Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

85719325 .. 85720778

Gene Structure 1454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGTTCAGATTCTCAATACCAGATTCCGGCAATAGAATTCACAATGAATTCGCTTGAAGTGGACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGTCAAAGGCCAAAACCCTTACAGCTTCAAGGAAACTTTACAGCCTTCCACTTGAGACAAAGAACAACCTTACCCCAAACCTTTACGAGGGTTACTTTGGACCGATTGTCACTGCTCCCTTGTTAGAAGGCTTTGGCTTTCAGGAAGCATCCAACTATGAATCCCTTAGAAGCTTCACAGAAGAAATATGGTCTCAAGACCAGTTTTGCACTATCCTTTCTATGATGAAGCAGCTGGATGAGCTGAAACATATGATTCACTTGATGATTCTTGATAGCTATGGTTTGGAAAAATCATCAAATTTGATCATGGTGTCTAAGACGCTGCTACGGTTACATAAGTATACGACACCTCCTTCAGGGGAGTACGCGATGGCTGCCTCGGCTCACACTGACAAGGCATTTAGCACAATCCTTTTCGATGATCAAGTTTCAGGTCTTGAAGTTCAAACCAAGGACGAACAATGGGTCAAGTTGCCTATATCTCCTTGCTCTTTCATCTTTCTTGTTGGAGACTTCCTCATGGCATGGAGCAGTGGCAGAATGCATTCTGTGAAGCATCGGGTGATGATGTGTGGAGAAAAAGAACGACATTCCTTAATAGCAGCTGCTCTTCCAATAGAGGGTTCCGTCATCAAAGCACAAAAGGAGCTAGTAGATGAAGACTACCCACAAATTCTTAAAGATTTCGACCATACAGAATTTTTCAAGTTCATCTGTTCATCAAAAGGAAGGGCCATTGACACACAAATGCAAGTTTACGCATTTGCTGGAATTGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

316

Amino Acids

35.81

Weight (kDa)

5.43

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	24 - 86	2.9e-09	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	164 - 254	4.5e-17	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	506
AccII	CGCG	1 cut(s)	533
AciI	CCGC	1 cut(s)	161
AcsI	RAATTY	5 cut(s)	38, 49, 463, 837, 863
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	2 cut(s)	86, 530
AfiI	CCNNNNNNNGG	4 cut(s)	28, 250, 521, 785
AgsI	TTSAA	5 cut(s)	59, 192, 605, 611, 871
AhdI	GACNNNNNGTC	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	2 cut(s)	772, 804
AluBI	AGCT	7 cut(s)	188, 336, 397, 406, 441, 770, 814
AluI	AGCT	7 cut(s)	188, 336, 397, 406, 441, 770, 814
Alw26I	GTCTC	3 cut(s)	212, 360, 669
AoxI	GGCC	2 cut(s)	171, 897
ApeKI	GCWGC	5 cut(s)	394, 487, 539, 767, 770
ApoI	RAATTY	5 cut(s)	38, 49, 463, 837, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
Asp700I	GAANNNNTTC	1 cut(s)	709
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	64, 263, 897
AsuHPI	GGTGA	1 cut(s)	739
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	64, 263
BanI	GGYRCC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	831
BbvI	GCAGC	5 cut(s)	406, 474, 526, 757, 779
BccI	CCATC	2 cut(s)	96, 529
BclI	TGATCA	2 cut(s)	468, 586
BcoDI	GTCTC	3 cut(s)	212, 360, 669
BfaI	CTAG	1 cut(s)	815
BisI	GCNGC	5 cut(s)	395, 488, 540, 768, 771
BlsI	GCNGC	5 cut(s)	396, 489, 541, 769, 772
Bme18I	GGWCC	2 cut(s)	64, 263
BmeRI	GACNNNNNGTC	1 cut(s)	269
BmgT120I	GGNCC	3 cut(s)	64, 263, 897
BmiI	GGNNCC	2 cut(s)	86, 790
BmsI	GCATC	2 cut(s)	320, 730
BpiI	GAAGAC	1 cut(s)	831
BplI	GAGNNNNNCTC	2 cut(s)	666, 698
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	236, 342
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	67, 543, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 250, 521, 785
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	67, 543, 615
BseGI	GGATG	2 cut(s)	311, 406
BseLI	CCNNNNNNNGG	4 cut(s)	28, 250, 521, 785
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	5 cut(s)	406, 474, 526, 757, 779
Bsh1236I	CGCG	1 cut(s)	533
BshFI	GGCC	2 cut(s)	173, 899
BshNI	GGYRCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	4 cut(s)	28, 250, 521, 785
BsmAI	GTCTC	3 cut(s)	212, 360, 669
BsmI	GAATGC	2 cut(s)	709, 711
BsnI	GGCC	2 cut(s)	173, 899
Bso31I	GGTCTC	1 cut(s)	360
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	468, 586
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	173, 899
BspFNI	CGCG	1 cut(s)	533
BspLI	GGNNCC	2 cut(s)	86, 790
BspQI	GCTCTTC	1 cut(s)	780
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	67, 543, 615
BssMI	GATC	2 cut(s)	468, 586
BssNAI	GTATAC	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	615
Bst1107I	GTATAC	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	780
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	329, 480
BstENI	CCTNNNNNAGG	2 cut(s)	248, 519
BstF5I	GGATG	2 cut(s)	311, 406
BstFNI	CGCG	1 cut(s)	533
BstKTI	GATC	2 cut(s)	471, 589
BstMAI	GTCTC	3 cut(s)	212, 360, 669
BstMBI	GATC	2 cut(s)	468, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	403, 539, 545
BstUI	CGCG	1 cut(s)	533
BstV1I	GCAGC	5 cut(s)	406, 474, 526, 757, 779
BstV2I	GAAGAC	1 cut(s)	831
BstZ17I	GTATAC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	173, 899
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	311, 406
BtsI	GCAGTG	2 cut(s)	273, 703
BtsIMutI	CAGTG	3 cut(s)	273, 552, 703
Cfr13I	GGNCC	3 cut(s)	64, 263, 897
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	2 cut(s)	85, 529
CviAII	CATG	3 cut(s)	472, 685, 690
CviQI	GTAC	2 cut(s)	85, 529
DdeI	CTNAG	2 cut(s)	329, 480
DpnI	GATC	2 cut(s)	470, 588
DpnII	GATC	2 cut(s)	468, 586
DriI	GACNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	780
Eam1105I	GACNNNNNGTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	780
Eco130I	CCWWGG	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	2 cut(s)	64, 263
Eco57I	CTGAAG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	2 cut(s)	248, 519
EcoRI	GAATTC	2 cut(s)	38, 49
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	3 cut(s)	475, 688, 693
FatI	CATG	3 cut(s)	471, 684, 689
FauNDI	CATATG	1 cut(s)	414
FbaI	TGATCA	2 cut(s)	468, 586
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	5 cut(s)	395, 488, 540, 768, 771
FokI	GGATG	2 cut(s)	298, 413
Fsp4HI	GCNGC	5 cut(s)	395, 488, 540, 768, 771
FspBI	CTAG	1 cut(s)	815
GluI	GCNGC	5 cut(s)	395, 488, 540, 768, 771
HaeIII	GGCC	2 cut(s)	173, 899
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	493
Hin1II	CATG	3 cut(s)	475, 688, 693
HindIII	AAGCTT	1 cut(s)	334
HinfI	GANTC	5 cut(s)	11, 25, 323, 418, 430
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	3 cut(s)	64, 507, 922
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	107, 305, 359, 434, 602
Hpy8I	GTNNAC	3 cut(s)	64, 507, 922
HpyAV	CCTTC	5 cut(s)	94, 218, 284, 528, 888
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4V	TGCA	4 cut(s)	96, 372, 709, 916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	403, 539, 545
HpyF3I	CTNAG	2 cut(s)	329, 480
Hsp92II	CATG	3 cut(s)	475, 688, 693
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	468, 586
Kzo9I	GATC	2 cut(s)	468, 586
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	3 cut(s)	283, 693, 811
LpnPI	CCDG	8 cut(s)	35, 42, 290, 377, 383, 507, 582, 918
Lsp1109I	GCAGC	5 cut(s)	406, 474, 526, 757, 779
LweI	GCATC	2 cut(s)	320, 730
MaeI	CTAG	1 cut(s)	815
MaeIII	GTNAC	3 cut(s)	254, 271, 495
MalI	GATC	2 cut(s)	470, 588
MboI	GATC	2 cut(s)	468, 586
MboII	GAAGA	3 cut(s)	356, 767, 836
MluCI	AATT	8 cut(s)	38, 49, 121, 138, 463, 837, 863, 936
MmeI	TCCRAC	2 cut(s)	339, 652
MnlI	CCTC	8 cut(s)	62, 103, 168, 244, 525, 553, 692, 778
Mph1103I	ATGCAT	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	709
MseI	TTAA	2 cut(s)	761, 843
MslI	CAYNNNNRTG	1 cut(s)	911
MspA1I	CMGCKG	2 cut(s)	397, 770
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	2 cut(s)	709, 711
MvnI	CGCG	1 cut(s)	533
MwoI	GCNNNNNNNGC	3 cut(s)	403, 539, 545
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	2 cut(s)	468, 586
NlaIII	CATG	3 cut(s)	475, 688, 693
NlaIV	GGNNCC	2 cut(s)	86, 790
NmeAIII	GCCGAG	1 cut(s)	524
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	711
NspV	TTCGAA	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	780
PctI	GAATGC	2 cut(s)	709, 711
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	5 cut(s)	11, 25, 323, 418, 430
PkrI	GCNGC	5 cut(s)	396, 489, 541, 769, 772
PspN4I	GGNNCC	2 cut(s)	86, 790
PspPI	GGNCC	3 cut(s)	64, 263, 897
PvuII	CAGCTG	2 cut(s)	397, 770
RsaI	GTAC	2 cut(s)	86, 530
RsaNI	GTAC	2 cut(s)	85, 529
RseI	CAYNNNNRTG	1 cut(s)	911
SapI	GCTCTTC	1 cut(s)	780
SaqAI	TTAA	2 cut(s)	761, 843
SatI	GCNGC	5 cut(s)	395, 488, 540, 768, 771
Sau3AI	GATC	2 cut(s)	468, 586
Sau96I	GGNCC	3 cut(s)	64, 263, 897
SfaNI	GCATC	2 cut(s)	320, 730
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	64, 263
SmiMI	CAYNNNNRTG	1 cut(s)	911
SmlI	CTYRAG	2 cut(s)	215, 357
SmoI	CTYRAG	2 cut(s)	215, 357
Sse9I	AATT	8 cut(s)	38, 49, 121, 138, 463, 837, 863, 936
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	815
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	1 cut(s)	495
TaqI	TCGA	4 cut(s)	106, 135, 582, 852
TaqII	GACCGA	2 cut(s)	81, 280
TasI	AATT	8 cut(s)	38, 49, 121, 138, 463, 837, 863, 936
TfiI	GAWTC	5 cut(s)	11, 25, 323, 418, 430
Tru1I	TTAA	2 cut(s)	761, 843
Tru9I	TTAA	2 cut(s)	761, 843
TscAI	CASTG	3 cut(s)	280, 559, 703
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	5 cut(s)	394, 487, 539, 767, 770
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	7 cut(s)	62, 336, 404, 649, 837, 865, 873
TspGWI	ACGGA	1 cut(s)	781
TspRI	CASTG	3 cut(s)	280, 559, 703
VpaK11BI	GGWCC	2 cut(s)	64, 263
XagI	CCTNNNNNAGG	2 cut(s)	248, 519
XapI	RAATTY	5 cut(s)	38, 49, 463, 837, 863
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	1 cut(s)	815
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.