Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

36817003 .. 36818467

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGGTTCAGATTCTCAATACCAAATTCCGGCAATAGAATTCACAATGAATTCGCCAGAAATGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGTTAAGAGCCGAAACCTTCTCTGCGTCAAGGAAACTCTTCAGCCTTCCACTTGAGACAAAGAAGCAGAACCTTAATCCAAAACCTTACCAGGGTTACGTTGGACCAAGTGTCCGTGCTCCCTTGTATGAAGGCTTTGGCTTTGAGGAAGCATCCAACTATGAATCCCTTGGTAGCTTGACAGAAGATATATGGAGTCATGACCAGTTTTGCCTTAATTTATGGTTATGTATAGTGATTTGTTTGTTTGTTTGTTCATGTTATATATGTTGCAACTGCGGCACTGTCATTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTAACTTGATGATTCTTGATAGCTATGGTTTGGAAGAGACATCAAATTTGATCATGGTGTCCAAGACACTGCTACGGTTACAGAAGTACACGGCACCTCCTTCAAGGGAGTACACCATGGGATCCCCGGCTCACACTGACAAGAATTTTGGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGATGAACAATGGGTCAAGTTGTCTATATCTCCTCGCTCTTTCGTCTTTGTTGTTGGAGACTCCCTCATGGCATGGAGCAATGGCAGAATGCATTCTGTGAATCATCGGGTGATGATGTGTGGGGAAAAAGAACGACATTCTTTAGCAGCATTTGCACTTCCAATAGAGGGTTCCATCATCAAGGCACAAAAGGAGCTAGTAGATGAAGACTACCCCCGTATTCTTAAAGATTTCGACTATACAGACTTTAGCAAGTTCATCTTTTCAGAAGGAAGAGCCATCGAATCACAAATGCAAGTTTTCGCATATGCTGGAATTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

338

Amino Acids

38.63

Weight (kDa)

5.07

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 90	1.1e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	188 - 282	8.4e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 583
AciI	CCGC	2 cut(s)	161, 441
AclWI	GGATC	2 cut(s)	606, 619
AcsI	RAATTY	5 cut(s)	24, 38, 49, 535, 634
AcuI	CTGAAG	1 cut(s)	187
AfaI	GTAC	3 cut(s)	86, 578, 602
AfiI	CCNNNNNNNGG	3 cut(s)	28, 254, 857
AgsI	TTSAA	3 cut(s)	594, 677, 683
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	252
AjuI	GAANNNNNNNTTGG	2 cut(s)	844, 876
AluBI	AGCT	5 cut(s)	339, 469, 478, 513, 886
AluI	AGCT	5 cut(s)	339, 469, 478, 513, 886
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	3 cut(s)	212, 521, 741
AlwI	GGATC	2 cut(s)	606, 619
ApeKI	GCWGC	2 cut(s)	466, 836
ApoI	RAATTY	5 cut(s)	24, 38, 49, 535, 634
ArsI	GACNNNNNNTTYG	4 cut(s)	520, 552, 620, 652
Asp700I	GAANNNNTTC	2 cut(s)	200, 781
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	1 cut(s)	811
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 266
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	84, 583
BbsI	GAAGAC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	478, 848
BccI	CCATC	3 cut(s)	96, 872, 977
BceAI	ACGGC	1 cut(s)	597
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	2 cut(s)	540, 658
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	3 cut(s)	212, 521, 741
BfaI	CTAG	1 cut(s)	887
BisI	GCNGC	3 cut(s)	442, 467, 837
BlsI	GCNGC	3 cut(s)	443, 468, 838
Bme1390I	CCNGG	2 cut(s)	254, 617
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	4 cut(s)	86, 585, 613, 862
BmrFI	CCNGG	2 cut(s)	254, 617
BmsI	GCATC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	903
BplI	GAGNNNNNCTC	2 cut(s)	738, 770
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	617
BsaJI	CCNNGG	6 cut(s)	67, 253, 331, 606, 615, 687
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 254, 857
Bse1I	ACTGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	6 cut(s)	67, 253, 331, 606, 615, 687
BseGI	GGATG	3 cut(s)	314, 478, 697
BseLI	CCNNNNNNNGG	3 cut(s)	28, 254, 857
BseMI	GCAATG	1 cut(s)	775
BseNI	ACTGG	1 cut(s)	367
BseRI	GAGGAG	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	478, 848
BshNI	GGYRCC	2 cut(s)	84, 583
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	29, 617
BslI	CCNNNNNNNGG	3 cut(s)	28, 254, 857
BsmAI	GTCTC	3 cut(s)	212, 521, 741
BsmI	GAATGC	2 cut(s)	781, 783
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	3 cut(s)	540, 611, 658
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	2 cut(s)	161, 441
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	86, 585, 613, 862
BspPI	GGATC	2 cut(s)	606, 619
BspQI	GCTCTTC	1 cut(s)	958
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	84, 583
BsrDI	GCAATG	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	367
BssECI	CCNNGG	6 cut(s)	67, 253, 331, 606, 615, 687
BssMI	GATC	3 cut(s)	540, 611, 658
BssT1I	CCWWGG	3 cut(s)	331, 606, 687
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	2 cut(s)	448, 567
Bst6I	CTCTTC	3 cut(s)	206, 519, 958
BstAPI	GCANNNNNTGC	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	606
BstF5I	GGATG	3 cut(s)	314, 478, 697
BstKTI	GATC	3 cut(s)	543, 614, 661
BstMAI	GTCTC	3 cut(s)	212, 521, 741
BstMBI	GATC	3 cut(s)	540, 611, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 475, 842
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	252, 615
BstV1I	GCAGC	2 cut(s)	478, 848
BstV2I	GAAGAC	1 cut(s)	903
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BtgI	CCRYGG	1 cut(s)	606
BtsCI	GGATG	3 cut(s)	314, 478, 697
BtsI	GCAGTG	1 cut(s)	557
BtsIMutI	CAGTG	3 cut(s)	444, 557, 624
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	64, 266
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	85, 577, 601
CviAII	CATG	6 cut(s)	362, 420, 544, 607, 757, 762
CviQI	GTAC	3 cut(s)	85, 577, 601
DpnI	GATC	3 cut(s)	542, 613, 660
DpnII	GATC	3 cut(s)	540, 611, 658
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	3 cut(s)	206, 519, 958
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	3 cut(s)	206, 519, 958
Eco130I	CCWWGG	3 cut(s)	331, 606, 687
Eco47I	GGWCC	2 cut(s)	64, 266
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	2 cut(s)	38, 49
EcoRII	CCWGG	1 cut(s)	252
EcoT14I	CCWWGG	3 cut(s)	331, 606, 687
EcoT22I	ATGCAT	1 cut(s)	783
ErhI	CCWWGG	3 cut(s)	331, 606, 687
FaeI	CATG	6 cut(s)	365, 423, 547, 610, 760, 765
FalI	AAGNNNNNCTT	2 cut(s)	935, 967
FatI	CATG	6 cut(s)	361, 419, 543, 606, 756, 761
FauNDI	CATATG	1 cut(s)	997
FbaI	TGATCA	2 cut(s)	540, 658
Fnu4HI	GCNGC	3 cut(s)	442, 467, 837
FokI	GGATG	3 cut(s)	301, 485, 704
Fsp4HI	GCNGC	3 cut(s)	442, 467, 837
FspBI	CTAG	1 cut(s)	887
GluI	GCNGC	3 cut(s)	442, 467, 837
HapII	CCGG	2 cut(s)	29, 617
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	365, 423, 547, 610, 760, 765
HinfI	GANTC	7 cut(s)	11, 326, 358, 502, 749, 790, 974
HpaII	CCGG	2 cut(s)	29, 617
HphI	GGTGA	1 cut(s)	811
Hpy166II	GTNNAC	2 cut(s)	579, 603
Hpy188I	TCNGA	2 cut(s)	10, 958
Hpy188III	TCNNGA	4 cut(s)	107, 362, 506, 674
Hpy8I	GTNNAC	2 cut(s)	579, 603
HpyAV	CCTTC	6 cut(s)	94, 190, 218, 287, 600, 953
HpyCH4III	ACNGT	2 cut(s)	448, 567
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	96, 435, 781, 845, 985
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 475, 842
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	6 cut(s)	365, 423, 547, 610, 760, 765
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	540, 658
Kzo9I	GATC	3 cut(s)	540, 611, 658
LguI	GCTCTTC	1 cut(s)	958
LmnI	GCTCC	3 cut(s)	286, 765, 883
LpnPI	CCDG	9 cut(s)	42, 69, 239, 266, 380, 455, 630, 654, 987
Lsp1109I	GCAGC	2 cut(s)	478, 848
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	257, 567
MalI	GATC	3 cut(s)	542, 613, 660
MboI	GATC	3 cut(s)	540, 611, 658
MboII	GAAGA	5 cut(s)	193, 359, 536, 908, 975
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	9 cut(s)	24, 38, 49, 121, 138, 379, 535, 634, 1005
MlyI	GAGTC	2 cut(s)	367, 743
MmeI	TCCRAC	3 cut(s)	244, 342, 724
MnlI	CCTC	8 cut(s)	62, 103, 168, 301, 597, 732, 764, 850
Mph1103I	ATGCAT	1 cut(s)	783
MroXI	GAANNNNTTC	2 cut(s)	200, 781
MseI	TTAA	5 cut(s)	167, 237, 378, 492, 915
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	469
MspI	CCGG	2 cut(s)	29, 617
MspR9I	CCNGG	2 cut(s)	254, 617
Mva1269I	GAATGC	2 cut(s)	781, 783
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	441, 475, 842
NciI	CCSGG	1 cut(s)	617
NcoI	CCATGG	1 cut(s)	606
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	3 cut(s)	540, 611, 658
NlaIII	CATG	6 cut(s)	365, 423, 547, 610, 760, 765
NlaIV	GGNNCC	4 cut(s)	86, 585, 613, 862
NsiI	ATGCAT	1 cut(s)	783
NspV	TTCGAA	1 cut(s)	135
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	958
PctI	GAATGC	2 cut(s)	781, 783
PdmI	GAANNNNTTC	2 cut(s)	200, 781
PfeI	GAWTC	5 cut(s)	11, 326, 502, 790, 974
PkrI	GCNGC	3 cut(s)	443, 468, 838
PleI	GAGTC	2 cut(s)	366, 743
PpsI	GAGTC	2 cut(s)	366, 743
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	4 cut(s)	86, 585, 613, 862
PspPI	GGNCC	2 cut(s)	64, 266
PsuI	RGATCY	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	469
RsaI	GTAC	3 cut(s)	86, 578, 602
RsaNI	GTAC	3 cut(s)	85, 577, 601
RseI	CAYNNNNRTG	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	958
SaqAI	TTAA	5 cut(s)	167, 237, 378, 492, 915
SatI	GCNGC	3 cut(s)	442, 467, 837
Sau3AI	GATC	3 cut(s)	540, 611, 658
Sau96I	GGNCC	2 cut(s)	64, 266
SchI	GAGTC	2 cut(s)	367, 743
ScrFI	CCNGG	2 cut(s)	254, 617
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 266
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	9 cut(s)	24, 38, 49, 121, 138, 379, 535, 634, 1005
SsiI	CCGC	2 cut(s)	161, 441
SspMI	CTAG	1 cut(s)	887
StyD4I	CCNGG	2 cut(s)	252, 615
StyI	CCWWGG	3 cut(s)	331, 606, 687
TaaI	ACNGT	2 cut(s)	448, 567
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	5 cut(s)	106, 135, 654, 924, 972
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	9 cut(s)	24, 38, 49, 121, 138, 379, 535, 634, 1005
TatI	WGTACW	2 cut(s)	576, 600
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	5 cut(s)	11, 326, 502, 790, 974
Tru1I	TTAA	5 cut(s)	167, 237, 378, 492, 915
Tru9I	TTAA	5 cut(s)	167, 237, 378, 492, 915
TscAI	CASTG	3 cut(s)	451, 564, 631
TseI	GCWGC	2 cut(s)	466, 836
TspDTI	ATGAA	8 cut(s)	62, 306, 339, 408, 476, 708, 909, 937
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	3 cut(s)	451, 564, 631
VpaK11BI	GGWCC	2 cut(s)	64, 266
XapI	RAATTY	5 cut(s)	24, 38, 49, 535, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	200, 781
XspI	CTAG	1 cut(s)	887
Zsp2I	ATGCAT	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.