Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003514.1

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

54792 .. 56212

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003514.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgaattcgcttgaagtggaccgaggaagtgttgagtggtaccatctgtgcaagaaggttcgagaggcttgtgaaaattatggttgcttcgagattgtgtatgataagatacctccgcagacaaaagccgaaatcctttcagcttcaaggaaactttacagccttccacttgagacaaagaagaacaaccttaccccaaaccgttaccagggttaccttggaccgagtgtcactgctcccttgtatgaaggctttggctttcaggaagcatccaactatgaatcccttagaagcttcacagaagaaatatggtctcatgaccagttttgcactttcgtttctacgatgaagcagctggatgagctgagagatatgattcacttgatgattcttgatagctatggtttggaaaaatcatcaaatttgatcatggtgtctaagacgctgctacggttacagaagtacacggcacctccttcaggggagtacgcgatggctgccccggctcacactgacaagaattttagcacaatccttttcgatgatcaagtttcaggtcttgaagttcaaaccaaggacgaacaatgggtcaagttgcctatatctccttgctctttcatctttgctgtcggagacttcctcatggcatggagtagtggcagaatgcattctgtgaagcatcgggtgatgatatgtggggaaaaagatcgacattccttgatagcatctgcacttccaatagagggttccgtcatcaaagcacaaaaggagctagtagatgaagactacccacaaattcttaaagatttcgaccatacagaatttttaaacttcatctgttcatcagaaggaaaagccattgactcacaaatgcaagtttacgcatttgctggaattggaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

301

Amino Acids

34.15

Weight (kDa)

5.34

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	39, 469
AccII	CGCG	1 cut(s)	491
AciI	CCGC	1 cut(s)	116
AcsI	RAATTY	5 cut(s)	4, 421, 520, 795, 821
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	3 cut(s)	41, 464, 488
AfiI	CCNNNNNNNGG	3 cut(s)	208, 479, 743
AgsI	TTSAA	4 cut(s)	14, 147, 563, 569
AhdI	GACNNNNNGTC	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	207
AjuI	GAANNNNNNNTTGG	2 cut(s)	730, 762
AluBI	AGCT	6 cut(s)	143, 294, 355, 364, 399, 772
AluI	AGCT	6 cut(s)	143, 294, 355, 364, 399, 772
Alw26I	GTCTC	3 cut(s)	167, 318, 627
ApeKI	GCWGC	3 cut(s)	352, 445, 497
ApoI	RAATTY	5 cut(s)	4, 421, 520, 795, 821
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
Asp700I	GAANNNNTTC	1 cut(s)	667
Asp718I	GGTACC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	19, 221
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	697
AvaII	GGWCC	2 cut(s)	19, 221
BanI	GGYRCC	2 cut(s)	39, 469
BbsI	GAAGAC	1 cut(s)	789
BbvI	GCAGC	3 cut(s)	364, 432, 484
BccI	CCATC	2 cut(s)	51, 487
BceAI	ACGGC	1 cut(s)	483
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	2 cut(s)	426, 544
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	167, 318, 627
BfaI	CTAG	1 cut(s)	773
BisI	GCNGC	3 cut(s)	353, 446, 498
BlsI	GCNGC	3 cut(s)	354, 447, 499
Bme1390I	CCNGG	2 cut(s)	209, 503
Bme18I	GGWCC	2 cut(s)	19, 221
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	19, 221
BmiI	GGNNCC	3 cut(s)	41, 471, 748
BmrFI	CCNGG	2 cut(s)	209, 503
BmsI	GCATC	3 cut(s)	278, 688, 734
BpiI	GAAGAC	1 cut(s)	789
BplI	GAGNNNNNCTC	2 cut(s)	624, 656
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	5 cut(s)	22, 208, 217, 501, 573
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 479, 743
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	5 cut(s)	22, 208, 217, 501, 573
BseGI	GGATG	2 cut(s)	269, 364
BseLI	CCNNNNNNNGG	3 cut(s)	208, 479, 743
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	322
BseXI	GCAGC	3 cut(s)	364, 432, 484
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	491
BshNI	GGYRCC	2 cut(s)	39, 469
BsiSI	CCGG	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	208, 479, 743
BsmAI	GTCTC	3 cut(s)	167, 318, 627
BsmI	GAATGC	2 cut(s)	667, 669
Bso31I	GGTCTC	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	426, 544, 706
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	491
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	3 cut(s)	41, 471, 748
BspT107I	GGYRCC	2 cut(s)	39, 469
BspTNI	GGTCTC	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	5 cut(s)	22, 208, 217, 501, 573
BssMI	GATC	3 cut(s)	426, 544, 706
BssT1I	CCWWGG	2 cut(s)	217, 573
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	203, 453
BstDEI	CTNAG	3 cut(s)	287, 365, 438
BstEII	GGTNACC	1 cut(s)	212
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	269, 364
BstFNI	CGCG	1 cut(s)	491
BstKTI	GATC	3 cut(s)	429, 547, 709
BstMAI	GTCTC	3 cut(s)	167, 318, 627
BstMBI	GATC	3 cut(s)	426, 544, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 497, 503
BstNI	CCWGG	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	207, 501
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	364, 432, 484
BstV2I	GAAGAC	1 cut(s)	789
BtgZI	GCGATG	1 cut(s)	506
BtsCI	GGATG	2 cut(s)	269, 364
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 510
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	19, 221
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	40, 463, 487
CviAII	CATG	4 cut(s)	317, 430, 643, 648
CviQI	GTAC	3 cut(s)	40, 463, 487
DdeI	CTNAG	3 cut(s)	287, 365, 438
DpnI	GATC	3 cut(s)	428, 546, 708
DpnII	GATC	3 cut(s)	426, 544, 706
DraI	TTTAAA	1 cut(s)	828
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	217, 573
Eco31I	GGTCTC	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	19, 221
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO65I	GGTNACC	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	217, 573
EcoT22I	ATGCAT	1 cut(s)	669
ErhI	CCWWGG	2 cut(s)	217, 573
FaeI	CATG	4 cut(s)	320, 433, 646, 651
FatI	CATG	4 cut(s)	316, 429, 642, 647
FbaI	TGATCA	2 cut(s)	426, 544
Fnu4HI	GCNGC	3 cut(s)	353, 446, 498
FokI	GGATG	2 cut(s)	256, 371
Fsp4HI	GCNGC	3 cut(s)	353, 446, 498
FspBI	CTAG	1 cut(s)	773
GluI	GCNGC	3 cut(s)	353, 446, 498
HapII	CCGG	1 cut(s)	503
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	320, 433, 646, 651
HindIII	AAGCTT	1 cut(s)	292
HinfI	GANTC	4 cut(s)	281, 376, 388, 863
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	3 cut(s)	19, 465, 880
Hpy188I	TCNGA	2 cut(s)	632, 847
Hpy188III	TCNNGA	6 cut(s)	62, 91, 263, 317, 392, 560
Hpy8I	GTNNAC	3 cut(s)	19, 465, 880
HpyAV	CCTTC	5 cut(s)	49, 173, 242, 486, 842
HpyCH4III	ACNGT	2 cut(s)	203, 453
HpyCH4V	TGCA	5 cut(s)	51, 330, 667, 731, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 497, 503
HpyF3I	CTNAG	3 cut(s)	287, 365, 438
Hsp92II	CATG	4 cut(s)	320, 433, 646, 651
KpnI	GGTACC	1 cut(s)	43
Ksp22I	TGATCA	2 cut(s)	426, 544
Kzo9I	GATC	3 cut(s)	426, 544, 706
LmnI	GCTCC	2 cut(s)	241, 769
LpnPI	CCDG	9 cut(s)	194, 221, 248, 335, 341, 465, 516, 540, 876
Lsp1109I	GCAGC	3 cut(s)	364, 432, 484
LweI	GCATC	3 cut(s)	278, 688, 734
MaeI	CTAG	1 cut(s)	773
MaeIII	GTNAC	4 cut(s)	203, 212, 229, 453
MalI	GATC	3 cut(s)	428, 546, 708
MboI	GATC	3 cut(s)	426, 544, 706
MboII	GAAGA	3 cut(s)	193, 314, 794
MluCI	AATT	7 cut(s)	4, 76, 421, 520, 795, 821, 894
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	2 cut(s)	297, 610
MnlI	CCTC	6 cut(s)	17, 58, 123, 483, 650, 736
Mph1103I	ATGCAT	1 cut(s)	669
MroXI	GAANNNNTTC	1 cut(s)	667
MseI	TTAA	2 cut(s)	801, 827
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	209, 503
Mva1269I	GAATGC	2 cut(s)	667, 669
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	3 cut(s)	361, 497, 503
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	3 cut(s)	426, 544, 706
NlaIII	CATG	4 cut(s)	320, 433, 646, 651
NlaIV	GGNNCC	3 cut(s)	41, 471, 748
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	669
PagI	TCATGA	1 cut(s)	316
PctI	GAATGC	2 cut(s)	667, 669
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	3 cut(s)	281, 376, 388
PkrI	GCNGC	3 cut(s)	354, 447, 499
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	207
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	41, 471, 748
PspPI	GGNCC	2 cut(s)	19, 221
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	3 cut(s)	41, 464, 488
RsaNI	GTAC	3 cut(s)	40, 463, 487
SaqAI	TTAA	2 cut(s)	801, 827
SatI	GCNGC	3 cut(s)	353, 446, 498
Sau3AI	GATC	3 cut(s)	426, 544, 706
Sau96I	GGNCC	2 cut(s)	19, 221
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	2 cut(s)	209, 503
SfaNI	GCATC	3 cut(s)	278, 688, 734
SinI	GGWCC	2 cut(s)	19, 221
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	7 cut(s)	4, 76, 421, 520, 795, 821, 894
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	1 cut(s)	773
StyD4I	CCNGG	2 cut(s)	207, 501
StyI	CCWWGG	2 cut(s)	217, 573
TaaI	ACNGT	2 cut(s)	203, 453
TaqI	TCGA	5 cut(s)	61, 90, 540, 709, 810
TaqII	GACCGA	2 cut(s)	36, 238
TasI	AATT	7 cut(s)	4, 76, 421, 520, 795, 821, 894
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	3 cut(s)	281, 376, 388
Tru1I	TTAA	2 cut(s)	801, 827
Tru9I	TTAA	2 cut(s)	801, 827
TscAI	CASTG	2 cut(s)	238, 517
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	3 cut(s)	352, 445, 497
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	8 cut(s)	17, 261, 294, 362, 607, 795, 823, 831
TspGWI	ACGGA	1 cut(s)	739
TspRI	CASTG	2 cut(s)	238, 517
VpaK11BI	GGWCC	2 cut(s)	19, 221
XagI	CCTNNNNNAGG	1 cut(s)	477
XapI	RAATTY	5 cut(s)	4, 421, 520, 795, 821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	1 cut(s)	773
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.