Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

37816792 .. 37824204

Gene Structure 7413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034175

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTCATGACCAGTTCTGGGGAGTGTGTGAATGGGCTCAATGCTCACACTGACAATGCATTGACCGCAATCCTTTGCGATGATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACGGACAATGGATCAAGTTGTCTCTGCCTCCTAGTTTCTTTGTCTTTATTGTTGGAGATTCTCTTATGGCATGGAGTAATGGAAGAATGCATTCTGTAAAGCATCGAGTGATGATGTGTGGAGAAAAAGAACGGTATTCGTTAGGAGCATTTGGAGTTCAAGTAGAGCGTACCATCATCAAGGCACCAAAGGAGTTAGTAGATGAAGAACATCCACAACTCTTCAAAGACTTTGACTATATGGATTTTAGGATGTTTGGCCTTTCAGCGGAAGCAATGGCCATGGACTCAGCAATGCAAATTTCGGCTTTTGCAGGAGTCCCTACCGAATATAGCAGCGGCCATGTGGCCATATTTGTCTGGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

4.87

Isoelectric Point (pI)

25.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	10 - 88	8.4e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AciI	CCGC	3 cut(s)	66, 383, 453
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	3 cut(s)	393, 454, 462
AcsI	RAATTY	2 cut(s)	101, 414
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	2 cut(s)	18, 382
AgsI	TTSAA	4 cut(s)	101, 107, 275, 340
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	4 cut(s)	373, 393, 454, 462
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	2 cut(s)	101, 414
Asp700I	GAANNNNTTC	1 cut(s)	205
BalI	TGGCCA	2 cut(s)	395, 464
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	451, 454
BlsI	GCNGC	2 cut(s)	452, 455
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 382
Bse1I	ACTGG	1 cut(s)	12
Bse3DI	GCAATG	2 cut(s)	396, 414
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	2 cut(s)	325, 372
BseLI	CCNNNNNNNGG	2 cut(s)	18, 382
BseMI	GCAATG	2 cut(s)	396, 414
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	462
BshFI	GGCC	4 cut(s)	375, 395, 456, 464
BshNI	GGYRCC	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	2 cut(s)	18, 382
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	2 cut(s)	205, 207
BsnI	GGCC	4 cut(s)	375, 395, 456, 464
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	82, 126
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	3 cut(s)	66, 383, 453
BspANI	GGCC	4 cut(s)	375, 395, 456, 464
BspCNI	CTCAG	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	396, 414
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	82, 126
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	403, 480
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	325, 372
BstKTI	GATC	2 cut(s)	85, 129
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	82, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	462
BsuRI	GGCC	4 cut(s)	375, 395, 456, 464
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	325, 372
BtsIMutI	CAGTG	1 cut(s)	48
CciI	TCATGA	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	4 cut(s)	7, 186, 397, 458
CviJI	RGCY	7 cut(s)	37, 97, 375, 395, 422, 456, 464
CviKI_1	RGCY	7 cut(s)	37, 97, 375, 395, 422, 456, 464
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	403, 480
DpnI	GATC	2 cut(s)	84, 128
DpnII	GATC	2 cut(s)	82, 126
EaeI	YGGCCR	3 cut(s)	393, 454, 462
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	2 cut(s)	61, 207
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	4 cut(s)	10, 189, 400, 461
FaiI	YATR	9 cut(s)	8, 182, 187, 354, 356, 398, 447, 459, 467
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	6, 185, 396, 457
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	451, 454
FokI	GGATG	2 cut(s)	312, 379
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	451, 454
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	2 cut(s)	451, 454
HaeIII	GGCC	4 cut(s)	375, 395, 456, 464
Hin1II	CATG	4 cut(s)	10, 189, 400, 461
HinfI	GANTC	3 cut(s)	173, 401, 432
Hpy188III	TCNNGA	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	59, 205, 412, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	403, 480
Hsp92II	CATG	4 cut(s)	10, 189, 400, 461
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 126
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	5 cut(s)	3, 25, 78, 414, 460
Lsp1109I	GCAGC	1 cut(s)	462
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	1 cut(s)	147
MalI	GATC	2 cut(s)	84, 128
MboI	GATC	2 cut(s)	82, 126
MboII	GAAGA	3 cut(s)	210, 328, 332
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	2 cut(s)	395, 464
MluCI	AATT	2 cut(s)	101, 414
MluNI	TGGCCA	2 cut(s)	395, 464
MlyI	GAGTC	2 cut(s)	395, 441
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	1 cut(s)	153
Mox20I	TGGCCA	2 cut(s)	395, 464
Mph1103I	ATGCAT	2 cut(s)	61, 207
MroXI	GAANNNNTTC	1 cut(s)	205
MscI	TGGCCA	2 cut(s)	395, 464
Msp20I	TGGCCA	2 cut(s)	395, 464
MspA1I	CMGCKG	2 cut(s)	383, 453
Mva1269I	GAATGC	2 cut(s)	205, 207
MwoI	GCNNNNNNNGC	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	2 cut(s)	82, 126
NlaIII	CATG	4 cut(s)	10, 189, 400, 461
NlaIV	GGNNCC	1 cut(s)	300
NsiI	ATGCAT	2 cut(s)	61, 207
PagI	TCATGA	1 cut(s)	6
PctI	GAATGC	2 cut(s)	205, 207
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	452, 455
PleI	GAGTC	2 cut(s)	395, 440
PpsI	GAGTC	2 cut(s)	395, 440
PspN4I	GGNNCC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SatI	GCNGC	2 cut(s)	451, 454
Sau3AI	GATC	2 cut(s)	82, 126
SchI	GAGTC	2 cut(s)	395, 441
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	226
Sse9I	AATT	2 cut(s)	101, 414
SsiI	CCGC	3 cut(s)	66, 383, 453
SspMI	CTAG	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	220
TasI	AATT	2 cut(s)	101, 414
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	2 cut(s)	101, 414
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	2 cut(s)	61, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.