAA	2 cut(s)	264, 309
Sau3AI	GATC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	11, 38, 47
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	4 cut(s)	12, 19, 103, 282
SfaNI	GCATC	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	23
Sse9I	AATT	3 cut(s)	75, 303, 402
SspMI	CTAG	2 cut(s)	227, 281
StyD4I	CCNGG	3 cut(s)	9, 36, 45
TaqI	TCGA	2 cut(s)	23, 111
TasI	AATT	3 cut(s)	75, 303, 402
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	264, 309
Tru9I	TTAA	2 cut(s)	264, 309
TspDTI	ATGAA	2 cut(s)	17, 303
XapI	RAATTY	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	2 cut(s)	227, 281
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.