Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

26916371 .. 26917227

Gene Structure 857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0153100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCAAGTCCAGGAGTCACAGGATCGGAAGCCGAGCTCTGACTCCACCTACAGCCCATTATTGCCGCCCATGGGCGTCCGCAACATCGCCGTGAACCTTCTGGTCAAGTTCCTCACCACTTCCGACGAGGCCCAAGTCGAGGCTCGCCTCATCGAGAAAGACGCCTTCGCCGCCACCAGAATGATGATCCGAACGATCTACTCCGAGGAGATCAGCGATCGCATGGTGGACGTCCTCAAGGCTAAGAACACCGGCGCTTCTGCTGCTGGAAAGGGCACCATGTTGTTGCCGGATGATGGCAGGCCTAAGCCCTTCATGGGCCTTATTATCAAGAATCTCAGCAGTCCCTCCTCTCCCTTGACACACTTCGGCACCTTCTCCACCGACGAGGCCAAAGCCCTGGCTCCCTTCATCGAGCAAGAAGCCTTCCTCGCCGTCAAGATGAAGATCCGTAAGACCTACAACCGTGAGGTCTGCAAGCGCGTGTTGGAGATCAAACACAAGAACGCCGCTGCTTCTGCTGCTGGAAACATTGCGTCGGAGACTGAGGAACTGTGGTGTGCTTGCGGCAATTGCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

193

Amino Acids

21.17

Weight (kDa)

8.32

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	234
AccB1I	GGYRCC	2 cut(s)	275, 371
AccII	CGCG	1 cut(s)	483
AciI	CCGC	5 cut(s)	65, 79, 171, 510, 567
AclWI	GGATC	3 cut(s)	30, 181, 442
AcyI	GRCGYC	3 cut(s)	75, 162, 231
AfiI	CCNNNNNNNGG	4 cut(s)	71, 139, 296, 317
AjnI	CCWGG	2 cut(s)	9, 399
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	3 cut(s)	30, 181, 442
AoxI	GGCC	4 cut(s)	129, 302, 319, 390
ApeKI	GCWGC	3 cut(s)	263, 512, 521
AsiSI	GCGATCGC	1 cut(s)	220
AspLEI	GCGC	2 cut(s)	257, 483
AspS9I	GGNCC	2 cut(s)	130, 319
AsuHPI	GGTGA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	275, 371
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	3 cut(s)	250, 499, 508
BccI	CCATC	1 cut(s)	290
BceAI	ACGGC	2 cut(s)	74, 419
BciT130I	CCWGG	2 cut(s)	11, 401
BcoDI	GTCTC	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	258
BisI	GCNGC	7 cut(s)	65, 171, 264, 510, 513, 522, 568
BlsI	GCNGC	7 cut(s)	66, 172, 265, 511, 514, 523, 569
Bme1390I	CCNGG	2 cut(s)	11, 401
BmgT120I	GGNCC	2 cut(s)	130, 319
BmiI	GGNNCC	3 cut(s)	277, 373, 405
BmrFI	CCNGG	2 cut(s)	11, 401
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	446
BsaHI	GRCGYC	3 cut(s)	75, 162, 231
BsaJI	CCNNGG	3 cut(s)	69, 204, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 139, 296, 317
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	11, 401
BseDI	CCNNGG	3 cut(s)	69, 204, 399
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	4 cut(s)	71, 139, 296, 317
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	2 cut(s)	352, 537
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	2 cut(s)	221, 340
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	250, 499, 508
Bsh1236I	CGCG	1 cut(s)	483
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	131, 304, 321, 392
BshNI	GGYRCC	2 cut(s)	275, 371
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	252, 290
BslFI	GGGAC	1 cut(s)	330
BslI	CCNNNNNNNGG	4 cut(s)	71, 139, 296, 317
BsmAI	GTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	330
BsnI	GGCC	4 cut(s)	131, 304, 321, 392
Bsp1286I	GDGCHC	2 cut(s)	38, 278
Bsp143I	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	5 cut(s)	65, 79, 171, 510, 567
BspANI	GGCC	4 cut(s)	131, 304, 321, 392
BspCNI	CTCAG	2 cut(s)	351, 538
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	3 cut(s)	277, 373, 405
BspPI	GGATC	3 cut(s)	30, 181, 442
BspT107I	GGYRCC	2 cut(s)	275, 371
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	577
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	3 cut(s)	69, 204, 399
BssMI	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
BssNI	GRCGYC	3 cut(s)	75, 162, 231
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	11, 401
Bst4CI	ACNGT	2 cut(s)	467, 555
BstACI	GRCGYC	3 cut(s)	75, 162, 231
BstC8I	GCNNGC	4 cut(s)	145, 302, 479, 565
BstDEI	CTNAG	4 cut(s)	243, 306, 338, 546
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	2 cut(s)	257, 483
BstKTI	GATC	7 cut(s)	25, 189, 198, 213, 220, 450, 495
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 263, 431, 518, 521, 573
BstNI	CCWGG	2 cut(s)	11, 401
BstSCI	CCNGG	2 cut(s)	9, 399
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	250, 499, 508
BstX2I	RGATCY	1 cut(s)	447
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	4 cut(s)	131, 304, 321, 392
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	4 cut(s)	145, 302, 479, 565
CfoI	GCGC	2 cut(s)	257, 483
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	130, 319
CseI	GACGC	3 cut(s)	64, 170, 525
CviAII	CATG	4 cut(s)	70, 223, 280, 316
DdeI	CTNAG	4 cut(s)	243, 306, 338, 546
DpnI	GATC	7 cut(s)	24, 188, 197, 212, 219, 449, 494
DpnII	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	69
Eco147I	AGGCCT	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	38
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	9, 399
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	4 cut(s)	73, 226, 283, 319
FaiI	YATR	4 cut(s)	71, 224, 281, 317
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	69, 222, 279, 315
Fnu4HI	GCNGC	7 cut(s)	65, 171, 264, 510, 513, 522, 568
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	7 cut(s)	65, 171, 264, 510, 513, 522, 568
GlaI	GCGC	2 cut(s)	256, 482
GluI	GCNGC	7 cut(s)	65, 171, 264, 510, 513, 522, 568
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	131, 304, 321, 392
HapII	CCGG	2 cut(s)	252, 290
HgaI	GACGC	3 cut(s)	64, 170, 525
HhaI	GCGC	2 cut(s)	257, 483
Hin1I	GRCGYC	3 cut(s)	75, 162, 231
Hin1II	CATG	4 cut(s)	73, 226, 283, 319
Hin6I	GCGC	2 cut(s)	255, 481
HinP1I	GCGC	2 cut(s)	255, 481
HinfI	GANTC	3 cut(s)	14, 41, 334
HpaII	CCGG	2 cut(s)	252, 290
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	94, 229
Hpy188I	TCNGA	6 cut(s)	27, 40, 124, 191, 205, 541
Hpy188III	TCNNGA	3 cut(s)	154, 331, 439
Hpy8I	GTNNAC	2 cut(s)	94, 229
Hpy99I	CGWCG	3 cut(s)	128, 389, 541
HpyAV	CCTTC	6 cut(s)	107, 175, 322, 385, 418, 436
HpyCH4III	ACNGT	2 cut(s)	467, 555
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	4, 477
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 263, 431, 518, 521, 573
HpyF3I	CTNAG	4 cut(s)	243, 306, 338, 546
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	3 cut(s)	75, 162, 231
Hsp92II	CATG	4 cut(s)	73, 226, 283, 319
HspAI	GCGC	2 cut(s)	255, 481
Kzo9I	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	3 cut(s)	250, 499, 508
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	7 cut(s)	24, 188, 197, 212, 219, 449, 494
MboI	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
MboII	GAAGA	1 cut(s)	457
MfeI	CAATTG	1 cut(s)	571
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	38, 278
MluCI	AATT	1 cut(s)	571
MlyI	GAGTC	2 cut(s)	23, 35
MmeI	TCCRAC	3 cut(s)	147, 468, 519
MslI	CAYNNNNRTG	2 cut(s)	89, 179
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	2 cut(s)	252, 290
MspR9I	CCNGG	2 cut(s)	11, 401
MunI	CAATTG	1 cut(s)	571
MvaI	CCWGG	2 cut(s)	11, 401
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	6 cut(s)	170, 263, 431, 518, 521, 573
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
NlaIII	CATG	4 cut(s)	73, 226, 283, 319
NlaIV	GGNNCC	3 cut(s)	277, 373, 405
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	15
PceI	AGGCCT	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	9
PkrI	GCNGC	7 cut(s)	66, 172, 265, 511, 514, 523, 569
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	2 cut(s)	22, 35
PpsI	GAGTC	2 cut(s)	22, 35
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	9, 399
PspGI	CCWGG	2 cut(s)	9, 399
PspN4I	GGNNCC	3 cut(s)	277, 373, 405
PspPI	GGNCC	2 cut(s)	130, 319
PsuI	RGATCY	1 cut(s)	447
PvuI	CGATCG	1 cut(s)	220
RgaI	GCGATCGC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	89, 179
SacI	GAGCTC	1 cut(s)	38
SatI	GCNGC	7 cut(s)	65, 171, 264, 510, 513, 522, 568
Sau3AI	GATC	7 cut(s)	22, 186, 195, 210, 217, 447, 492
Sau96I	GGNCC	2 cut(s)	130, 319
SchI	GAGTC	2 cut(s)	23, 35
ScrFI	CCNGG	2 cut(s)	11, 401
SduI	GDGCHC	2 cut(s)	38, 278
SetI	ASST	7 cut(s)	38, 50, 99, 234, 377, 461, 474
SfaAI	GCGATCGC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	49
SgfI	GCGATCGC	1 cut(s)	220
SgrAI	CRCCGGYG	1 cut(s)	251
SmiMI	CAYNNNNRTG	2 cut(s)	89, 179
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	571
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	5 cut(s)	65, 79, 171, 510, 567
SstI	GAGCTC	1 cut(s)	38
StuI	AGGCCT	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	9, 399
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	467, 555
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	138, 153, 414
TasI	AATT	1 cut(s)	571
TauI	GCSGC	4 cut(s)	67, 173, 512, 570
TfiI	GAWTC	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	3 cut(s)	263, 512, 521
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	304, 400, 458
TspGWI	ACGGA	1 cut(s)	440
ZraI	GACGTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.