Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

19556311 .. 19558211

Gene Structure 1901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGATCAAGAAACAGAGCAAAGAAGCTATTGGAGAAGATGGAGTAAGCAAGACTTCTTCCCGGAACCTACGTTCCAAAACTTCACTTCCTACAAAGAAGCCCTCTTCGACACTCCCTCCCGCCTCAAGGACCGCCTCATCAACCGCTCCACCGACTCCTTCGAGCTCCTCCAACTCCCCAAGCAAAGCGAAAACACAATGAAGCGTTGCCTTACGTGGTGGGACTTGGTCTGGCTCAGCTTCGGCTCCGTCGTCGGCTCCGGCATTTTTGTCATCACAGGCGAGGCCACTCTCCAAGCTGGACCCGCCATTGTCTTGTCCTATGCAATCTCCGGCCTCTCTGCATTGCTATCTGTGATGTGCTACACCGAGTTCGCTGTTGAGATTCCAGTTGCAGGCGGGTCTTTTTCGTATCTCCGGATCGAACTAGGAGATTTCGTGGCGTTTATTGCGGCAGGGAACATTCTCTTGGAGGCTGTTGTTGGTGCAGCCGGACTAGGCCGGTCTTGGTCTTCTTACTTCGCCAGCATTATCAGTTCTAACACCAATTTGCTGCGATTTTCGGTACAATCTTTACCTGATGGTTTCAATCTTTTGGACCCTATTGCTGTTCTGGTGATTCTAGTTGCTAATGGTATAGCAATGAGTGGGACAAGTAGGACTTCTATTTTGAATTGGGTTACTTCTATTGCTAGTGCTGTTGTCATTGTGTTTATCATAGCAGTTGGGTTTTCTCATGGCAAAACTTCAAATTTGGAGCCTTTTTTCCCATATTGCGCAGAGGGTGTCTTCAAGGCTTCAGCTCTGGTTTATTGGTCTTACACTGGGTTTGATCTGGTTGCAACAATGGCCGAGGAAGTAAAGCGGCCGTCGAAGGATATACCAGTAGGTTTGATCGGTTCTATGAGCCTGATCACTATAATATATTGCTTGATGTCTTTGGGTTTGGTTATGATGCAGAAGTACACACAAATTAGTGCAGATGTTGCCTATTCGGCCGCTTTTCAAGCTGTTGGGATGAACTGGGCCAAGTACTTGGTGAGTATATGTGCTCTCAAGGGAATGACTACAAGCTTGCTGGTTTGCTCTCTTGGGCAAGGAAGGTATACCACTCAGATTGCAAGAGCTCATATGATTCCTCCCTGGTTCGCTTTGGTCCACCCAAAAACTGGAACCCCAATCTACGCTACTATTTTGGTGACCATAACTAGTGCTGTTGTAGCACTGTTCTCTAGTCTTGATATCCTGTCGAGTGTCTTCTCTTTCAGTACACTTGCTATATTTACTTTCGTGGCTATTGCATTGCTGGTGAGGCGCTATTATGTTAGGGATGTGACACCAAGAAACGACTTAGCCAAGTTTCTTACAAGTTTGTTTGTTATAGTTGGTTCTTCAATCGGAATTGCAGCGCTTTGGAATTCAAATGTGCGAGGGTGGATTTGGTATGTAGTGGCCGCTTCAATTTGGTTACTTGGGACTTTATGGATGGCATTGCTTCCGAAGCAAAGAGTTGCCAAGGTTTGGGGTGTTCCACTAGTTCCATGGTTGCCTGCATTGTCAATTGGTATTAATGTTTTCCTCATTGGGTCTCTAGGCTACCTTGCATTCTTGAGGTTCGCCATTTGCACCGCGGTAATGGTTGTCTACTATTTGTTGGTTGGTGTACATGCGACATATGATGTTGCTCACCAGATTGACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

567

Amino Acids

62.23

Weight (kDa)

8.68

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	71 - 490	4.1e-47	Amino acid permease
AA_permease	PF00324	76 - 472	4.4e-26	Amino acid permease
AA_permease_C	PF13906	508 - 557	8.5e-16	C-terminus of AA_permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	778
AccB7I	CCANNNNNTGG	2 cut(s)	1169, 1521
AccBSI	CCGCTC	1 cut(s)	147
AccI	GTMKAC	2 cut(s)	1106, 1644
AccII	CGCG	1 cut(s)	1631
AccIII	TCCGGA	1 cut(s)	417
AclWI	GGATC	2 cut(s)	12, 428
AcoI	YGGCCR	4 cut(s)	849, 866, 996, 1452
AcsI	RAATTY	2 cut(s)	751, 1417
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	5 cut(s)	567, 965, 1034, 1270, 1665
AfeI	AGCGCT	1 cut(s)	1410
AfiI	CCNNNNNNNGG	4 cut(s)	127, 395, 1169, 1521
AgsI	TTSAA	8 cut(s)	589, 673, 750, 793, 1007, 1395, 1422, 1461
AhlI	ACTAGT	2 cut(s)	1208, 1534
AjnI	CCWGG	1 cut(s)	1142
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AloI	GAACNNNNNNTCC	4 cut(s)	56, 57, 88, 89
AluBI	AGCT	8 cut(s)	27, 166, 240, 299, 803, 1010, 1074, 1127
AluI	AGCT	8 cut(s)	27, 166, 240, 299, 803, 1010, 1074, 1127
Alw21I	GWGCWC	3 cut(s)	168, 1054, 1129
Alw26I	GTCTC	1 cut(s)	1593
AlwI	GGATC	2 cut(s)	12, 428
Aor13HI	TCCGGA	1 cut(s)	417
Aor51HI	AGCGCT	1 cut(s)	1410
AoxI	GGCC	8 cut(s)	285, 334, 499, 849, 866, 996, 1026, 1452
ApeKI	GCWGC	3 cut(s)	488, 553, 1406
ApoI	RAATTY	2 cut(s)	751, 1417
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AseI	ATTAAT	1 cut(s)	1569
AspLEI	GCGC	3 cut(s)	779, 1317, 1411
AspS9I	GGNCC	5 cut(s)	130, 302, 598, 1026, 1156
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	5 cut(s)	628, 1051, 1210, 1321, 1679
AvaII	GGWCC	4 cut(s)	130, 302, 598, 1156
BanII	GRGCYC	2 cut(s)	168, 1129
BbsI	GAAGAC	3 cut(s)	504, 781, 1249
Bbv12I	GWGCWC	3 cut(s)	168, 1054, 1129
BbvI	GCAGC	3 cut(s)	500, 540, 1418
BccI	CCATC	3 cut(s)	33, 575, 1480
BceAI	ACGGC	1 cut(s)	853
BciT130I	CCWGG	1 cut(s)	1144
BclI	TGATCA	1 cut(s)	912
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	1593
BcuI	ACTAGT	2 cut(s)	1208, 1534
BfaI	CTAG	8 cut(s)	428, 497, 623, 693, 1209, 1233, 1535, 1592
BfoI	RGCGCY	2 cut(s)	1318, 1412
BglI	GCCNNNNNGGC	1 cut(s)	995
BisI	GCNGC	7 cut(s)	453, 489, 554, 866, 999, 1407, 1455
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	7 cut(s)	454, 490, 555, 867, 1000, 1408, 1456
BmcAI	AGTACT	1 cut(s)	1034
Bme1390I	CCNGG	2 cut(s)	62, 1144
Bme18I	GGWCC	4 cut(s)	130, 302, 598, 1156
BmgT120I	GGNCC	5 cut(s)	130, 302, 598, 1026, 1156
BmiI	GGNNCC	7 cut(s)	66, 247, 259, 304, 600, 759, 1174
BmrFI	CCNGG	2 cut(s)	62, 1144
BmrI	ACTGGG	2 cut(s)	834, 1033
BmsI	GCATC	1 cut(s)	945
BmuI	ACTGGG	2 cut(s)	834, 1033
BpiI	GAAGAC	3 cut(s)	504, 781, 1249
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	3 cut(s)	110, 1040, 1630
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	1593
BsaJI	CCNNGG	5 cut(s)	852, 1142, 1515, 1541, 1629
BsaWI	WCCGGW	1 cut(s)	417
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 423, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 395, 1169, 1521
Bse118I	RCCGGY	1 cut(s)	501
Bse1I	ACTGG	5 cut(s)	389, 829, 884, 1028, 1174
Bse3DI	GCAATG	4 cut(s)	344, 648, 1301, 1490
BseAI	TCCGGA	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	1144
BseDI	CCNNGG	5 cut(s)	852, 1142, 1515, 1541, 1629
BseGI	GGATG	3 cut(s)	1023, 1336, 1491
BseLI	CCNNNNNNNGG	4 cut(s)	127, 395, 1169, 1521
BseMI	GCAATG	4 cut(s)	344, 648, 1301, 1490
BseMII	CTCAG	2 cut(s)	250, 1127
BseNI	ACTGG	5 cut(s)	389, 829, 884, 1028, 1174
BseRI	GAGGAG	1 cut(s)	158
BseX3I	CGGCCG	2 cut(s)	866, 996
BseXI	GCAGC	3 cut(s)	500, 540, 1418
BsgI	GTGCAG	2 cut(s)	507, 999
Bsh1236I	CGCG	1 cut(s)	1631
Bsh1285I	CGRYCG	2 cut(s)	869, 999
BshFI	GGCC	8 cut(s)	287, 336, 501, 851, 868, 998, 1028, 1454
BsiEI	CGRYCG	2 cut(s)	869, 999
BsiHKAI	GWGCWC	3 cut(s)	168, 1054, 1129
BsiSI	CCGG	6 cut(s)	62, 261, 333, 418, 492, 502
BslFI	GGGAC	3 cut(s)	236, 664, 1489
BslI	CCNNNNNNNGG	4 cut(s)	127, 395, 1169, 1521
BsmAI	GTCTC	1 cut(s)	1593
BsmFI	GGGAC	3 cut(s)	236, 664, 1489
BsmI	GAATGC	1 cut(s)	1604
BsnI	GGCC	8 cut(s)	287, 336, 501, 851, 868, 998, 1028, 1454
Bso31I	GGTCTC	1 cut(s)	1593
Bsp1286I	GDGCHC	3 cut(s)	168, 1054, 1129
Bsp13I	TCCGGA	1 cut(s)	417
Bsp1407I	TGTACA	1 cut(s)	1663
Bsp143I	GATC	5 cut(s)	4, 420, 832, 894, 912
Bsp1720I	GCTNAGC	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	1541
BspANI	GGCC	8 cut(s)	287, 336, 501, 851, 868, 998, 1028, 1454
BspCNI	CTCAG	2 cut(s)	249, 1126
BspEI	TCCGGA	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	1631
BspLI	GGNNCC	7 cut(s)	66, 247, 259, 304, 600, 759, 1174
BspPI	GGATC	2 cut(s)	12, 428
BspTNI	GGTCTC	1 cut(s)	1593
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	4 cut(s)	344, 648, 1301, 1490
BsrFI	RCCGGY	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	1663
BsrI	ACTGG	5 cut(s)	389, 829, 884, 1028, 1174
BssAI	RCCGGY	1 cut(s)	501
BssECI	CCNNGG	5 cut(s)	852, 1142, 1515, 1541, 1629
BssMI	GATC	5 cut(s)	4, 420, 832, 894, 912
BssNAI	GTATAC	1 cut(s)	1107
BssT1I	CCWWGG	2 cut(s)	1515, 1541
Bst1107I	GTATAC	1 cut(s)	1107
Bst2UI	CCWGG	1 cut(s)	1144
Bst4CI	ACNGT	1 cut(s)	1227
Bst6I	CTCTTC	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	986
BstAUI	TGTACA	1 cut(s)	1663
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	4 cut(s)	397, 526, 1076, 1551
BstDEI	CTNAG	3 cut(s)	236, 1113, 1351
BstDSI	CCRYGG	2 cut(s)	1541, 1629
BstEII	GGTNACC	1 cut(s)	1198
BstF5I	GGATG	3 cut(s)	1023, 1336, 1491
BstFNI	CGCG	1 cut(s)	1631
BstH2I	RGCGCY	2 cut(s)	1318, 1412
BstHHI	GCGC	3 cut(s)	779, 1317, 1411
BstKTI	GATC	5 cut(s)	7, 423, 835, 897, 915
BstMAI	GTCTC	1 cut(s)	1593
BstMBI	GATC	5 cut(s)	4, 420, 832, 894, 912
BstMCI	CGRYCG	2 cut(s)	869, 999
BstMWI	GCNNNNNNNGC	9 cut(s)	305, 449, 848, 986, 995, 1007, 1220, 1312, 1501
BstNI	CCWGG	1 cut(s)	1144
BstNSI	RCATGY	1 cut(s)	1670
BstPI	GGTNACC	1 cut(s)	1198
BstSCI	CCNGG	2 cut(s)	60, 1142
BstUI	CGCG	1 cut(s)	1631
BstV1I	GCAGC	3 cut(s)	500, 540, 1418
BstV2I	GAAGAC	3 cut(s)	504, 781, 1249
BstXI	CCANNNNNNTGG	1 cut(s)	1036
BstZ17I	GTATAC	1 cut(s)	1107
BstZI	CGGCCG	2 cut(s)	866, 996
BsuRI	GGCC	8 cut(s)	287, 336, 501, 851, 868, 998, 1028, 1454
BtgI	CCRYGG	2 cut(s)	1541, 1629
BtsCI	GGATG	3 cut(s)	1023, 1336, 1491
BtsIMutI	CAGTG	2 cut(s)	822, 1223
Cac8I	GCNNGC	4 cut(s)	397, 526, 1076, 1551
CfoI	GCGC	3 cut(s)	779, 1317, 1411
Cfr10I	RCCGGY	1 cut(s)	501
Cfr13I	GGNCC	5 cut(s)	130, 302, 598, 1026, 1156
Cfr42I	CCGCGG	1 cut(s)	1632
Csp6I	GTAC	5 cut(s)	566, 964, 1033, 1269, 1664
CspCI	CAANNNNNGTGG	2 cut(s)	1099, 1134
CviAII	CATG	3 cut(s)	737, 1542, 1667
CviQI	GTAC	5 cut(s)	566, 964, 1033, 1269, 1664
DdeI	CTNAG	3 cut(s)	236, 1113, 1351
DpnI	GATC	5 cut(s)	6, 422, 834, 896, 914
DpnII	GATC	5 cut(s)	4, 420, 832, 894, 912
EaeI	YGGCCR	4 cut(s)	849, 866, 996, 1452
EagI	CGGCCG	2 cut(s)	866, 996
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	2 cut(s)	166, 1127
EclXI	CGGCCG	2 cut(s)	866, 996
Eco130I	CCWWGG	2 cut(s)	1515, 1541
Eco24I	GRGCYC	2 cut(s)	168, 1129
Eco31I	GGTCTC	1 cut(s)	1593
Eco32I	GATATC	1 cut(s)	1243
Eco47I	GGWCC	4 cut(s)	130, 302, 598, 1156
Eco47III	AGCGCT	1 cut(s)	1410
Eco52I	CGGCCG	2 cut(s)	866, 996
Eco53kI	GAGCTC	2 cut(s)	166, 1127
Eco57I	CTGAAG	1 cut(s)	783
Eco91I	GGTNACC	1 cut(s)	1198
EcoICRI	GAGCTC	2 cut(s)	166, 1127
EcoO65I	GGTNACC	1 cut(s)	1198
EcoRI	GAATTC	1 cut(s)	1417
EcoRII	CCWGG	1 cut(s)	1142
EcoRV	GATATC	1 cut(s)	1243
EcoT14I	CCWWGG	2 cut(s)	1515, 1541
EcoT38I	GRGCYC	2 cut(s)	168, 1129
ErhI	CCWWGG	2 cut(s)	1515, 1541
FaeI	CATG	3 cut(s)	740, 1545, 1670
FalI	AAGNNNNNCTT	4 cut(s)	38, 70, 646, 678
FaqI	GGGAC	3 cut(s)	236, 664, 1489
FatI	CATG	3 cut(s)	736, 1541, 1666
FauI	CCCGC	3 cut(s)	128, 313, 392
FauNDI	CATATG	2 cut(s)	1131, 1675
FbaI	TGATCA	1 cut(s)	912
FblI	GTMKAC	2 cut(s)	1106, 1644
Fnu4HI	GCNGC	7 cut(s)	453, 489, 554, 866, 999, 1407, 1455
FokI	GGATG	3 cut(s)	1030, 1343, 1498
FriOI	GRGCYC	2 cut(s)	168, 1129
Fsp4HI	GCNGC	7 cut(s)	453, 489, 554, 866, 999, 1407, 1455
FspBI	CTAG	8 cut(s)	428, 497, 623, 693, 1209, 1233, 1535, 1592
FspI	TGCGCA	1 cut(s)	778
GlaI	GCGC	3 cut(s)	778, 1316, 1410
GluI	GCNGC	7 cut(s)	453, 489, 554, 866, 999, 1407, 1455
HaeII	RGCGCY	2 cut(s)	1318, 1412
HaeIII	GGCC	8 cut(s)	287, 336, 501, 851, 868, 998, 1028, 1454
HapII	CCGG	6 cut(s)	62, 261, 333, 418, 492, 502
HhaI	GCGC	3 cut(s)	779, 1317, 1411
Hin1II	CATG	3 cut(s)	740, 1545, 1670
Hin6I	GCGC	3 cut(s)	777, 1315, 1409
HinP1I	GCGC	3 cut(s)	777, 1315, 1409
HindIII	AAGCTT	1 cut(s)	1072
HinfI	GANTC	4 cut(s)	155, 385, 619, 1135
HpaII	CCGG	6 cut(s)	62, 261, 333, 418, 492, 502
HphI	GGTGA	5 cut(s)	628, 1051, 1210, 1321, 1679
Hpy166II	GTNNAC	6 cut(s)	966, 1107, 1159, 1271, 1645, 1664
Hpy188I	TCNGA	3 cut(s)	1116, 1400, 1500
Hpy188III	TCNNGA	4 cut(s)	8, 418, 1238, 1609
Hpy8I	GTNNAC	6 cut(s)	966, 1107, 1159, 1271, 1645, 1664
Hpy99I	CGWCG	3 cut(s)	254, 257, 874
HpyAV	CCTTC	3 cut(s)	169, 868, 1095
HpyCH4III	ACNGT	1 cut(s)	1227
HpyCH4IV	ACGT	2 cut(s)	71, 215
HpyF10VI	GCNNNNNNNGC	9 cut(s)	305, 449, 848, 986, 995, 1007, 1220, 1312, 1501
HpyF3I	CTNAG	3 cut(s)	236, 1113, 1351
HpySE526I	ACGT	2 cut(s)	71, 215
Hsp92II	CATG	3 cut(s)	740, 1545, 1670
HspAI	GCGC	3 cut(s)	777, 1315, 1409
Kpn2I	TCCGGA	1 cut(s)	417
Ksp22I	TGATCA	1 cut(s)	912
KspI	CCGCGG	1 cut(s)	1632
Kzo9I	GATC	5 cut(s)	4, 420, 832, 894, 912
LmnI	GCTCC	5 cut(s)	152, 171, 251, 263, 757
Lsp1109I	GCAGC	3 cut(s)	500, 540, 1418
LweI	GCATC	1 cut(s)	945
MaeI	CTAG	8 cut(s)	428, 497, 623, 693, 1209, 1233, 1535, 1592
MaeII	ACGT	2 cut(s)	71, 215
MaeIII	GTNAC	4 cut(s)	679, 1198, 1333, 1467
MalI	GATC	5 cut(s)	6, 422, 834, 896, 914
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	5 cut(s)	4, 420, 832, 894, 912
MboII	GAAGA	7 cut(s)	48, 49, 97, 504, 781, 1249, 1383
MfeI	CAATTG	1 cut(s)	1560
MhlI	GDGCHC	3 cut(s)	168, 1054, 1129
MluCI	AATT	8 cut(s)	547, 673, 751, 972, 1401, 1417, 1461, 1560
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	196
MroI	TCCGGA	1 cut(s)	417
MseI	TTAA	1 cut(s)	1569
MspA1I	CMGCKG	1 cut(s)	1631
MspI	CCGG	6 cut(s)	62, 261, 333, 418, 492, 502
MspR9I	CCNGG	2 cut(s)	62, 1144
MunI	CAATTG	1 cut(s)	1560
Mva1269I	GAATGC	1 cut(s)	1604
MvaI	CCWGG	1 cut(s)	1144
MvnI	CGCG	1 cut(s)	1631
MwoI	GCNNNNNNNGC	9 cut(s)	305, 449, 848, 986, 995, 1007, 1220, 1312, 1501
NciI	CCSGG	1 cut(s)	62
NcoI	CCATGG	1 cut(s)	1541
NdeI	CATATG	2 cut(s)	1131, 1675
NdeII	GATC	5 cut(s)	4, 420, 832, 894, 912
NlaIII	CATG	3 cut(s)	740, 1545, 1670
NlaIV	GGNNCC	7 cut(s)	66, 247, 259, 304, 600, 759, 1174
NmeAIII	GCCGAG	1 cut(s)	877
NmuCI	GTSAC	2 cut(s)	1198, 1333
NsbI	TGCGCA	1 cut(s)	778
NspI	RCATGY	1 cut(s)	1670
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PctI	GAATGC	1 cut(s)	1604
PfeI	GAWTC	3 cut(s)	385, 619, 1135
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	2 cut(s)	1169, 1521
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	7 cut(s)	454, 490, 555, 867, 1000, 1408, 1456
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
Ppu21I	YACGTR	1 cut(s)	216
PshBI	ATTAAT	1 cut(s)	1569
Psp124BI	GAGCTC	2 cut(s)	168, 1129
Psp6I	CCWGG	1 cut(s)	1142
PspEI	GGTNACC	1 cut(s)	1198
PspGI	CCWGG	1 cut(s)	1142
PspN4I	GGNNCC	7 cut(s)	66, 247, 259, 304, 600, 759, 1174
PspPI	GGNCC	5 cut(s)	130, 302, 598, 1026, 1156
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	5 cut(s)	567, 965, 1034, 1270, 1665
RsaNI	GTAC	5 cut(s)	566, 964, 1033, 1269, 1664
SacI	GAGCTC	2 cut(s)	168, 1129
SacII	CCGCGG	1 cut(s)	1632
SaqAI	TTAA	1 cut(s)	1569
SatI	GCNGC	7 cut(s)	453, 489, 554, 866, 999, 1407, 1455
Sau3AI	GATC	5 cut(s)	4, 420, 832, 894, 912
Sau96I	GGNCC	5 cut(s)	130, 302, 598, 1026, 1156
ScaI	AGTACT	1 cut(s)	1034
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	62, 1144
SduI	GDGCHC	3 cut(s)	168, 1054, 1129
SfaNI	GCATC	1 cut(s)	945
Sfr303I	CCGCGG	1 cut(s)	1632
SgrBI	CCGCGG	1 cut(s)	1632
SinI	GGWCC	4 cut(s)	130, 302, 598, 1156
SmlI	CTYRAG	3 cut(s)	125, 1055, 1609
SmoI	CTYRAG	3 cut(s)	125, 1055, 1609
SpeI	ACTAGT	2 cut(s)	1208, 1534
Sse9I	AATT	8 cut(s)	547, 673, 751, 972, 1401, 1417, 1461, 1560
SspMI	CTAG	8 cut(s)	428, 497, 623, 693, 1209, 1233, 1535, 1592
SstI	GAGCTC	2 cut(s)	168, 1129
StyD4I	CCNGG	2 cut(s)	60, 1142
StyI	CCWWGG	2 cut(s)	1515, 1541
TaaI	ACNGT	1 cut(s)	1227
TaiI	ACGT	2 cut(s)	74, 218
TaqI	TCGA	5 cut(s)	108, 162, 423, 872, 1250
TasI	AATT	8 cut(s)	547, 673, 751, 972, 1401, 1417, 1461, 1560
TatI	WGTACW	4 cut(s)	963, 1032, 1268, 1663
TauI	GCSGC	4 cut(s)	455, 868, 1001, 1457
TfiI	GAWTC	3 cut(s)	385, 619, 1135
Tru1I	TTAA	1 cut(s)	1569
Tru9I	TTAA	1 cut(s)	1569
TscAI	CASTG	2 cut(s)	829, 1230
TseFI	GTSAC	2 cut(s)	1198, 1333
TseI	GCWGC	3 cut(s)	488, 553, 1406
Tsp45I	GTSAC	2 cut(s)	1198, 1333
TspDTI	ATGAA	2 cut(s)	215, 1034
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	829, 1230
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	2 cut(s)	1169, 1521
VpaK11BI	GGWCC	4 cut(s)	130, 302, 598, 1156
VspI	ATTAAT	1 cut(s)	1569
XapI	RAATTY	2 cut(s)	751, 1417
XceI	RCATGY	1 cut(s)	1670
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1166, 1539
XmiI	GTMKAC	2 cut(s)	1106, 1644
XspI	CTAG	8 cut(s)	428, 497, 623, 693, 1209, 1233, 1535, 1592
ZrmI	AGTACT	1 cut(s)	1034

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.