Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

68690940 .. 68692438

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG533800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGTTCAGATTCTCATTACCAGATTCCAGCCATAGCATTCACAATCAACTCGCGGGAGGTGGACCGAGGAACTGATGAATGGTACCATCTGTGCAATATGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATAGTGTATGATAAGATACCTCCGCAGTTAAGAGCTGAAACCTTCTCTGTGTCAAGGCAACTTTTCAGCCTTCCACTTGAGAAAAAGAAGAAGAACCTTAATCCAAAGCCTTACCAGGGTTACCTTGCACCAAGTGTCCGGGCTCCTTTGTATGAGAGCTTTGGCCTAGAGAAAGCCTCCAACTATGAATCCCTTAGAAGCTTGACAGAAGAAATATCGCCTAATGGTCATGACCAGTTTTGCACTGTCATTTCTATGATGAAGCAGCTGGATGAGCTGAAAGATATGATTAACTTGATGATTCTTGATAGTTATGGGTTGGGAGAGAAATCAAATTCGACTTTGCAGTCTAAGACACTGCTAAGGATAATGAAATACCTGGCACCTCCTTCGAAGGACTACACTCTGGCGCTCCCGGCTCACACTGACAAGGGATTGGGCACAATTCTTTGTGATGATCATGTTTCAGGTCTTGAAGTTGAAACAAAGGATGGACAATGGGTCAAGTTGTCTCTATCTCCTCGTTCCTTCGTCTTTCTTGTTGCAGACTCCCTCATGGCATGGAGCAATGGAAGAATGCATTCTGTGAAGCATCGAGCGATGATGCGTGGAGAAAAAGAACGATATTCTTTAGGAGTATTCGCAGTTCCATTGGAGGGTTCCATCATTAAGGCACAAAAGGAGCTAGTAGATGAAGAACATCCCCAAATTCTTAAAGATTTTGATTATACAGATTTTAGCAAGTTCTTCGCTTCGGAAAAAGGAAGGGGTATTGACCCAGAAAAGCAAGTTTTCGCATATGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

318

Amino Acids

36.05

Weight (kDa)

5.95

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	25 - 90	7.7e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 261	6.6e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 520
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	55, 161
AcsI	RAATTY	2 cut(s)	472, 846
AdeI	CACNNNGTG	1 cut(s)	272
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	254, 794
AgsI	TTSAA	3 cut(s)	137, 614, 620
AhdI	GACNNNNNGTC	1 cut(s)	638
AjnI	CCWGG	2 cut(s)	252, 516
AluBI	AGCT	6 cut(s)	173, 297, 339, 406, 415, 823
AluI	AGCT	6 cut(s)	173, 297, 339, 406, 415, 823
Alw26I	GTCTC	1 cut(s)	654
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	472, 846
Asp700I	GAANNNNTTC	1 cut(s)	718
Asp718I	GGTACC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	278, 554
AsuII	TTCGAA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	581
BanI	GGYRCC	2 cut(s)	84, 520
BanII	GRGCYC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	3 cut(s)	96, 623, 809
BcgI	CGANNNNNNTGC	4 cut(s)	510, 544, 868, 902
BciT130I	CCWGG	2 cut(s)	254, 518
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	2 cut(s)	278, 554
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	2 cut(s)	305, 824
BfoI	RGCGCY	1 cut(s)	551
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	4 cut(s)	254, 278, 518, 554
Bme18I	GGWCC	1 cut(s)	64
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	4 cut(s)	86, 282, 522, 799
BmrFI	CCNGG	4 cut(s)	254, 278, 518, 554
BmsI	GCATC	2 cut(s)	732, 739
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
Bpu10I	CCTNAGC	1 cut(s)	500
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	278, 554
BsaJI	CCNNGG	2 cut(s)	67, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 794
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	2 cut(s)	254, 518
BseDI	CCNNGG	2 cut(s)	67, 253
BseGI	GGATG	3 cut(s)	415, 634, 838
BseLI	CCNNNNNNNGG	2 cut(s)	254, 794
BseMI	GCAATG	1 cut(s)	712
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	303
BshNI	GGYRCC	2 cut(s)	84, 520
BsiSI	CCGG	2 cut(s)	277, 554
BslI	CCNNNNNNNGG	2 cut(s)	254, 794
BsmAI	GTCTC	1 cut(s)	654
BsmI	GAATGC	3 cut(s)	38, 718, 720
BsnI	GGCC	1 cut(s)	303
Bsp119I	TTCGAA	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	283, 581
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	2 cut(s)	55, 161
BspANI	GGCC	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	86, 282, 522, 799
BspT104I	TTCGAA	1 cut(s)	530
BspT107I	GGYRCC	2 cut(s)	84, 520
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	67, 253
BssMI	GATC	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	254, 518
Bst4CI	ACNGT	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	530
BstDEI	CTNAG	3 cut(s)	332, 489, 500
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	415, 634, 838
BstFNI	CGCG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 554
BstNI	CCWGG	2 cut(s)	254, 518
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	252, 276, 516, 552
BstSLI	GKGCMC	1 cut(s)	581
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	752
BtsCI	GGATG	3 cut(s)	415, 634, 838
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	381, 494, 561
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	368, 599, 694, 699
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	332, 489, 500
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DraIII	CACNNNGTG	1 cut(s)	272
DrdI	GACNNNNNNGTC	1 cut(s)	484
DriI	GACNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	484
Eam1105I	GACNNNNNGTC	1 cut(s)	638
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	64
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	252, 516
EcoT22I	ATGCAT	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	283
FaeI	CATG	4 cut(s)	371, 602, 697, 702
FatI	CATG	4 cut(s)	367, 598, 693, 698
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	937
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	3 cut(s)	422, 641, 825
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	404
FspBI	CTAG	2 cut(s)	305, 824
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	1 cut(s)	404
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	2 cut(s)	277, 554
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	4 cut(s)	371, 602, 697, 702
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	5 cut(s)	11, 25, 326, 439, 686
HpaII	CCGG	2 cut(s)	277, 554
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	10, 895
Hpy188III	TCNNGA	4 cut(s)	107, 368, 443, 611
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	6 cut(s)	190, 218, 526, 537, 676, 897
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	6 cut(s)	96, 266, 381, 484, 683, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 554
HpyF3I	CTNAG	3 cut(s)	332, 489, 500
Hsp92II	CATG	4 cut(s)	371, 602, 697, 702
HspAI	GCGC	1 cut(s)	548
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	4 cut(s)	286, 555, 702, 820
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	732, 739
MaeI	CTAG	2 cut(s)	305, 824
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	6 cut(s)	238, 241, 359, 723, 845, 877
MhlI	GDGCHC	2 cut(s)	283, 581
MluCI	AATT	5 cut(s)	121, 472, 582, 846, 945
MlyI	GAGTC	1 cut(s)	680
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	9 cut(s)	52, 62, 103, 168, 325, 534, 669, 701, 787
Mph1103I	ATGCAT	1 cut(s)	720
MroXI	GAANNNNTTC	1 cut(s)	718
MseI	TTAA	5 cut(s)	167, 237, 429, 807, 852
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	2 cut(s)	277, 554
MspR9I	CCNGG	4 cut(s)	254, 278, 518, 554
Mva1269I	GAATGC	3 cut(s)	38, 718, 720
MvaI	CCWGG	2 cut(s)	254, 518
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	412, 554
NciI	CCSGG	2 cut(s)	278, 554
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	371, 602, 697, 702
NlaIV	GGNNCC	4 cut(s)	86, 282, 522, 799
NsiI	ATGCAT	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	530
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	3 cut(s)	38, 718, 720
PdmI	GAANNNNTTC	1 cut(s)	718
PfeI	GAWTC	4 cut(s)	11, 25, 326, 439
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	1 cut(s)	680
PpsI	GAGTC	1 cut(s)	680
Psp6I	CCWGG	2 cut(s)	252, 516
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	252, 516
PspN4I	GGNNCC	4 cut(s)	86, 282, 522, 799
PspPI	GGNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	768, 800
PvuII	CAGCTG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	5 cut(s)	167, 237, 429, 807, 852
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	680
ScrFI	CCNGG	4 cut(s)	254, 278, 518, 554
SduI	GDGCHC	2 cut(s)	283, 581
SfaNI	GCATC	2 cut(s)	732, 739
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	121, 472, 582, 846, 945
SsiI	CCGC	2 cut(s)	55, 161
SspMI	CTAG	2 cut(s)	305, 824
StyD4I	CCNGG	4 cut(s)	252, 276, 516, 552
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	4 cut(s)	106, 476, 530, 733
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	5 cut(s)	121, 472, 582, 846, 945
TfiI	GAWTC	4 cut(s)	11, 25, 326, 439
Tru1I	TTAA	5 cut(s)	167, 237, 429, 807, 852
Tru9I	TTAA	5 cut(s)	167, 237, 429, 807, 852
TscAI	CASTG	3 cut(s)	388, 501, 568
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	5 cut(s)	93, 339, 413, 524, 846
TspRI	CASTG	3 cut(s)	388, 501, 568
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	472, 846
XmnI	GAANNNNTTC	1 cut(s)	718
XspI	CTAG	2 cut(s)	305, 824
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.