Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

38979125 .. 38981691

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G468200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGTTCAGATTTTCGGCACGGGGTTCCTGCCATAGAGTTGTCAATGACTTCTCTGGCAGTGGACAGAGGAACTGATAAGTGGAACAGTTTGTGCAAGAGGGTTAGAGAGGCTTGTGAAAATTATGGATGTTTTGAAATAGTGTATGATAAGATACCTCTGCAGTTAAGAGCTGAGGCCTTCTCACTGGTAAGGCAACTTTTCAGCCTTCCACTGGAAACAAAGAAGAAGAATGTTAATCCAAAGCCTTTCCATGGTTACTGTGGAGAGTATCCACATGTTCGCTTGTATGAGAGCCTTGGCCTTGAAGATGCCTCCAACTTTGAAGCTCTTATTTTGAGCCTCAACACTATAGTTACTATGATGAGGCAGCTAGATGAGCTGAAGGACATGATTGAAATGATGATTCTTGATAGTTATGGTTTGGGAGAGAAATCAGATTTGATCATACCGTGCAATACGCTGCTACGGGTAATGAAGTGCGGCGCACCTCCATCAGGGGAGGAGGTAGGGCTCACTGCTCACACTGACAAACTATTGAGCGCCATCCTTTGTGAGGATCAAGTTTCAGGGATTGAATTTGAAACCAAGGACGGACAATGGGTCAAATTGTCTCTATCTCCTAGCTCCTTTCTCTTTATTGTTGGAGATCCTCTTGCATGGAGGAATGGAAGAATGCATCCTGTGAAGCATCGAGTGATGATGCGCGGAGAGAAAGAACGAATTTCGTTAGGAATATTTCCAGTTCCAACAGAGGGTACCATCATCAAGCCACCAAAGGAGCTAATGGATGAAGAACATCCCCAAATTCTTAAAGAGTTTGACTTTATGGAATTTTTTAGGTTCTTTTCTTCAGAGGAAGGAGTGGCCATTGACTCAGCAAAGCCATGGGTAAAATATTGCCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

304

Amino Acids

34.42

Weight (kDa)

5.4

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	758
AccII	CGCG	1 cut(s)	708
AciI	CCGC	2 cut(s)	483, 708
AclWI	GGATC	2 cut(s)	567, 644
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	4 cut(s)	578, 723, 807, 833
AcuI	CTGAAG	2 cut(s)	404, 837
AfaI	GTAC	1 cut(s)	760
AfiI	CCNNNNNNNGG	5 cut(s)	214, 254, 497, 556, 755
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	6 cut(s)	137, 308, 326, 398, 578, 584
AhdI	GACNNNNNGTC	1 cut(s)	602
AluBI	AGCT	6 cut(s)	173, 329, 373, 382, 627, 784
AluI	AGCT	6 cut(s)	173, 329, 373, 382, 627, 784
Alw26I	GTCTC	1 cut(s)	618
AlwI	GGATC	2 cut(s)	567, 644
AoxI	GGCC	3 cut(s)	177, 301, 867
ApeKI	GCWGC	2 cut(s)	370, 463
ApoI	RAATTY	4 cut(s)	578, 723, 807, 833
Asp718I	GGTACC	1 cut(s)	758
AspLEI	GCGC	3 cut(s)	488, 545, 708
BalI	TGGCCA	1 cut(s)	869
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	516
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	382, 450
BccI	CCATC	3 cut(s)	502, 554, 770
BciVI	GTATCC	1 cut(s)	282
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	618
BfaI	CTAG	2 cut(s)	374, 624
BfmI	CTRYAG	2 cut(s)	161, 351
BfoI	RGCGCY	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	3 cut(s)	371, 464, 484
BlsI	GCNGC	3 cut(s)	372, 465, 485
BmeRI	GACNNNNNGTC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	27, 760
BmsI	GCATC	4 cut(s)	301, 688, 693, 700
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bpu10I	CCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	4 cut(s)	253, 298, 588, 887
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 254, 497, 556, 755
Bse1I	ACTGG	3 cut(s)	192, 219, 743
BseDI	CCNNGG	4 cut(s)	253, 298, 588, 887
BseGI	GGATG	5 cut(s)	134, 546, 679, 796, 799
BseLI	CCNNNNNNNGG	5 cut(s)	214, 254, 497, 556, 755
BseMII	CTCAG	2 cut(s)	165, 891
BseNI	ACTGG	3 cut(s)	192, 219, 743
BseRI	GAGGAG	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	382, 450
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	3 cut(s)	179, 303, 869
BshNI	GGYRCC	1 cut(s)	758
BslI	CCNNNNNNNGG	5 cut(s)	214, 254, 497, 556, 755
BsmAI	GTCTC	1 cut(s)	618
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	3 cut(s)	179, 303, 869
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	444, 559, 649
Bsp19I	CCATGG	2 cut(s)	253, 887
BspACI	CCGC	2 cut(s)	483, 708
BspANI	GGCC	3 cut(s)	179, 303, 869
BspCNI	CTCAG	2 cut(s)	166, 890
BspFNI	CGCG	1 cut(s)	708
BspLI	GGNNCC	2 cut(s)	27, 760
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	2 cut(s)	567, 644
BspT107I	GGYRCC	1 cut(s)	758
BsrI	ACTGG	3 cut(s)	192, 219, 743
BssECI	CCNNGG	4 cut(s)	253, 298, 588, 887
BssMI	GATC	3 cut(s)	444, 559, 649
BssT1I	CCWWGG	4 cut(s)	253, 298, 588, 887
Bst4CI	ACNGT	3 cut(s)	89, 263, 453
BstDEI	CTNAG	2 cut(s)	174, 877
BstDSI	CCRYGG	2 cut(s)	253, 887
BstENI	CCTNNNNNAGG	2 cut(s)	495, 554
BstF5I	GGATG	5 cut(s)	134, 546, 679, 796, 799
BstFNI	CGCG	1 cut(s)	708
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	3 cut(s)	488, 545, 708
BstKTI	GATC	3 cut(s)	447, 562, 652
BstMAI	GTCTC	1 cut(s)	618
BstMBI	GATC	3 cut(s)	444, 559, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	281
BstSFI	CTRYAG	2 cut(s)	161, 351
BstUI	CGCG	1 cut(s)	708
BstV1I	GCAGC	2 cut(s)	382, 450
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	179, 303, 869
BtgI	CCRYGG	2 cut(s)	253, 887
BtsCI	GGATG	5 cut(s)	134, 546, 679, 796, 799
BtsI	GCAGTG	2 cut(s)	66, 516
BtsIMutI	CAGTG	5 cut(s)	66, 185, 212, 516, 525
CfoI	GCGC	3 cut(s)	488, 545, 708
Csp6I	GTAC	1 cut(s)	759
CviAII	CATG	5 cut(s)	254, 278, 391, 660, 888
CviQI	GTAC	1 cut(s)	759
DdeI	CTNAG	2 cut(s)	174, 877
DpnI	GATC	3 cut(s)	446, 561, 651
DpnII	GATC	3 cut(s)	444, 559, 649
DriI	GACNNNNNGTC	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	867
Eam1105I	GACNNNNNGTC	1 cut(s)	602
Eco130I	CCWWGG	4 cut(s)	253, 298, 588, 887
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	404, 837
EcoNI	CCTNNNNNAGG	2 cut(s)	495, 554
EcoT14I	CCWWGG	4 cut(s)	253, 298, 588, 887
EcoT22I	ATGCAT	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	516
ErhI	CCWWGG	4 cut(s)	253, 298, 588, 887
FaeI	CATG	5 cut(s)	257, 281, 394, 663, 891
FatI	CATG	5 cut(s)	253, 277, 390, 659, 887
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	371, 464, 484
FokI	GGATG	5 cut(s)	141, 533, 666, 786, 803
FriOI	GRGCYC	1 cut(s)	516
Fsp4HI	GCNGC	3 cut(s)	371, 464, 484
FspBI	CTAG	2 cut(s)	374, 624
GlaI	GCGC	3 cut(s)	487, 544, 707
GluI	GCNGC	3 cut(s)	371, 464, 484
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	179, 303, 869
HhaI	GCGC	3 cut(s)	488, 545, 708
Hin1II	CATG	5 cut(s)	257, 281, 394, 663, 891
Hin6I	GCGC	3 cut(s)	486, 543, 706
HinP1I	GCGC	3 cut(s)	486, 543, 706
HinfI	GANTC	2 cut(s)	406, 875
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	10, 439, 856
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	4 cut(s)	190, 218, 379, 854
HpyCH4III	ACNGT	3 cut(s)	89, 263, 453
HpyCH4V	TGCA	5 cut(s)	96, 163, 456, 659, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	174, 877
Hsp92II	CATG	5 cut(s)	257, 281, 394, 663, 891
HspAI	GCGC	3 cut(s)	486, 543, 706
KpnI	GGTACC	1 cut(s)	762
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	3 cut(s)	444, 559, 649
LmnI	GCTCC	2 cut(s)	632, 781
LpnPI	CCDG	8 cut(s)	41, 42, 173, 200, 483, 555, 696, 756
Lsp1109I	GCAGC	2 cut(s)	382, 450
LweI	GCATC	4 cut(s)	301, 688, 693, 700
MaeI	CTAG	2 cut(s)	374, 624
MaeIII	GTNAC	2 cut(s)	257, 355
MalI	GATC	3 cut(s)	446, 561, 651
MboI	GATC	3 cut(s)	444, 559, 649
MboII	GAAGA	6 cut(s)	238, 241, 320, 684, 806, 843
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	516
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	6 cut(s)	121, 578, 608, 723, 807, 833
MluNI	TGGCCA	1 cut(s)	869
MlyI	GAGTC	1 cut(s)	869
MmeI	TCCRAC	3 cut(s)	342, 625, 773
Mox20I	TGGCCA	1 cut(s)	869
Mph1103I	ATGCAT	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	3 cut(s)	167, 237, 813
Msp20I	TGGCCA	1 cut(s)	869
Mva1269I	GAATGC	1 cut(s)	681
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	1 cut(s)	379
NcoI	CCATGG	2 cut(s)	253, 887
NdeII	GATC	3 cut(s)	444, 559, 649
NlaIII	CATG	5 cut(s)	257, 281, 394, 663, 891
NlaIV	GGNNCC	2 cut(s)	27, 760
NsiI	ATGCAT	1 cut(s)	681
NspI	RCATGY	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	179
PciI	ACATGT	1 cut(s)	277
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	3 cut(s)	372, 465, 485
PleI	GAGTC	1 cut(s)	869
PpsI	GAGTC	1 cut(s)	869
PscI	ACATGT	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	27, 760
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	760
RsaNI	GTAC	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	167, 237, 813
SatI	GCNGC	3 cut(s)	371, 464, 484
Sau3AI	GATC	3 cut(s)	444, 559, 649
SchI	GAGTC	1 cut(s)	869
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	4 cut(s)	301, 688, 693, 700
SfcI	CTRYAG	2 cut(s)	161, 351
Sse9I	AATT	6 cut(s)	121, 578, 608, 723, 807, 833
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	2 cut(s)	483, 708
SspI	AATATT	2 cut(s)	738, 899
SspMI	CTAG	2 cut(s)	374, 624
StuI	AGGCCT	1 cut(s)	179
StyI	CCWWGG	4 cut(s)	253, 298, 588, 887
TaaI	ACNGT	3 cut(s)	89, 263, 453
TaqI	TCGA	1 cut(s)	694
TasI	AATT	6 cut(s)	121, 578, 608, 723, 807, 833
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	3 cut(s)	167, 237, 813
Tru9I	TTAA	3 cut(s)	167, 237, 813
TscAI	CASTG	5 cut(s)	66, 192, 219, 523, 532
TseI	GCWGC	2 cut(s)	370, 463
TspDTI	ATGAA	2 cut(s)	491, 807
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	5 cut(s)	66, 192, 219, 523, 532
XagI	CCTNNNNNAGG	2 cut(s)	495, 554
XapI	RAATTY	4 cut(s)	578, 723, 807, 833
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	2 cut(s)	374, 624
Zsp2I	ATGCAT	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.