Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00043

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

75656 .. 77406

Gene Structure 1751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCCAGAAATGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGTTAAAAGCCGAAACCTTCTCTGCGTCAAGGAAACTTTTCATCCTTCCACTTGAGACAAAGAAGCAGAACCTTAATCCAAAACCTTACCAGGGTTACCTTGGACCAAGTGTCCGTGCTCCCTTGTATGAAGGCTTTGGCTTTGAGGAAGCATCCAACTATGAATCCCTTGGTAGCTTGACAGAAGATATATGGAGTCTGACCAGTTTTGGTAATACTGTCATTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTAACTTGATGATTCTTGATAGCTATGGTTTGGAAGAGACCTCAAATTTGATCATGGTGTCCAAGACACTGCTACGGTTACAGAAGTACACGGCACCTCCTTCAAGGGAGTACACCATGGGATCCCCGGCTCACACTGACAAGAATTTTGGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGATGAACAATGGGTCAAGTTGTCTATATCTCCTCGCTCTTTCGTCTTTGTTGTTGGAGACTCCCTCATGGCATGGAGCAATGGCAGAATGCATTCTGTGAATCATCGGGTGATGATGTGTGGGGAAAAAGAACGACATTCTTTAGCAGCATTTGCACTTCCAATAGAGGGTTCCATCATCAAGGCACAAAAGGAGCTAGTAGATGAAGACTACCCCCGTATTCTTAAAGATTTCGACTATACAGACTTTAGCAAGTTCATCTTTTCAGAAGGAAGAGCCATCGAATCACAAATGCAAGTTTTCGCATATGCTGGAATTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

36.05

Weight (kDa)

5.07

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 89	6.4e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	166 - 260	7.4e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 517
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	540, 553
AcsI	RAATTY	4 cut(s)	38, 49, 469, 568
AfaI	GTAC	3 cut(s)	86, 512, 536
AfiI	CCNNNNNNNGG	3 cut(s)	28, 254, 791
AgsI	TTSAA	3 cut(s)	528, 611, 617
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AluBI	AGCT	5 cut(s)	339, 403, 412, 447, 820
AluI	AGCT	5 cut(s)	339, 403, 412, 447, 820
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	3 cut(s)	212, 455, 675
AlwI	GGATC	2 cut(s)	540, 553
ApeKI	GCWGC	2 cut(s)	400, 770
ApoI	RAATTY	4 cut(s)	38, 49, 469, 568
ArsI	GACNNNNNNTTYG	4 cut(s)	454, 486, 554, 586
Asp700I	GAANNNNTTC	2 cut(s)	200, 715
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 266
BamHI	GGATCC	1 cut(s)	545
BanI	GGYRCC	2 cut(s)	84, 517
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	412, 782
BccI	CCATC	3 cut(s)	96, 806, 911
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	2 cut(s)	474, 592
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	3 cut(s)	212, 455, 675
BfaI	CTAG	1 cut(s)	821
BisI	GCNGC	2 cut(s)	401, 771
BlsI	GCNGC	2 cut(s)	402, 772
Bme1390I	CCNGG	2 cut(s)	254, 551
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	4 cut(s)	86, 519, 547, 796
BmrFI	CCNGG	2 cut(s)	254, 551
BmsI	GCATC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	837
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	7 cut(s)	67, 253, 262, 331, 540, 549, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 254, 791
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	7 cut(s)	67, 253, 262, 331, 540, 549, 621
BseGI	GGATG	4 cut(s)	204, 314, 412, 631
BseLI	CCNNNNNNNGG	3 cut(s)	28, 254, 791
BseMI	GCAATG	1 cut(s)	709
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	2 cut(s)	412, 782
BshNI	GGYRCC	2 cut(s)	84, 517
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	29, 551
BslI	CCNNNNNNNGG	3 cut(s)	28, 254, 791
BsmAI	GTCTC	3 cut(s)	212, 455, 675
BsmI	GAATGC	2 cut(s)	715, 717
Bso31I	GGTCTC	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	474, 545, 592
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	1 cut(s)	161
BspLI	GGNNCC	4 cut(s)	86, 519, 547, 796
BspPI	GGATC	2 cut(s)	540, 553
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	84, 517
BspTNI	GGTCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	7 cut(s)	67, 253, 262, 331, 540, 549, 621
BssMI	GATC	3 cut(s)	474, 545, 592
BssT1I	CCWWGG	4 cut(s)	262, 331, 540, 621
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	382, 501
Bst6I	CTCTTC	2 cut(s)	453, 892
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	4 cut(s)	204, 314, 412, 631
BstKTI	GATC	3 cut(s)	477, 548, 595
BstMAI	GTCTC	3 cut(s)	212, 455, 675
BstMBI	GATC	3 cut(s)	474, 545, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 776
BstNI	CCWGG	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	252, 549
BstV1I	GCAGC	2 cut(s)	412, 782
BstV2I	GAAGAC	1 cut(s)	837
BstX2I	RGATCY	1 cut(s)	545
BstYI	RGATCY	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	4 cut(s)	204, 314, 412, 631
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	491, 558
Cfr13I	GGNCC	2 cut(s)	64, 266
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	85, 511, 535
CviAII	CATG	4 cut(s)	478, 541, 691, 696
CviQI	GTAC	3 cut(s)	85, 511, 535
DpnI	GATC	3 cut(s)	476, 547, 594
DpnII	GATC	3 cut(s)	474, 545, 592
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	453, 892
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	2 cut(s)	453, 892
Eco130I	CCWWGG	4 cut(s)	262, 331, 540, 621
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	64, 266
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	38, 49
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	4 cut(s)	262, 331, 540, 621
EcoT22I	ATGCAT	1 cut(s)	717
ErhI	CCWWGG	4 cut(s)	262, 331, 540, 621
FaeI	CATG	4 cut(s)	481, 544, 694, 699
FalI	AAGNNNNNCTT	2 cut(s)	869, 901
FatI	CATG	4 cut(s)	477, 540, 690, 695
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	2 cut(s)	474, 592
Fnu4HI	GCNGC	2 cut(s)	401, 771
FokI	GGATG	4 cut(s)	191, 301, 419, 638
Fsp4HI	GCNGC	2 cut(s)	401, 771
FspBI	CTAG	1 cut(s)	821
GluI	GCNGC	2 cut(s)	401, 771
HapII	CCGG	2 cut(s)	29, 551
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	481, 544, 694, 699
HinfI	GANTC	8 cut(s)	11, 25, 326, 358, 436, 683, 724, 908
HpaII	CCGG	2 cut(s)	29, 551
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	513, 537
Hpy188I	TCNGA	3 cut(s)	10, 363, 892
Hpy188III	TCNNGA	3 cut(s)	107, 440, 608
Hpy8I	GTNNAC	2 cut(s)	513, 537
HpyAV	CCTTC	6 cut(s)	94, 190, 218, 287, 534, 887
HpyCH4III	ACNGT	2 cut(s)	382, 501
HpyCH4V	TGCA	4 cut(s)	96, 715, 779, 919
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 776
Hsp92II	CATG	4 cut(s)	481, 544, 694, 699
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	474, 592
Kzo9I	GATC	3 cut(s)	474, 545, 592
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	3 cut(s)	286, 699, 817
Lsp1109I	GCAGC	2 cut(s)	412, 782
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	821
MaeIII	GTNAC	2 cut(s)	257, 501
MalI	GATC	3 cut(s)	476, 547, 594
MboI	GATC	3 cut(s)	474, 545, 592
MboII	GAAGA	4 cut(s)	359, 470, 842, 909
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	7 cut(s)	38, 49, 121, 138, 469, 568, 939
MlyI	GAGTC	2 cut(s)	367, 677
MmeI	TCCRAC	2 cut(s)	342, 658
MnlI	CCTC	9 cut(s)	62, 103, 168, 301, 475, 531, 666, 698, 784
Mph1103I	ATGCAT	1 cut(s)	717
MroXI	GAANNNNTTC	2 cut(s)	200, 715
MseI	TTAA	4 cut(s)	167, 237, 426, 849
MslI	CAYNNNNRTG	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	2 cut(s)	29, 551
MspR9I	CCNGG	2 cut(s)	254, 551
Mva1269I	GAATGC	2 cut(s)	715, 717
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	409, 776
NciI	CCSGG	1 cut(s)	551
NcoI	CCATGG	1 cut(s)	540
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	3 cut(s)	474, 545, 592
NlaIII	CATG	4 cut(s)	481, 544, 694, 699
NlaIV	GGNNCC	4 cut(s)	86, 519, 547, 796
NsiI	ATGCAT	1 cut(s)	717
NspV	TTCGAA	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	892
PctI	GAATGC	2 cut(s)	715, 717
PdmI	GAANNNNTTC	2 cut(s)	200, 715
PfeI	GAWTC	6 cut(s)	11, 25, 326, 436, 724, 908
PkrI	GCNGC	2 cut(s)	402, 772
PleI	GAGTC	2 cut(s)	366, 677
PpsI	GAGTC	2 cut(s)	366, 677
Psp6I	CCWGG	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	4 cut(s)	86, 519, 547, 796
PspPI	GGNCC	2 cut(s)	64, 266
PsuI	RGATCY	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	3 cut(s)	86, 512, 536
RsaNI	GTAC	3 cut(s)	85, 511, 535
RseI	CAYNNNNRTG	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	4 cut(s)	167, 237, 426, 849
SatI	GCNGC	2 cut(s)	401, 771
Sau3AI	GATC	3 cut(s)	474, 545, 592
Sau96I	GGNCC	2 cut(s)	64, 266
SchI	GAGTC	2 cut(s)	367, 677
ScrFI	CCNGG	2 cut(s)	254, 551
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 266
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	7 cut(s)	38, 49, 121, 138, 469, 568, 939
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	821
StyD4I	CCNGG	2 cut(s)	252, 549
StyI	CCWWGG	4 cut(s)	262, 331, 540, 621
TaaI	ACNGT	2 cut(s)	382, 501
TaqI	TCGA	5 cut(s)	106, 135, 588, 858, 906
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	7 cut(s)	38, 49, 121, 138, 469, 568, 939
TatI	WGTACW	2 cut(s)	510, 534
TfiI	GAWTC	6 cut(s)	11, 25, 326, 436, 724, 908
Tru1I	TTAA	4 cut(s)	167, 237, 426, 849
Tru9I	TTAA	4 cut(s)	167, 237, 426, 849
TscAI	CASTG	2 cut(s)	498, 565
TseI	GCWGC	2 cut(s)	400, 770
TspDTI	ATGAA	8 cut(s)	62, 193, 306, 339, 410, 642, 843, 871
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	2 cut(s)	498, 565
VpaK11BI	GGWCC	2 cut(s)	64, 266
XapI	RAATTY	4 cut(s)	38, 49, 469, 568
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	200, 715
XspI	CTAG	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.