Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001266.1

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

57855 .. 59337

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001266.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgggttcagattctcatgaccagattccggccatagcattcacaatcaactcgcgggaggtggaccgaggaactgatgagtggtaccatctgtgcaagatggttcgagaggcttgtgaaaattatggttgctttgaaatagtgtatgataagatacctccgcagttgagagctgaaaccttctctgtgtcaaggcaacttttcagccttccactggagaaaaagaaaaagaaccttaatccaaagccttaccagggttaccttgcaccaactgtccaggctcccttgtatgagagctttggcctagaggaagcctccaactatgaatcccttagatgcttgacagaagaaatatcgcccaatggtcatgaccagttttgcactgtcatttctatgacgaagcagctggatgagctaaaagatatgattaacttgatgattcttgatagttatgggttgggagagaaatcaaattcgactttgcagtctaagacactgctacggataatgaaatacctggcacctccttcaaaggactacactcaggctctcccggctcacactgacaagggattgggcacaattctttgtgatgatcaagtttcaggtcttgaagttgaaaccaaggatggacaatgggtcaaattgtcactttctcctcgttccttcgtctttcttgttgcagattccctcatggcatggagcaatggaagaatgcattcggtgaagcatcgagtgatgatgcgtggagaaaaagaacgatattctttaggagcatttgcagttccattggagggttccatcattaaggcacaaaaggagctagtagatgaagaacatccccaaattcttaaagattttgattatacagattttatcaagttcttcgcttcagacaaaggaagggccattgacccagaaaagcaagttttcgcatatgctggaattagcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

318

Amino Acids

36.02

Weight (kDa)

5.49

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 520
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	55, 161
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	472, 846
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	4 cut(s)	28, 214, 254, 794
AgsI	TTSAA	4 cut(s)	137, 531, 614, 620
AhdI	GACNNNNNGTC	1 cut(s)	638
AjnI	CCWGG	3 cut(s)	252, 276, 516
AluBI	AGCT	5 cut(s)	173, 297, 406, 415, 823
AluI	AGCT	5 cut(s)	173, 297, 406, 415, 823
AoxI	GGCC	3 cut(s)	30, 301, 906
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	472, 846
Asp700I	GAANNNNTTC	1 cut(s)	718
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 906
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	736
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	581
BanI	GGYRCC	2 cut(s)	84, 520
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	4 cut(s)	94, 96, 623, 809
BciT130I	CCWGG	3 cut(s)	254, 278, 518
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	554
BfaI	CTAG	2 cut(s)	305, 824
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	4 cut(s)	254, 278, 518, 554
Bme18I	GGWCC	1 cut(s)	64
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmgT120I	GGNCC	2 cut(s)	64, 906
BmiI	GGNNCC	4 cut(s)	86, 282, 522, 799
BmrFI	CCNGG	4 cut(s)	254, 278, 518, 554
BmsI	GCATC	3 cut(s)	326, 732, 739
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpmI	CTGGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	67, 253, 624
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 214, 254, 794
Bse1I	ACTGG	2 cut(s)	219, 373
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	3 cut(s)	254, 278, 518
BseDI	CCNNGG	3 cut(s)	67, 253, 624
BseGI	GGATG	3 cut(s)	415, 634, 838
BseLI	CCNNNNNNNGG	4 cut(s)	28, 214, 254, 794
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	219, 373
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	32, 303, 908
BshNI	GGYRCC	2 cut(s)	84, 520
BsiSI	CCGG	2 cut(s)	29, 554
BslI	CCNNNNNNNGG	4 cut(s)	28, 214, 254, 794
BsmI	GAATGC	3 cut(s)	38, 718, 720
BsnI	GGCC	3 cut(s)	32, 303, 908
Bsp1286I	GDGCHC	1 cut(s)	581
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	2 cut(s)	55, 161
BspANI	GGCC	3 cut(s)	32, 303, 908
BspCNI	CTCAG	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	2 cut(s)	16, 367
BspLI	GGNNCC	4 cut(s)	86, 282, 522, 799
BspT107I	GGYRCC	2 cut(s)	84, 520
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	2 cut(s)	219, 373
BssECI	CCNNGG	3 cut(s)	67, 253, 624
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	3 cut(s)	254, 278, 518
Bst4CI	ACNGT	2 cut(s)	274, 385
BstDEI	CTNAG	3 cut(s)	332, 489, 543
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	415, 634, 838
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	598
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 554
BstNI	CCWGG	3 cut(s)	254, 278, 518
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	252, 276, 516, 552
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	32, 303, 908
BtsCI	GGATG	3 cut(s)	415, 634, 838
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	4 cut(s)	212, 381, 494, 561
CciI	TCATGA	2 cut(s)	16, 367
Cfr13I	GGNCC	2 cut(s)	64, 906
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	17, 368, 694, 699
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	332, 489, 543
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DrdI	GACNNNNNNGTC	1 cut(s)	484
DriI	GACNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	30
Eam1105I	GACNNNNNGTC	1 cut(s)	638
Eco130I	CCWWGG	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	876
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	252, 276, 516
EcoT14I	CCWWGG	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	4 cut(s)	20, 371, 697, 702
FatI	CATG	4 cut(s)	16, 367, 693, 698
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	3 cut(s)	422, 641, 825
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	305, 824
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	3 cut(s)	32, 303, 908
HapII	CCGG	2 cut(s)	29, 554
Hin1II	CATG	4 cut(s)	20, 371, 697, 702
HinfI	GANTC	5 cut(s)	11, 25, 326, 439, 686
HpaII	CCGG	2 cut(s)	29, 554
HphI	GGTGA	1 cut(s)	736
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	10, 895
Hpy188III	TCNNGA	5 cut(s)	17, 107, 368, 443, 611
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	5 cut(s)	190, 218, 537, 676, 897
HpyCH4III	ACNGT	2 cut(s)	274, 385
HpyCH4V	TGCA	7 cut(s)	96, 266, 381, 484, 683, 718, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 554
HpyF3I	CTNAG	3 cut(s)	332, 489, 543
Hsp92II	CATG	4 cut(s)	20, 371, 697, 702
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	4 cut(s)	286, 702, 773, 820
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	3 cut(s)	326, 732, 739
MaeI	CTAG	2 cut(s)	305, 824
MaeIII	GTNAC	2 cut(s)	257, 648
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	4 cut(s)	359, 723, 845, 877
MhlI	GDGCHC	1 cut(s)	581
MluCI	AATT	6 cut(s)	121, 472, 582, 644, 846, 945
MmeI	TCCRAC	1 cut(s)	342
Mph1103I	ATGCAT	1 cut(s)	720
MroXI	GAANNNNTTC	1 cut(s)	718
MseI	TTAA	4 cut(s)	237, 429, 807, 852
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	2 cut(s)	29, 554
MspR9I	CCNGG	4 cut(s)	254, 278, 518, 554
Mva1269I	GAATGC	3 cut(s)	38, 718, 720
MvaI	CCWGG	3 cut(s)	254, 278, 518
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	412, 554
NciI	CCSGG	1 cut(s)	554
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	20, 371, 697, 702
NlaIV	GGNNCC	4 cut(s)	86, 282, 522, 799
NmuCI	GTSAC	1 cut(s)	648
NsiI	ATGCAT	1 cut(s)	720
PagI	TCATGA	2 cut(s)	16, 367
PctI	GAATGC	3 cut(s)	38, 718, 720
PdmI	GAANNNNTTC	1 cut(s)	718
PfeI	GAWTC	5 cut(s)	11, 25, 326, 439, 686
PkrI	GCNGC	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	252, 276, 516
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	3 cut(s)	252, 276, 516
PspN4I	GGNNCC	4 cut(s)	86, 282, 522, 799
PspPI	GGNCC	2 cut(s)	64, 906
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	4 cut(s)	237, 429, 807, 852
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	2 cut(s)	64, 906
ScrFI	CCNGG	4 cut(s)	254, 278, 518, 554
SduI	GDGCHC	1 cut(s)	581
SfaNI	GCATC	3 cut(s)	326, 732, 739
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	6 cut(s)	121, 472, 582, 644, 846, 945
SsiI	CCGC	2 cut(s)	55, 161
SspMI	CTAG	2 cut(s)	305, 824
StyD4I	CCNGG	4 cut(s)	252, 276, 516, 552
StyI	CCWWGG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	274, 385
TaqI	TCGA	3 cut(s)	106, 476, 733
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	6 cut(s)	121, 472, 582, 644, 846, 945
TfiI	GAWTC	5 cut(s)	11, 25, 326, 439, 686
Tru1I	TTAA	4 cut(s)	237, 429, 807, 852
Tru9I	TTAA	4 cut(s)	237, 429, 807, 852
TscAI	CASTG	4 cut(s)	219, 388, 501, 568
TseFI	GTSAC	1 cut(s)	648
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	648
TspDTI	ATGAA	3 cut(s)	339, 524, 846
TspGWI	ACGGA	1 cut(s)	517
TspRI	CASTG	4 cut(s)	219, 388, 501, 568
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	472, 846
XmnI	GAANNNNTTC	1 cut(s)	718
XspI	CTAG	2 cut(s)	305, 824
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.