Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

69519510 .. 69520600

Gene Structure 1091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28153

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACCAGTTTTGGTAAGTCGATCTTATTCATGTTAAGCCTTAATGACTGTTCAACATTTATGGGGGGAGGGAAATCAAATTCGACTTTGCAGTCTAAGACACTGCTAAGGATAATGAAATACCTGGCACCTCCTTCGGAGGACTACACCCTGGCGCTCCCGGCTCACACTGACAAGGGATTGGGCACAATTCTTTGTGATGATCATGTTTCAGGTCTTGAAGTCGAAACAAAGGATAGGCAATGGGTCAAGTTGTCTCTATCTCCTCGTTCCTGCGTCTTTCTTGTTGCAGATTCCCTCATGGCATGGAGCAATGGAAGTATGCATTCTGTGAAGCATCTAGGAGTATTCGCAGTTCCATTGGAGGGTTCCATCATTAAGGCACAAAAGGAGCTAATAGATGAAGAACATCCCCAAATTCTTAAAGATTTTGATTATACAGATTTTAGCAAGTTCTTCGCTTCGGAAAAAGGAAGGGTTATTGACCCAGAAAAGCAAGTTTTCGCATATGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

175

Amino Acids

19.34

Weight (kDa)

5.93

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	38 - 115	2.5e-12	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	79, 417
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	54, 221
AjnI	CCWGG	2 cut(s)	123, 150
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	79, 417
AspLEI	GCGC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	127
BccI	CCATC	1 cut(s)	380
BcgI	CGANNNNNNTGC	4 cut(s)	117, 151, 439, 473
BciT130I	CCWGG	2 cut(s)	125, 152
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	158
Bme1390I	CCNGG	3 cut(s)	125, 152, 161
BmiI	GGNNCC	2 cut(s)	129, 370
BmrFI	CCNGG	3 cut(s)	125, 152, 161
BmsI	GCATC	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	6
Bse3DI	GCAATG	2 cut(s)	248, 319
BseBI	CCWGG	2 cut(s)	125, 152
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	2 cut(s)	248, 319
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	21, 202
BspLI	GGNNCC	2 cut(s)	129, 370
BspT107I	GGYRCC	1 cut(s)	127
BsrDI	GCAATG	2 cut(s)	248, 319
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	21, 202
Bst2UI	CCWGG	2 cut(s)	125, 152
Bst4CI	ACNGT	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	96, 107
BstF5I	GGATG	1 cut(s)	409
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	24, 205
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	21, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	125, 152
BstSCI	CCNGG	3 cut(s)	123, 150, 159
BstSLI	GKGCMC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	101
BtsIMutI	CAGTG	2 cut(s)	101, 168
CfoI	GCGC	1 cut(s)	157
CseI	GACGC	1 cut(s)	265
CviAII	CATG	4 cut(s)	31, 206, 301, 306
CviJI	RGCY	3 cut(s)	39, 164, 394
CviKI_1	RGCY	3 cut(s)	39, 164, 394
DdeI	CTNAG	2 cut(s)	96, 107
DpnI	GATC	2 cut(s)	23, 204
DpnII	GATC	2 cut(s)	21, 202
DrdI	GACNNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	123, 150
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	4 cut(s)	34, 209, 304, 309
FaiI	YATR	9 cut(s)	32, 62, 207, 302, 307, 323, 438, 508, 510
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	4 cut(s)	30, 205, 300, 305
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	202
FokI	GGATG	1 cut(s)	396
FspBI	CTAG	1 cut(s)	341
GlaI	GCGC	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	158
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	4 cut(s)	34, 209, 304, 309
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	139, 466
Hpy188III	TCNNGA	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	144, 468
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	91, 290, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	96, 107
Hsp92II	CATG	4 cut(s)	34, 209, 304, 309
HspAI	GCGC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	21, 202
LmnI	GCTCC	3 cut(s)	162, 309, 391
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	341
MalI	GATC	2 cut(s)	23, 204
MboI	GATC	2 cut(s)	21, 202
MboII	GAAGA	2 cut(s)	416, 448
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	4 cut(s)	79, 189, 417, 516
MnlI	CCTC	6 cut(s)	62, 133, 141, 276, 308, 358
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	4 cut(s)	35, 42, 378, 423
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	3 cut(s)	125, 152, 161
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	2 cut(s)	125, 152
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	2 cut(s)	21, 202
NlaIII	CATG	4 cut(s)	34, 209, 304, 309
NlaIV	GGNNCC	2 cut(s)	129, 370
NsiI	ATGCAT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	123, 150
PspGI	CCWGG	2 cut(s)	123, 150
PspN4I	GGNNCC	2 cut(s)	129, 370
PsrI	GAACNNNNNNTAC	2 cut(s)	339, 371
SaqAI	TTAA	4 cut(s)	35, 42, 378, 423
Sau3AI	GATC	2 cut(s)	21, 202
ScrFI	CCNGG	3 cut(s)	125, 152, 161
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	4 cut(s)	126, 133, 217, 396
SfaNI	GCATC	1 cut(s)	346
Sse9I	AATT	4 cut(s)	79, 189, 417, 516
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	123, 150, 159
TaaI	ACNGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	20, 83, 225
TasI	AATT	4 cut(s)	79, 189, 417, 516
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	4 cut(s)	35, 42, 378, 423
Tru9I	TTAA	4 cut(s)	35, 42, 378, 423
TscAI	CASTG	2 cut(s)	108, 175
TspDTI	ATGAA	3 cut(s)	19, 131, 417
TspRI	CASTG	2 cut(s)	108, 175
XapI	RAATTY	2 cut(s)	79, 417
XspI	CTAG	1 cut(s)	341
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.