Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

56063874 .. 56065488

Gene Structure 1615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCCAGAAATGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGTGAGGCTTGTGAAAATTATGGTTGCTTTGAAATTGTGTATGATAAGATACCTCCGCAGTTAAGAGCCGAAACCTTCTCTGCGTCAAGGAAACTTTTCAGCCTTCCACTTGAGACAAAGAAGCAGAACCTTAATCCAAAACCTTACCACGGTTACCTTGGACCAAGTGTCCATGCTCCCTTGTATGAAGGCTTTGGCTTTGAGGAAGCATCCAATTATGAATCCCTTAGTAGCTTGACAGAAGATATATGGAGTCATGACGAGTTTTGCACTGTCATTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTAACTTGATGATTCTTGATAGCTATGGTTTGGAAGAGACATCAAATTTGATCATGGTGTCCAAGACACTGCTACGGTTACAGAAGTACACGGCACCTCCTTCAAGGGAGTACACCATGGGATCCCCGGCTCACACTGACAAGAATTTTGGCACAATCCTTTTCGATGATCAAGTTTCGGGTCTTGAAGTTCAAACCAAGGATGAACAATGGGTCAAGTTGTCTATATCTCCTCGCTCCTTCGTCTTTGTTGTTGGAGACTCCCTCATGGCATGGAGCAATGGCAGAATGCATTCTGTGAATCATCGGGTGATGATGTGTGGGGAAGAAGAACGACATTCTTTAGCAGCATTTGCACTTCCAATAGAGGGTTCCATCATCAAGGCACAAAAGGAGCTAGTAGATGAAGACTACCCCCGTATTCTTAAAGATTTCGACTATACAGACTTTAGCAAGTTCATCTTTTCAGAAGGAAGAGCCATCGAATCACAAATGCAAGTTTTCGCATATGCTGGAATTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

315

Amino Acids

36.09

Weight (kDa)

4.96

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 90	4.5e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	165 - 259	8.1e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 514
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	537, 550
AcsI	RAATTY	4 cut(s)	38, 49, 466, 565
AfaI	GTAC	3 cut(s)	86, 509, 533
AfiI	CCNNNNNNNGG	3 cut(s)	28, 254, 788
AgsI	TTSAA	4 cut(s)	137, 525, 608, 614
AhdI	GACNNNNNGTC	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AluBI	AGCT	5 cut(s)	339, 400, 409, 444, 817
AluI	AGCT	5 cut(s)	339, 400, 409, 444, 817
Alw26I	GTCTC	3 cut(s)	212, 452, 672
AlwI	GGATC	2 cut(s)	537, 550
ApeKI	GCWGC	2 cut(s)	397, 767
ApoI	RAATTY	4 cut(s)	38, 49, 466, 565
ArsI	GACNNNNNNTTYG	4 cut(s)	451, 483, 551, 583
Asp700I	GAANNNNTTC	2 cut(s)	200, 712
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 266
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	742
AvaII	GGWCC	2 cut(s)	64, 266
BamHI	GGATCC	1 cut(s)	542
BanI	GGYRCC	2 cut(s)	84, 514
BbsI	GAAGAC	1 cut(s)	834
BbvI	GCAGC	2 cut(s)	409, 779
BccI	CCATC	3 cut(s)	96, 803, 908
BceAI	ACGGC	1 cut(s)	528
BclI	TGATCA	2 cut(s)	471, 589
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	3 cut(s)	212, 452, 672
BfaI	CTAG	1 cut(s)	818
BisI	GCNGC	2 cut(s)	398, 768
BlsI	GCNGC	2 cut(s)	399, 769
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	2 cut(s)	64, 266
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	64, 266
BmiI	GGNNCC	4 cut(s)	86, 516, 544, 793
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	6 cut(s)	67, 253, 262, 537, 546, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 254, 788
Bse3DI	GCAATG	1 cut(s)	706
BseDI	CCNNGG	6 cut(s)	67, 253, 262, 537, 546, 618
BseGI	GGATG	3 cut(s)	314, 409, 628
BseLI	CCNNNNNNNGG	3 cut(s)	28, 254, 788
BseMI	GCAATG	1 cut(s)	706
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	2 cut(s)	409, 779
BshNI	GGYRCC	2 cut(s)	84, 514
BsiSI	CCGG	2 cut(s)	29, 548
BslI	CCNNNNNNNGG	3 cut(s)	28, 254, 788
BsmAI	GTCTC	3 cut(s)	212, 452, 672
BsmI	GAATGC	2 cut(s)	712, 714
Bsp143I	GATC	3 cut(s)	471, 542, 589
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	1 cut(s)	161
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	86, 516, 544, 793
BspPI	GGATC	2 cut(s)	537, 550
BspQI	GCTCTTC	1 cut(s)	889
BspT107I	GGYRCC	2 cut(s)	84, 514
BsrDI	GCAATG	1 cut(s)	706
BssECI	CCNNGG	6 cut(s)	67, 253, 262, 537, 546, 618
BssMI	GATC	3 cut(s)	471, 542, 589
BssT1I	CCWWGG	3 cut(s)	262, 537, 618
Bst4CI	ACNGT	3 cut(s)	257, 379, 498
Bst6I	CTCTTC	2 cut(s)	450, 889
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	2 cut(s)	253, 537
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	314, 409, 628
BstKTI	GATC	3 cut(s)	474, 545, 592
BstMAI	GTCTC	3 cut(s)	212, 452, 672
BstMBI	GATC	3 cut(s)	471, 542, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 773
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	546
BstV1I	GCAGC	2 cut(s)	409, 779
BstV2I	GAAGAC	1 cut(s)	834
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BtgI	CCRYGG	2 cut(s)	253, 537
BtsCI	GGATG	3 cut(s)	314, 409, 628
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	3 cut(s)	375, 488, 555
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	2 cut(s)	64, 266
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	85, 508, 532
CviAII	CATG	6 cut(s)	278, 362, 475, 538, 688, 693
CviQI	GTAC	3 cut(s)	85, 508, 532
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	3 cut(s)	473, 544, 591
DpnII	GATC	3 cut(s)	471, 542, 589
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	450, 889
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	2 cut(s)	450, 889
Eco130I	CCWWGG	3 cut(s)	262, 537, 618
Eco47I	GGWCC	2 cut(s)	64, 266
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	38, 49
EcoT14I	CCWWGG	3 cut(s)	262, 537, 618
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	3 cut(s)	262, 537, 618
FaeI	CATG	6 cut(s)	281, 365, 478, 541, 691, 696
FalI	AAGNNNNNCTT	2 cut(s)	866, 898
FatI	CATG	6 cut(s)	277, 361, 474, 537, 687, 692
FauNDI	CATATG	1 cut(s)	928
FbaI	TGATCA	2 cut(s)	471, 589
Fnu4HI	GCNGC	2 cut(s)	398, 768
FokI	GGATG	3 cut(s)	301, 416, 635
Fsp4HI	GCNGC	2 cut(s)	398, 768
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	2 cut(s)	398, 768
HapII	CCGG	2 cut(s)	29, 548
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	6 cut(s)	281, 365, 478, 541, 691, 696
HinfI	GANTC	8 cut(s)	11, 25, 326, 358, 433, 680, 721, 905
HpaII	CCGG	2 cut(s)	29, 548
HphI	GGTGA	1 cut(s)	742
Hpy166II	GTNNAC	2 cut(s)	510, 534
Hpy188I	TCNGA	2 cut(s)	10, 889
Hpy188III	TCNNGA	4 cut(s)	107, 362, 437, 605
Hpy8I	GTNNAC	2 cut(s)	510, 534
HpyAV	CCTTC	7 cut(s)	94, 190, 218, 287, 531, 670, 884
HpyCH4III	ACNGT	3 cut(s)	257, 379, 498
HpyCH4V	TGCA	5 cut(s)	96, 375, 712, 776, 916
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 773
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	6 cut(s)	281, 365, 478, 541, 691, 696
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	471, 589
Kzo9I	GATC	3 cut(s)	471, 542, 589
LguI	GCTCTTC	1 cut(s)	889
LmnI	GCTCC	4 cut(s)	286, 662, 696, 814
LpnPI	CCDG	6 cut(s)	35, 42, 69, 386, 561, 918
Lsp1109I	GCAGC	2 cut(s)	409, 779
LweI	GCATC	1 cut(s)	323
MaeI	CTAG	1 cut(s)	818
MaeIII	GTNAC	2 cut(s)	257, 498
MalI	GATC	3 cut(s)	473, 544, 591
MboI	GATC	3 cut(s)	471, 542, 589
MboII	GAAGA	6 cut(s)	359, 467, 758, 761, 839, 906
MflI	RGATCY	1 cut(s)	542
MluCI	AATT	8 cut(s)	38, 49, 121, 138, 319, 466, 565, 936
MlyI	GAGTC	2 cut(s)	367, 674
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	8 cut(s)	62, 103, 168, 301, 528, 663, 695, 781
Mph1103I	ATGCAT	1 cut(s)	714
MroXI	GAANNNNTTC	2 cut(s)	200, 712
MseI	TTAA	4 cut(s)	167, 237, 423, 846
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	2 cut(s)	29, 548
MspR9I	CCNGG	1 cut(s)	548
Mva1269I	GAATGC	2 cut(s)	712, 714
MwoI	GCNNNNNNNGC	2 cut(s)	406, 773
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	537
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	3 cut(s)	471, 542, 589
NlaIII	CATG	6 cut(s)	281, 365, 478, 541, 691, 696
NlaIV	GGNNCC	4 cut(s)	86, 516, 544, 793
NsiI	ATGCAT	1 cut(s)	714
PagI	TCATGA	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	889
PctI	GAATGC	2 cut(s)	712, 714
PdmI	GAANNNNTTC	2 cut(s)	200, 712
PfeI	GAWTC	6 cut(s)	11, 25, 326, 433, 721, 905
PkrI	GCNGC	2 cut(s)	399, 769
PleI	GAGTC	2 cut(s)	366, 674
PpsI	GAGTC	2 cut(s)	366, 674
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	4 cut(s)	86, 516, 544, 793
PspPI	GGNCC	2 cut(s)	64, 266
PsuI	RGATCY	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	86, 509, 533
RsaNI	GTAC	3 cut(s)	85, 508, 532
RseI	CAYNNNNRTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	889
SaqAI	TTAA	4 cut(s)	167, 237, 423, 846
SatI	GCNGC	2 cut(s)	398, 768
Sau3AI	GATC	3 cut(s)	471, 542, 589
Sau96I	GGNCC	2 cut(s)	64, 266
SchI	GAGTC	2 cut(s)	367, 674
ScrFI	CCNGG	1 cut(s)	548
SfaNI	GCATC	1 cut(s)	323
SinI	GGWCC	2 cut(s)	64, 266
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	8 cut(s)	38, 49, 121, 138, 319, 466, 565, 936
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	818
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	3 cut(s)	262, 537, 618
TaaI	ACNGT	3 cut(s)	257, 379, 498
TaqI	TCGA	3 cut(s)	585, 855, 903
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	8 cut(s)	38, 49, 121, 138, 319, 466, 565, 936
TatI	WGTACW	2 cut(s)	507, 531
TfiI	GAWTC	6 cut(s)	11, 25, 326, 433, 721, 905
Tru1I	TTAA	4 cut(s)	167, 237, 423, 846
Tru9I	TTAA	4 cut(s)	167, 237, 423, 846
TscAI	CASTG	3 cut(s)	382, 495, 562
TseI	GCWGC	2 cut(s)	397, 767
TspDTI	ATGAA	7 cut(s)	62, 306, 339, 407, 639, 840, 868
TspRI	CASTG	3 cut(s)	382, 495, 562
VpaK11BI	GGWCC	2 cut(s)	64, 266
XapI	RAATTY	4 cut(s)	38, 49, 466, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	200, 712
XspI	CTAG	1 cut(s)	818
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.