Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

36270478 .. 36287322

Gene Structure 16845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG326800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTTACTTTGGGCAATATGCAAGTATTCCCTTGTTTGAGAGCTTTGGACTTGAAGATGCCTCCAACTATGACTCTGAGAAACTTCGCAGAACTAATGTGGCCAGATGGTCATGACCAGTTTTGTCAGACTGTAGTTCATATGATAAAGCAGCTGGATGAGCTTAAGGATATGATTGAACTGATGATTCTTGATAGTTATGGTTTAGGAGAGAAATTGAATTCAATCATGGTATGTAAAACACTGCCTCGAATAATGAAATACAGCTCACCTCCATCTGGGGAGTACATGCAGGGGCTCCATGCTCACACTGACAAAGTATTAAGCACAATCATTTGTGATGATCAAGTTTCAGGACTGGAGGATGGACAATGGATCAAGTTTTCTCTATCTCCTAACTCCTTTGTATTTATTGTTGGAGATCCTCTCATGGTAATTGCATATGCATCTCATACGTTTTGTGTCTTTATGCATACTGGGATTGATGCATGTGTTGCAATCCCGACACTGCTACGAGTACAGAAGTACGGTGCACCTCCATTAGGGGAGTGTGTGAATGGGCTCAATGCTCACACTGACAAAGCATTGACCGCAATCCTTTGCGATGATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACGGACAATGGATCAAGTTGTCTCTGCCTCCTAGTTCCTTTGTCTTTATTGTTGGAGATTCTCTTATGGCATGGAGTAATGGAAGAATGCATTCTGTAAAGCATCGAGTGATGATGTGTGGAGAAAAAGAACGGTATTCATTTGGAGCACTTGGAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTAGAAGATGAAGAACATCCACAACTCTTCAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

290

Amino Acids

32.35

Weight (kDa)

5.34

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	88 - 146	8.3e-07	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy	PF03171	171 - 261	2.5e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	809
AccB1I	GGYRCC	2 cut(s)	809, 823
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	3 cut(s)	383, 416, 659
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	220, 626
AfaI	GTAC	4 cut(s)	287, 519, 527, 811
AfiI	CCNNNNNNNGG	3 cut(s)	278, 542, 806
AflII	CTTAAG	1 cut(s)	164
AgsI	TTSAA	7 cut(s)	55, 179, 220, 225, 626, 632, 865
AluBI	AGCT	4 cut(s)	44, 154, 163, 267
AluI	AGCT	4 cut(s)	44, 154, 163, 267
Alw21I	GWGCWC	2 cut(s)	535, 790
Alw26I	GTCTC	1 cut(s)	666
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	3 cut(s)	383, 416, 659
AoxI	GGCC	1 cut(s)	101
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	2 cut(s)	220, 626
Asp700I	GAANNNNTTC	1 cut(s)	730
Asp718I	GGTACC	1 cut(s)	809
AsuHPI	GGTGA	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	103
BanI	GGYRCC	2 cut(s)	809, 823
BanII	GRGCYC	2 cut(s)	300, 564
Bbv12I	GWGCWC	2 cut(s)	535, 790
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	4 cut(s)	101, 283, 359, 821
BclI	TGATCA	2 cut(s)	343, 607
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmiI	GGNNCC	3 cut(s)	299, 811, 825
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	4 cut(s)	48, 455, 475, 751
BmuI	ACTGGG	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
BpmI	CTGGAG	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 542, 806
Bse1I	ACTGG	4 cut(s)	118, 363, 481, 800
BseGI	GGATG	3 cut(s)	163, 370, 850
BseLI	CCNNNNNNNGG	3 cut(s)	278, 542, 806
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	4 cut(s)	118, 363, 481, 800
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	1 cut(s)	163
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	2 cut(s)	809, 823
BsiHKAI	GWGCWC	2 cut(s)	535, 790
BslI	CCNNNNNNNGG	3 cut(s)	278, 542, 806
BsmAI	GTCTC	1 cut(s)	666
BsmI	GAATGC	2 cut(s)	730, 732
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	4 cut(s)	300, 535, 564, 790
Bsp143I	GATC	5 cut(s)	343, 375, 421, 607, 651
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	299, 811, 825
BspPI	GGATC	3 cut(s)	383, 416, 659
BspT107I	GGYRCC	2 cut(s)	809, 823
BspTI	CTTAAG	1 cut(s)	164
BsrI	ACTGG	4 cut(s)	118, 363, 481, 800
BssMI	GATC	5 cut(s)	343, 375, 421, 607, 651
Bst4CI	ACNGT	3 cut(s)	133, 530, 774
Bst6I	CTCTTC	1 cut(s)	866
BstAFI	CTTAAG	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	163, 370, 850
BstKTI	GATC	5 cut(s)	346, 378, 424, 610, 654
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	5 cut(s)	343, 375, 421, 607, 651
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 494, 590
BstNSI	RCATGY	2 cut(s)	292, 492
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	3 cut(s)	163, 370, 850
BtsI	GCAGTG	2 cut(s)	242, 506
BtsIMutI	CAGTG	4 cut(s)	242, 309, 506, 573
CciI	TCATGA	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	286, 518, 526, 810
CviAII	CATG	7 cut(s)	113, 229, 289, 302, 430, 489, 711
CviJI	RGCY	8 cut(s)	44, 103, 154, 163, 267, 298, 562, 622
CviKI_1	RGCY	8 cut(s)	44, 103, 154, 163, 267, 298, 562, 622
CviQI	GTAC	4 cut(s)	286, 518, 526, 810
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	5 cut(s)	345, 377, 423, 609, 653
DpnII	GATC	5 cut(s)	343, 375, 421, 607, 651
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	866
EarI	CTCTTC	1 cut(s)	866
Eco24I	GRGCYC	2 cut(s)	300, 564
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoRI	GAATTC	1 cut(s)	220
EcoT22I	ATGCAT	4 cut(s)	448, 474, 490, 732
EcoT38I	GRGCYC	2 cut(s)	300, 564
FaeI	CATG	7 cut(s)	116, 232, 292, 305, 433, 492, 714
FatI	CATG	7 cut(s)	112, 228, 288, 301, 429, 488, 710
FauNDI	CATATG	2 cut(s)	141, 442
FbaI	TGATCA	2 cut(s)	343, 607
Fnu4HI	GCNGC	1 cut(s)	152
FokI	GGATG	3 cut(s)	170, 377, 837
FriOI	GRGCYC	2 cut(s)	300, 564
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	103
Hin1II	CATG	7 cut(s)	116, 232, 292, 305, 433, 492, 714
HinfI	GANTC	3 cut(s)	73, 187, 698
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	2 cut(s)	78, 129
Hpy188III	TCNNGA	4 cut(s)	113, 191, 354, 502
Hpy8I	GTNNAC	1 cut(s)	533
HpyCH4III	ACNGT	3 cut(s)	133, 530, 774
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	9 cut(s)	22, 292, 440, 446, 472, 488, 497, 533, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 494, 590
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	7 cut(s)	116, 232, 292, 305, 433, 492, 714
KpnI	GGTACC	1 cut(s)	813
Ksp22I	TGATCA	2 cut(s)	343, 607
Kzo9I	GATC	5 cut(s)	343, 375, 421, 607, 651
LmnI	GCTCC	2 cut(s)	303, 785
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	4 cut(s)	48, 455, 475, 751
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	5 cut(s)	345, 377, 423, 609, 653
MboI	GATC	5 cut(s)	343, 375, 421, 607, 651
MboII	GAAGA	5 cut(s)	67, 735, 851, 853, 857
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	4 cut(s)	300, 535, 564, 790
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	4 cut(s)	215, 220, 435, 626
MluNI	TGGCCA	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	3 cut(s)	89, 397, 673
MnlI	CCTC	8 cut(s)	72, 258, 282, 355, 435, 546, 678, 799
Mox20I	TGGCCA	1 cut(s)	103
Mph1103I	ATGCAT	4 cut(s)	448, 474, 490, 732
MroXI	GAANNNNTTC	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	103
MseI	TTAA	2 cut(s)	165, 323
Msp20I	TGGCCA	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	154
MspCI	CTTAAG	1 cut(s)	164
Mva1269I	GAATGC	2 cut(s)	730, 732
MwoI	GCNNNNNNNGC	3 cut(s)	160, 494, 590
NdeI	CATATG	2 cut(s)	141, 442
NdeII	GATC	5 cut(s)	343, 375, 421, 607, 651
NlaIII	CATG	7 cut(s)	116, 232, 292, 305, 433, 492, 714
NlaIV	GGNNCC	3 cut(s)	299, 811, 825
NsiI	ATGCAT	4 cut(s)	448, 474, 490, 732
NspI	RCATGY	2 cut(s)	292, 492
PagI	TCATGA	1 cut(s)	112
PctI	GAATGC	2 cut(s)	730, 732
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	187, 698
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PspN4I	GGNNCC	3 cut(s)	299, 811, 825
PsuI	RGATCY	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	4 cut(s)	287, 519, 527, 811
RsaNI	GTAC	4 cut(s)	286, 518, 526, 810
SaqAI	TTAA	2 cut(s)	165, 323
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	5 cut(s)	343, 375, 421, 607, 651
SchI	GAGTC	1 cut(s)	67
SduI	GDGCHC	4 cut(s)	300, 535, 564, 790
SetI	ASST	7 cut(s)	46, 156, 165, 269, 274, 458, 538
SfaNI	GCATC	4 cut(s)	48, 455, 475, 751
SfcI	CTRYAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	4 cut(s)	215, 220, 435, 626
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	1 cut(s)	672
TaaI	ACNGT	3 cut(s)	133, 530, 774
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	250, 745
TasI	AATT	4 cut(s)	215, 220, 435, 626
TatI	WGTACW	2 cut(s)	285, 517
TfiI	GAWTC	2 cut(s)	187, 698
Tru1I	TTAA	2 cut(s)	165, 323
Tru9I	TTAA	2 cut(s)	165, 323
TscAI	CASTG	4 cut(s)	249, 316, 513, 580
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	128, 272, 768, 858
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	4 cut(s)	249, 316, 513, 580
Vha464I	CTTAAG	1 cut(s)	164
VneI	GTGCAC	1 cut(s)	531
XagI	CCTNNNNNAGG	1 cut(s)	540
XapI	RAATTY	2 cut(s)	220, 626
XceI	RCATGY	2 cut(s)	292, 492
XmnI	GAANNNNTTC	1 cut(s)	730
XspI	CTAG	1 cut(s)	672
Zsp2I	ATGCAT	4 cut(s)	448, 474, 490, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.