Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8315005.1

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

49 .. 709

Gene Structure 661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8315005.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggtgaacaagttggatgacctgaagcatatgattgaagtgatgattcttgatagttatggtttgggagagaagtcaaaatcgatcatggcatctatgacactgctaaggataatgaaatacagcccacctccttctggggaatccatgcaggggctccatgctcacacagacaaagcccttagcacaattctttgtgatgatcaagtttcagggctggaaatcgaaacaaaggatggacaatggatcaagctttctttctctcccacctccttggtctttgtcgttggagatctccttatggcctggagtaatggcagaatgcatcctgcaaagcatcgagtgatgatgagtggagagaaggaacgatattctttgggacaatttgtagatccagtagaagataccatcatcaaagcaccaaaggagctagtagatgaagaacatccccgtattcttgaggactttgactatacgaaatttagcaagttcttctactcagaggaaggaaaggctgtcgacacagaaatgcagattttcgcatttgctgggattagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

186

Amino Acids

21.0

Weight (kDa)

5.12

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	519
AclWI	GGATC	2 cut(s)	254, 386
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	137, 153
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	2 cut(s)	253, 430
AluI	AGCT	2 cut(s)	253, 430
AlwI	GGATC	2 cut(s)	254, 386
AoxI	GGCC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	159
BccI	CCATC	2 cut(s)	230, 416
BciT130I	CCWGG	1 cut(s)	307
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	3 cut(s)	101, 334, 346
BpmI	CTGGAG	1 cut(s)	328
Bpu10I	CCTNAGC	2 cut(s)	107, 182
BpuEI	CTTGAG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 153
Bse1I	ACTGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	307
BseCI	ATCGAT	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	4 cut(s)	22, 241, 325, 445
BseLI	CCNNNNNNNGG	2 cut(s)	137, 153
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	395
BseYI	CCCAGC	1 cut(s)	548
BshFI	GGCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	137, 153
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp143I	GATC	5 cut(s)	84, 202, 246, 292, 391
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	1 cut(s)	512
BspDI	ATCGAT	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	254, 386
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	5 cut(s)	84, 202, 246, 292, 391
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	307
BstDEI	CTNAG	3 cut(s)	107, 182, 499
BstF5I	GGATG	4 cut(s)	22, 241, 325, 445
BstKTI	GATC	5 cut(s)	87, 205, 249, 295, 394
BstMBI	GATC	5 cut(s)	84, 202, 246, 292, 391
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	292, 391
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	2 cut(s)	292, 391
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	305
BsuTUI	ATCGAT	1 cut(s)	83
BtsCI	GGATG	4 cut(s)	22, 241, 325, 445
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	83
CviAII	CATG	3 cut(s)	88, 148, 161
CviJI	RGCY	8 cut(s)	126, 157, 179, 217, 253, 305, 430, 515
CviKI_1	RGCY	8 cut(s)	126, 157, 179, 217, 253, 305, 430, 515
DdeI	CTNAG	3 cut(s)	107, 182, 499
DpnI	GATC	5 cut(s)	86, 204, 248, 294, 393
DpnII	GATC	5 cut(s)	84, 202, 246, 292, 391
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	3 cut(s)	91, 151, 164
FaiI	YATR	9 cut(s)	30, 32, 60, 89, 98, 149, 162, 302, 474
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	3 cut(s)	87, 147, 160
FauNDI	CATATG	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	519
FokI	GGATG	4 cut(s)	29, 248, 312, 432
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	431
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	91, 151, 164
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	46, 143
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	7, 520
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	2 cut(s)	50, 458
Hpy8I	GTNNAC	2 cut(s)	7, 520
HpyAV	CCTTC	3 cut(s)	144, 355, 500
HpyCH4V	TGCA	4 cut(s)	151, 325, 332, 532
HpyF3I	CTNAG	3 cut(s)	107, 182, 499
Hsp92II	CATG	3 cut(s)	91, 151, 164
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	84, 202, 246, 292, 391
LmnI	GCTCC	2 cut(s)	162, 427
LweI	GCATC	3 cut(s)	101, 334, 346
MaeI	CTAG	1 cut(s)	431
MalI	GATC	5 cut(s)	86, 204, 248, 294, 393
MboI	GATC	5 cut(s)	84, 202, 246, 292, 391
MboII	GAAGA	3 cut(s)	413, 452, 484
MflI	RGATCY	2 cut(s)	292, 391
MhlI	GDGCHC	1 cut(s)	159
MluCI	AATT	3 cut(s)	189, 383, 479
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	141, 280, 454, 496
Mph1103I	ATGCAT	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	30
NdeII	GATC	5 cut(s)	84, 202, 246, 292, 391
NlaIII	CATG	3 cut(s)	91, 151, 164
NlaIV	GGNNCC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	46, 143
Psp6I	CCWGG	1 cut(s)	305
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	292, 391
RseI	CAYNNNNRTG	1 cut(s)	527
SalI	GTCGAC	1 cut(s)	518
Sau3AI	GATC	5 cut(s)	84, 202, 246, 292, 391
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	5 cut(s)	24, 133, 255, 272, 432
SfaNI	GCATC	3 cut(s)	101, 334, 346
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	189, 383, 479
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	4 cut(s)	83, 225, 340, 519
TasI	AATT	3 cut(s)	189, 383, 479
TfiI	GAWTC	2 cut(s)	46, 143
TscAI	CASTG	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	131, 453
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.