Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

155568 .. 157283

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGTTCAGATTCTTATTACCAAATTCCAGCCATAGCATTCACAATCAACTCGCGGGAGGTGGACCGAGGAACTGATGAATGGTACCATCTGTGCAATATGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATAGTGTATGATAAGATACCTCCGCAGTTAAGAGCTGAAACCTTCTGTGTGTCAAGGCAACTTTTTAGCCTTCCACTTGAGAAAAAGAAGAAGAACCTTAATCCAAAGCCTTACCAGGGTTACCTTGTACCAGGTGTCCGGGCTCCGTTGTATGAGAGCTTTGGCCTAGAGAAAGCTTCCAACTATGAATCCCTTAGAAGCTTGACAGAAGAAATATCGCCTAATGGTCATGACCAGTTTTGCGCTGTCATTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTAACTTGATGATTCTTGATAGTTATGGGTTGGGAGACAAATCAAATTCGACTTTGCAGTCTAAGACACTGCCAAGACTAATGAAATACCTGGCACCTCCTTCAAAGGCCTATTCAAAGGACTACACCCTGGCGCTCCCGGCTCACGCTGACAAGGGATTGGGCACAATTCTTTGTGATGATCATGTTTCAGGTCTTGAAGTTGAAACAAAGGATGGACAATGGGTCAAGTTGTCTCTATCTCCTCGTTCCTTCGTCTTTCTTGTTGCAGATTCCCTCATGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

238

Amino Acids

26.76

Weight (kDa)

5.64

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 91	3.4e-13	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	175 - 237	2.5e-06	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 520
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	55, 161
AcsI	RAATTY	2 cut(s)	24, 472
AfaI	GTAC	2 cut(s)	86, 267
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	137, 531, 543, 626, 632
AhdI	GACNNNNNGTC	1 cut(s)	650
AjnI	CCWGG	4 cut(s)	252, 268, 516, 555
AluBI	AGCT	6 cut(s)	173, 297, 314, 339, 406, 415
AluI	AGCT	6 cut(s)	173, 297, 314, 339, 406, 415
Alw26I	GTCTC	2 cut(s)	456, 666
AoxI	GGCC	2 cut(s)	301, 534
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	24, 472
Asp718I	GGTACC	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	383, 562
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	278, 566
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	593
BanI	GGYRCC	2 cut(s)	84, 520
BanII	GRGCYC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	2 cut(s)	96, 635
BciT130I	CCWGG	4 cut(s)	254, 270, 518, 557
BclI	TGATCA	1 cut(s)	607
BcnI	CCSGG	2 cut(s)	278, 566
BcoDI	GTCTC	2 cut(s)	456, 666
BfaI	CTAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	563
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	6 cut(s)	254, 270, 278, 518, 557, 566
Bme18I	GGWCC	1 cut(s)	64
BmeRI	GACNNNNNGTC	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	86, 282, 522
BmrFI	CCNGG	6 cut(s)	254, 270, 278, 518, 557, 566
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	278, 566
BsaJI	CCNNGG	3 cut(s)	67, 253, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	373
BseBI	CCWGG	4 cut(s)	254, 270, 518, 557
BseDI	CCNNGG	3 cut(s)	67, 253, 555
BseGI	GGATG	2 cut(s)	415, 646
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	660
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	303, 536
BshNI	GGYRCC	2 cut(s)	84, 520
BsiSI	CCGG	2 cut(s)	277, 566
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmAI	GTCTC	2 cut(s)	456, 666
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	303, 536
Bsp1286I	GDGCHC	2 cut(s)	283, 593
Bsp143I	GATC	1 cut(s)	607
BspACI	CCGC	2 cut(s)	55, 161
BspANI	GGCC	2 cut(s)	303, 536
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	3 cut(s)	86, 282, 522
BspT107I	GGYRCC	2 cut(s)	84, 520
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	67, 253, 555
BssMI	GATC	1 cut(s)	607
Bst2UI	CCWGG	4 cut(s)	254, 270, 518, 557
BstDEI	CTNAG	2 cut(s)	332, 489
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	415, 646
BstFNI	CGCG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	2 cut(s)	383, 562
BstKTI	GATC	1 cut(s)	610
BstMAI	GTCTC	2 cut(s)	456, 666
BstMBI	GATC	1 cut(s)	607
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 566
BstNI	CCWGG	4 cut(s)	254, 270, 518, 557
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	6 cut(s)	252, 268, 276, 516, 555, 564
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	303, 536
BtsCI	GGATG	2 cut(s)	415, 646
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	494
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	2 cut(s)	383, 562
Cfr13I	GGNCC	1 cut(s)	64
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	85, 266
CviAII	CATG	3 cut(s)	368, 611, 706
CviQI	GTAC	2 cut(s)	85, 266
DdeI	CTNAG	2 cut(s)	332, 489
DpnI	GATC	1 cut(s)	609
DpnII	GATC	1 cut(s)	607
DrdI	GACNNNNNNGTC	1 cut(s)	484
DriI	GACNNNNNGTC	1 cut(s)	650
DseDI	GACNNNNNNGTC	1 cut(s)	484
Eam1105I	GACNNNNNGTC	1 cut(s)	650
Eco147I	AGGCCT	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	4 cut(s)	252, 268, 516, 555
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	3 cut(s)	371, 614, 709
FatI	CATG	3 cut(s)	367, 610, 705
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	422, 653
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	2 cut(s)	382, 561
GluI	GCNGC	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	303, 536
HapII	CCGG	2 cut(s)	277, 566
HhaI	GCGC	2 cut(s)	383, 562
Hin1II	CATG	3 cut(s)	371, 614, 709
Hin6I	GCGC	2 cut(s)	381, 560
HinP1I	GCGC	2 cut(s)	381, 560
HindIII	AAGCTT	2 cut(s)	312, 337
HinfI	GANTC	4 cut(s)	11, 326, 439, 698
HpaII	CCGG	2 cut(s)	277, 566
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	107, 368, 443, 623
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	4 cut(s)	190, 218, 537, 688
HpyCH4V	TGCA	3 cut(s)	96, 484, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 566
HpyF3I	CTNAG	2 cut(s)	332, 489
Hsp92II	CATG	3 cut(s)	371, 614, 709
HspAI	GCGC	2 cut(s)	381, 560
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	1 cut(s)	607
LmnI	GCTCC	2 cut(s)	286, 567
Lsp1109I	GCAGC	1 cut(s)	415
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	609
MboI	GATC	1 cut(s)	607
MboII	GAAGA	3 cut(s)	238, 241, 359
MhlI	GDGCHC	2 cut(s)	283, 593
MluCI	AATT	4 cut(s)	24, 121, 472, 594
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	7 cut(s)	52, 62, 103, 168, 534, 681, 713
MseI	TTAA	3 cut(s)	167, 237, 429
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	2 cut(s)	277, 566
MspR9I	CCNGG	6 cut(s)	254, 270, 278, 518, 557, 566
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	4 cut(s)	254, 270, 518, 557
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	412, 566
NciI	CCSGG	2 cut(s)	278, 566
NdeII	GATC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	371, 614, 709
NlaIV	GGNNCC	3 cut(s)	86, 282, 522
PagI	TCATGA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	536
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	4 cut(s)	11, 326, 439, 698
PkrI	GCNGC	1 cut(s)	405
Psp6I	CCWGG	4 cut(s)	252, 268, 516, 555
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	4 cut(s)	252, 268, 516, 555
PspN4I	GGNNCC	3 cut(s)	86, 282, 522
PspPI	GGNCC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	2 cut(s)	86, 267
RsaNI	GTAC	2 cut(s)	85, 266
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	3 cut(s)	167, 237, 429
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	607
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	6 cut(s)	254, 270, 278, 518, 557, 566
SduI	GDGCHC	2 cut(s)	283, 593
SexAI	ACCWGGT	1 cut(s)	268
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	4 cut(s)	24, 121, 472, 594
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	2 cut(s)	55, 161
SspMI	CTAG	1 cut(s)	305
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	6 cut(s)	252, 268, 276, 516, 555, 564
TaqI	TCGA	2 cut(s)	106, 476
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	4 cut(s)	24, 121, 472, 594
TfiI	GAWTC	4 cut(s)	11, 326, 439, 698
Tru1I	TTAA	3 cut(s)	167, 237, 429
Tru9I	TTAA	3 cut(s)	167, 237, 429
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	93, 339, 413, 524
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	24, 472
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.