Rmu_sc0008049.1_g000042

Gibberellin 3-beta-dioxygenase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008049.1
Physical Location & Seq
Reverse (-)
151947 .. 152602
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008049.1_g000042.1.cds

Sequence Viewer

Length: 414 bp
atgaaatacctggcacctccttcgaaggactacaccctggcgctcccggctcacattgacaagggattgggcacaattctttgtgatgatcatgtttcaggtcttgaagtcgaaacaaaggatggacaatgggtcaagttgtctctatctccttgttccttcgtctttcttgttgcagattccctcatggcatggagcaatggaagaatgcattctgtgaagcatctaggagtattcgcagttccattggagggttccatcattaaggcacaaaaggagctagtagatgaagaacatccccaaattcttaaagattttgattatacagattttagcaagttcttcgcttcggaaaaaggaagggttattgacccagaaaagcaagttttcgcatatgctggaattagcacttga

Protein Analysis

137

Amino Acids

15.2

Weight (kDa)

5.45

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 13
AcsI RAATTY 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 107
AhdI GACNNNNNGTC 1 cut(s) 131
AjnI CCWGG 2 cut(s) 9, 36
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 211
AspLEI GCGC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 13
BccI CCATC 2 cut(s) 116, 266
BcgI CGANNNNNNTGC 3 cut(s) 37, 325, 359
BciT130I CCWGG 2 cut(s) 11, 38
BclI TGATCA 1 cut(s) 88
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 2 cut(s) 227, 281
BfoI RGCGCY 1 cut(s) 44
Bme1390I CCNGG 3 cut(s) 11, 38, 47
BmeRI GACNNNNNGTC 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 15, 256
BmrFI CCNGG 3 cut(s) 11, 38, 47
BmsI GCATC 1 cut(s) 232
Bpu14I TTCGAA 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 2 cut(s) 11, 38
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 2 cut(s) 127, 295
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 1 cut(s) 205
BseSI GKGCMC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 147
BsmI GAATGC 2 cut(s) 211, 213
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 88
BspLI GGNNCC 2 cut(s) 15, 256
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 11, 38
BstBI TTCGAA 1 cut(s) 23
BstF5I GGATG 2 cut(s) 127, 295
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 2 cut(s) 11, 38
BstSCI CCNGG 3 cut(s) 9, 36, 45
BstSLI GKGCMC 1 cut(s) 74
BtsCI GGATG 2 cut(s) 127, 295
CfoI GCGC 1 cut(s) 43
CviAII CATG 3 cut(s) 92, 187, 192
CviJI RGCY 2 cut(s) 50, 280
CviKI_1 RGCY 2 cut(s) 50, 280
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DriI GACNNNNNGTC 1 cut(s) 131
Eam1105I GACNNNNNGTC 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 9, 36
EcoT22I ATGCAT 1 cut(s) 213
FaeI CATG 3 cut(s) 95, 190, 195
FaiI YATR 6 cut(s) 93, 188, 193, 324, 394, 396
FatI CATG 3 cut(s) 91, 186, 191
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 1 cut(s) 88
FokI GGATG 2 cut(s) 134, 282
FspBI CTAG 2 cut(s) 227, 281
GlaI GCGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 44
HapII CCGG 1 cut(s) 47
HhaI GCGC 1 cut(s) 43
Hin1II CATG 3 cut(s) 95, 190, 195
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 19, 30, 169, 354
HpyCH4V TGCA 2 cut(s) 176, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92II CATG 3 cut(s) 95, 190, 195
HspAI GCGC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 48, 195, 277
LpnPI CCDG 7 cut(s) 23, 23, 50, 60, 84, 384, 387
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 227, 281
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 216, 302, 334
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 3 cut(s) 75, 303, 402
MnlI CCTC 3 cut(s) 27, 194, 244
Mph1103I ATGCAT 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 2 cut(s) 264, 309
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 3 cut(s) 11, 38, 47
Mva1269I GAATGC 2 cut(s) 211, 213
MvaI CCWGG 2 cut(s) 11, 38
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 47
NdeI CATATG 1 cut(s) 394
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 95, 190, 195
NlaIV GGNNCC 2 cut(s) 15, 256
NsiI ATGCAT 1 cut(s) 213
NspV TTCGAA 1 cut(s) 23
PctI GAATGC 2 cut(s) 211, 213
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 9, 36
PspGI CCWGG 2 cut(s) 9, 36
PspN4I GGNNCC 2 cut(s) 15, 256
PsrI GAACNNNNNNTAC 2 cut(s) 225, 257
SaqAI TTAA 2 cut(s) 264, 309
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 3 cut(s) 11, 38, 47
SduI GDGCHC 1 cut(s) 74
SetI ASST 4 cut(s) 12, 19, 103, 282
SfaNI GCATC 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 23
Sse9I AATT 3 cut(s) 75, 303, 402
SspMI CTAG 2 cut(s) 227, 281
StyD4I CCNGG 3 cut(s) 9, 36, 45
TaqI TCGA 2 cut(s) 23, 111
TasI AATT 3 cut(s) 75, 303, 402
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 264, 309
Tru9I TTAA 2 cut(s) 264, 309
TspDTI ATGAA 2 cut(s) 17, 303
XapI RAATTY 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 2 cut(s) 227, 281
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.