Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

22550261 .. 22551023

Gene Structure 763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG134500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCATGTAAGACGCTGCTACGAGTACAGAAGTACAGTGCACCTCCATTAGGGGAGTATGTGACTGGGCTCAATGCTCACACTGACAAAGCATTGACCGCAATACTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACGGACAATGGATCAAGTTGTCTCTGCCTCCTAGTTCCTTTGTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATTCTGTAAAGCATCGAGTGATGATGTGTGGAGAAAAAGAACGATATTCGTTAGGAGCATTTGGAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTAGTAGAAGAAGAACATCCACAAATCTTTAAAGACTTTGACTATATGGATTTTAGTATGTTTGGCCTTTCAGCGGAAGCAATGGCCATCGACTCAGCAATGCAAATTTCAGCTTTTGCAGGAATCAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

158

Amino Acids

17.4

Weight (kDa)

5.15

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	7 - 100	9.2e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	2 cut(s)	317, 331
AciI	CCGC	2 cut(s)	99, 416
AclWI	GGATC	2 cut(s)	167, 200
AcoI	YGGCCR	1 cut(s)	426
AcsI	RAATTY	2 cut(s)	134, 447
AfaI	GTAC	3 cut(s)	27, 35, 319
AfiI	CCNNNNNNNGG	3 cut(s)	50, 314, 415
AgsI	TTSAA	2 cut(s)	134, 140
AluBI	AGCT	2 cut(s)	455, 474
AluI	AGCT	2 cut(s)	455, 474
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	167, 200
AlwNI	CAGNNNCTG	1 cut(s)	474
AoxI	GGCC	2 cut(s)	406, 426
ApaLI	GTGCAC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	2 cut(s)	134, 447
Asp700I	GAANNNNTTC	1 cut(s)	238
Asp718I	GGTACC	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	428
BanI	GGYRCC	2 cut(s)	317, 331
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	2 cut(s)	329, 437
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	319, 333
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 314, 415
Bse1I	ACTGG	2 cut(s)	70, 308
Bse3DI	GCAATG	2 cut(s)	429, 447
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	3 cut(s)	50, 314, 415
BseMI	GCAATG	2 cut(s)	429, 447
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	2 cut(s)	70, 308
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	3
BshFI	GGCC	2 cut(s)	408, 428
BshNI	GGYRCC	2 cut(s)	317, 331
BsiHKAI	GWGCWC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	50, 314, 415
BsmAI	GTCTC	1 cut(s)	174
BsmI	GAATGC	2 cut(s)	238, 240
BsnI	GGCC	2 cut(s)	408, 428
Bsp1286I	GDGCHC	2 cut(s)	43, 72
Bsp143I	GATC	3 cut(s)	115, 159, 205
BspACI	CCGC	2 cut(s)	99, 416
BspANI	GGCC	2 cut(s)	408, 428
BspCNI	CTCAG	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	319, 333
BspPI	GGATC	2 cut(s)	167, 200
BspT107I	GGYRCC	2 cut(s)	317, 331
BsrDI	GCAATG	2 cut(s)	429, 447
BsrI	ACTGG	2 cut(s)	70, 308
BssMI	GATC	3 cut(s)	115, 159, 205
Bst4CI	ACNGT	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	436
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	3 cut(s)	118, 162, 208
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	115, 159, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	3
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	408, 428
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	2 cut(s)	43, 81
CaiI	CAGNNNCTG	1 cut(s)	474
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	26, 34, 318
CviAII	CATG	2 cut(s)	6, 219
CviJI	RGCY	6 cut(s)	70, 130, 408, 428, 455, 474
CviKI_1	RGCY	6 cut(s)	70, 130, 408, 428, 455, 474
CviQI	GTAC	3 cut(s)	26, 34, 318
DdeI	CTNAG	1 cut(s)	436
DpnI	GATC	3 cut(s)	117, 161, 207
DpnII	GATC	3 cut(s)	115, 159, 205
DraI	TTTAAA	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	72
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	72
FaeI	CATG	2 cut(s)	9, 222
FaiI	YATR	7 cut(s)	7, 60, 215, 220, 387, 389, 401
FatI	CATG	2 cut(s)	5, 218
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	408, 428
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	9, 222
HinfI	GANTC	2 cut(s)	434, 465
Hpy166II	GTNNAC	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	4 cut(s)	41, 238, 445, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	9, 222
KpnI	GGTACC	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	115, 159, 205
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	4 cut(s)	51, 111, 321, 447
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	3 cut(s)	117, 161, 207
MboI	GATC	3 cut(s)	115, 159, 205
MboII	GAAGA	3 cut(s)	243, 362, 365
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	43, 72
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	2 cut(s)	134, 447
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	54, 186, 219, 307
Mox20I	TGGCCA	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	416
Mva1269I	GAATGC	2 cut(s)	238, 240
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	3 cut(s)	115, 159, 205
NlaIII	CATG	2 cut(s)	9, 222
NlaIV	GGNNCC	2 cut(s)	319, 333
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	9
PctI	GAATGC	2 cut(s)	238, 240
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	319, 333
PstNI	CAGNNNCTG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	3 cut(s)	27, 35, 319
RsaNI	GTAC	3 cut(s)	26, 34, 318
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	3 cut(s)	115, 159, 205
SchI	GAGTC	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	43, 72
SetI	ASST	3 cut(s)	46, 457, 476
SfaNI	GCATC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	134, 447
SsiI	CCGC	2 cut(s)	99, 416
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	253, 432
TasI	AATT	2 cut(s)	134, 447
TatI	WGTACW	2 cut(s)	25, 33
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	43, 88
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	2 cut(s)	43, 88
VneI	GTGCAC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	2 cut(s)	134, 447
XceI	RCATGY	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.