Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

38190810 .. 38191528

Gene Structure 719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGTGAAGAAGCTGGATGAGCTTAAGGAAATGATTGAAATGATGATTCTTGATAGCTATGGTTTGGGAGAGAACTCAGATTCAATCATGGCGTGTAAGACGCTGCTACGAGCGCAGAAGTACGGGCTTGAATTTGAAACTAAAGACGGACAATGGATCAAGTTGTCTCTGCCTCCTAGTTCCTTTGTCTTTATTGCTGGAGATTCTCTTATGGCATGGAGTAATGGAAGAATGCATTCTGTAAAGCATCGAGTGATGATGTGTGGAGAACAAGAACGGTTTTTCGTTAGGAGCATTTGGAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTAGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

116

Amino Acids

13.31

Weight (kDa)

8.98

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	21 - 95	3.4e-11	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	315, 329
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	2 cut(s)	122, 317
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	38, 84, 131, 137
AluBI	AGCT	3 cut(s)	13, 22, 57
AluI	AGCT	3 cut(s)	13, 22, 57
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	235
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	2 cut(s)	315, 329
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	23
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	317, 331
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	90
BshNI	GGYRCC	2 cut(s)	315, 329
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	171
BsmI	GAATGC	2 cut(s)	235, 237
Bsp143I	GATC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	317, 331
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	2 cut(s)	315, 329
BspTI	CTTAAG	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 112
BstV1I	GCAGC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	115
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	121, 316
CviAII	CATG	2 cut(s)	88, 216
CviJI	RGCY	4 cut(s)	13, 22, 57, 127
CviKI_1	RGCY	4 cut(s)	13, 22, 57, 127
CviQI	GTAC	2 cut(s)	121, 316
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	237
FaeI	CATG	2 cut(s)	91, 219
FaiI	YATR	4 cut(s)	60, 89, 212, 217
FatI	CATG	2 cut(s)	87, 215
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	219
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	91, 219
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HinfI	GANTC	3 cut(s)	46, 80, 203
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 112
HpyF3I	CTNAG	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	91, 219
HspAI	GCGC	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	2 cut(s)	183, 319
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	177
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	19, 240
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	2 cut(s)	183, 305
Mph1103I	ATGCAT	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	1 cut(s)	24
MspCI	CTTAAG	1 cut(s)	23
Mva1269I	GAATGC	2 cut(s)	235, 237
MwoI	GCNNNNNNNGC	2 cut(s)	19, 112
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	91, 219
NlaIV	GGNNCC	2 cut(s)	317, 331
NsiI	ATGCAT	1 cut(s)	237
PctI	GAATGC	2 cut(s)	235, 237
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	3 cut(s)	46, 80, 203
PkrI	GCNGC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	317, 331
RsaI	GTAC	2 cut(s)	122, 317
RsaNI	GTAC	2 cut(s)	121, 316
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	156
SetI	ASST	3 cut(s)	15, 24, 59
SfaNI	GCATC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	131
SspMI	CTAG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	250
TasI	AATT	1 cut(s)	131
TfiI	GAWTC	3 cut(s)	46, 80, 203
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseI	GCWGC	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	162
Vha464I	CTTAAG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.