Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

33896208 .. 33896736

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAGGGGCTTCATGCTCACATTGACAAATTATTAAGCACAATCATTTGTGATGATCAAGTTTCAGGACTTGAATTTCAAACCAAGGATGGACAATGGATCAAGTTTTCTCTATCTCCTAACTCCTTTGTATTTATTGTTGGAGATCCTCTTATGGCATGGAGCAATGGGAGAATGCATCCGGTGAATCATCGAGTCATGATGTGTGGAGAAAACGAAAGATATACTCTAGGAGCATTTGCAGTTCCAGTAGAGGGTACCATCATCAAGGCATCAAAGGAGTTGGTAGATGAAGAACATCCCCAAATTCTCAAGGACTTTGACTATATGGAATTTTCTGATTTCTCCTACTCAGCCGAAGGAAGGGTCATAGACTCAGCAAAACAAGTGTTTGTATTTGCTGGACTTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

138

Amino Acids

15.51

Weight (kDa)

4.93

Isoelectric Point (pI)

25.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	3 - 80	8.4e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AclWI	GGATC	2 cut(s)	107, 140
AcsI	RAATTY	3 cut(s)	74, 306, 332
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	254, 363
AgsI	TTSAA	2 cut(s)	74, 80
AlwI	GGATC	2 cut(s)	107, 140
ApoI	RAATTY	3 cut(s)	74, 306, 332
ArsI	GACNNNNNNTTYG	2 cut(s)	351, 383
Asp718I	GGTACC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	257
BccI	CCATC	2 cut(s)	83, 269
BclI	TGATCA	1 cut(s)	55
BfaI	CTAG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	2 cut(s)	187, 281
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 363
Bse1I	ACTGG	1 cut(s)	248
Bse3DI	GCAATG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	94, 178, 298
BseLI	CCNNNNNNNGG	2 cut(s)	254, 363
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	366, 390
BseNI	ACTGG	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	254, 363
BsmI	GAATGC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	55, 99, 145
BspCNI	CTCAG	2 cut(s)	365, 389
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	107, 140
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	55, 99, 145
BssT1I	CCWWGG	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	352, 376, 407
BstF5I	GGATG	3 cut(s)	94, 178, 298
BstKTI	GATC	3 cut(s)	58, 102, 148
BstMBI	GATC	3 cut(s)	55, 99, 145
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	94, 178, 298
CciI	TCATGA	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	3 cut(s)	14, 159, 199
CviJI	RGCY	2 cut(s)	10, 356
CviKI_1	RGCY	2 cut(s)	10, 356
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	3 cut(s)	352, 376, 407
DpnI	GATC	3 cut(s)	57, 101, 147
DpnII	GATC	3 cut(s)	55, 99, 145
Eco130I	CCWWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	17, 162, 202
FaiI	YATR	8 cut(s)	15, 155, 160, 200, 225, 327, 329, 371
FatI	CATG	3 cut(s)	13, 158, 198
FbaI	TGATCA	1 cut(s)	55
FokI	GGATG	3 cut(s)	101, 165, 285
FspBI	CTAG	1 cut(s)	230
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	3 cut(s)	17, 162, 202
HinfI	GANTC	3 cut(s)	187, 195, 374
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	2 cut(s)	66, 199
HpyAV	CCTTC	2 cut(s)	353, 357
HpyCH4V	TGCA	3 cut(s)	4, 178, 242
HpyF3I	CTNAG	3 cut(s)	352, 376, 407
Hsp92II	CATG	3 cut(s)	17, 162, 202
KpnI	GGTACC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	55, 99, 145
LmnI	GCTCC	2 cut(s)	162, 233
LpnPI	CCDG	4 cut(s)	51, 195, 261, 387
LweI	GCATC	2 cut(s)	187, 281
MaeI	CTAG	1 cut(s)	230
MalI	GATC	3 cut(s)	57, 101, 147
MboI	GATC	3 cut(s)	55, 99, 145
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	4 cut(s)	29, 74, 306, 332
MlyI	GAGTC	2 cut(s)	204, 368
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	159, 247
Mph1103I	ATGCAT	1 cut(s)	180
MseI	TTAA	1 cut(s)	35
MspI	CCGG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	180
NdeII	GATC	3 cut(s)	55, 99, 145
NlaIII	CATG	3 cut(s)	17, 162, 202
NlaIV	GGNNCC	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	180
PagI	TCATGA	1 cut(s)	198
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	187
PleI	GAGTC	2 cut(s)	203, 368
PpsI	GAGTC	2 cut(s)	203, 368
PspN4I	GGNNCC	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	3 cut(s)	55, 99, 145
SchI	GAGTC	2 cut(s)	204, 368
SfaNI	GCATC	2 cut(s)	187, 281
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	29, 74, 306, 332
SspMI	CTAG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	84
TaqI	TCGA	1 cut(s)	193
TasI	AATT	4 cut(s)	29, 74, 306, 332
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	306
XapI	RAATTY	3 cut(s)	74, 306, 332
XspI	CTAG	1 cut(s)	230
Zsp2I	ATGCAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.