RLG00000008582

Gibberellin 3-beta-dioxygenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
32523182 .. 32524349
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008582

Sequence Viewer

Length: 972 bp
ATGGGTTCTGATTGTCAATACCAGATTCCTACCATAGATTTCTCAATCCATTCACTGGAAGTAGACCGAGGAACCGAAGAGTGGTACAGTTTGTGCAAGAGAGTTAGGGAGGCTTGCGAAAACAATGGTTTCTTTGAAATAGTGTATGATAAGATACCTCTGCAGTTAAGAGCAGAGACCTTCTCTATGATAAGGCAACTCTTCAGCCTTCCTCTGGAGACAAAGAAGAACTATTTTAGTTCAAGGCCTTATGGCGGTTACCTTGGACAGAATCCGAAACTTCCCTTGTTTGAGAGCTTTGGCCTTGAAGATCCTTCCAACTATGAATCCCTCAGAAGCTTCATACAACTCATGTGGCCTAATGGCCATGACAAGTTTTGCAACACTGTAATTTCTATGGTGAAGAAGTTGGATGAGCTGAAACATATGATTGAAGTGATGATTCTTGATAGTTATGGTTTGGGAGAGAAGTCAAAATCGATTATGGCATCTAAGACACTGCTAAGGATAATGAAATACAGCCCACCTCCTTCTGGGGAATCCATGCAGGGGCTCCATGCTCACACAGACAAAGCCCTTAGCACAATCCTTTGTGATGATCAAGTTTCAGGGCTGGAAATCGAAACAAAGGATGGACAATGGGTCAAACTTTCTCTCTCCTACCTCCTTGGTCTTTGTTGTTGGAGATCTCCTTATGGTAACAAGCCTTCAAATGCCTGGAGTAATGGCAGAATGCATCCTGCAAAGCATCGAGTGATGATGAGTGGGGAGAAGGAACGATATTCTTTAGGACAATTTGTAGATCCAGTAGAAGGTAGCATCATCAAAGCACCAAGGGAGCTAGTAGATGAAGAACATCCCCGTATTCTTGAGGACTTTGACTATACGAAATTTAGCAAGTTCTTCTACTCAGAGGAAGGAAAGGCTTTCGACACAGAAATGCAGATTTTTGCATTTGCTGGGATTAGTTAG

Protein Analysis

324

Amino Acids

37.06

Weight (kDa)

5.7

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 9 - 89 1.6e-14 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 168 - 269 3.3e-10 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000436)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 55
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 305, 797
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 1 cut(s) 890
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 7 cut(s) 55, 81, 214, 254, 533, 549, 812
AgsI TTSAA 5 cut(s) 137, 243, 308, 434, 711
AhdI GACNNNNNGTC 1 cut(s) 641
AjnI CCWGG 1 cut(s) 716
AluBI AGCT 4 cut(s) 297, 339, 418, 841
AluI AGCT 4 cut(s) 297, 339, 418, 841
Alw26I GTCTC 2 cut(s) 170, 212
AlwI GGATC 2 cut(s) 305, 797
AoxI GGCC 4 cut(s) 245, 301, 356, 364
ApoI RAATTY 1 cut(s) 890
AsuHPI GGTGA 1 cut(s) 412
BalI TGGCCA 1 cut(s) 366
BanII GRGCYC 1 cut(s) 555
BarI GAAGNNNNNNTAC 2 cut(s) 691, 723
BccI CCATC 1 cut(s) 626
BciT130I CCWGG 1 cut(s) 718
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 2 cut(s) 170, 212
BfaI CTAG 1 cut(s) 842
BfmI CTRYAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 686
Bme1390I CCNGG 1 cut(s) 718
BmeRI GACNNNNNGTC 1 cut(s) 641
BmiI GGNNCC 2 cut(s) 73, 554
BmrFI CCNGG 1 cut(s) 718
BmsI GCATC 4 cut(s) 497, 745, 757, 828
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 2 cut(s) 236, 739
Bpu10I CCTNAGC 2 cut(s) 503, 578
BpuEI CTTGAG 1 cut(s) 890
Bsa29I ATCGAT 1 cut(s) 479
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 67, 262, 667, 833
Bsc4I CCNNNNNNNGG 7 cut(s) 55, 81, 214, 254, 533, 549, 812
Bse1I ACTGG 2 cut(s) 60, 806
BseBI CCWGG 1 cut(s) 718
BseCI ATCGAT 1 cut(s) 479
BseDI CCNNGG 4 cut(s) 67, 262, 667, 833
BseGI GGATG 4 cut(s) 418, 637, 736, 856
BseLI CCNNNNNNNGG 7 cut(s) 55, 81, 214, 254, 533, 549, 812
BseMII CTCAG 2 cut(s) 346, 924
BseNI ACTGG 2 cut(s) 60, 806
BseYI CCCAGC 1 cut(s) 959
BshFI GGCC 4 cut(s) 247, 303, 358, 366
BshVI ATCGAT 1 cut(s) 479
BslI CCNNNNNNNGG 7 cut(s) 55, 81, 214, 254, 533, 549, 812
BsmAI GTCTC 2 cut(s) 170, 212
BsmI GAATGC 1 cut(s) 738
BsnI GGCC 4 cut(s) 247, 303, 358, 366
Bso31I GGTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 555
Bsp143I GATC 4 cut(s) 310, 598, 686, 802
BspACI CCGC 1 cut(s) 255
BspANI GGCC 4 cut(s) 247, 303, 358, 366
BspCNI CTCAG 2 cut(s) 345, 923
BspDI ATCGAT 1 cut(s) 479
BspLI GGNNCC 2 cut(s) 73, 554
BspMAI CTGCAG 1 cut(s) 165
BspPI GGATC 2 cut(s) 305, 797
BspTNI GGTCTC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 60, 806
BssECI CCNNGG 4 cut(s) 67, 262, 667, 833
BssMI GATC 4 cut(s) 310, 598, 686, 802
BssT1I CCWWGG 3 cut(s) 262, 667, 833
Bst2UI CCWGG 1 cut(s) 718
Bst4CI ACNGT 2 cut(s) 89, 388
Bst6I CTCTTC 2 cut(s) 72, 206
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 5 cut(s) 332, 492, 503, 578, 910
BstEII GGTNACC 1 cut(s) 257
BstF5I GGATG 4 cut(s) 418, 637, 736, 856
BstKTI GATC 4 cut(s) 313, 601, 689, 805
BstMAI GTCTC 2 cut(s) 170, 212
BstMBI GATC 4 cut(s) 310, 598, 686, 802
BstNI CCWGG 1 cut(s) 718
BstPI GGTNACC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 716
BstSFI CTRYAG 1 cut(s) 161
BstX2I RGATCY 3 cut(s) 310, 686, 802
BstYI RGATCY 3 cut(s) 310, 686, 802
Bsu15I ATCGAT 1 cut(s) 479
BsuRI GGCC 4 cut(s) 247, 303, 358, 366
BsuTUI ATCGAT 1 cut(s) 479
BtsCI GGATG 4 cut(s) 418, 637, 736, 856
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 3 cut(s) 53, 384, 497
Cac8I GCNNGC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 479
Csp6I GTAC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 335, 370
CviAII CATG 4 cut(s) 352, 368, 544, 557
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 5 cut(s) 332, 492, 503, 578, 910
DpnI GATC 4 cut(s) 312, 600, 688, 804
DpnII GATC 4 cut(s) 310, 598, 686, 802
DriI GACNNNNNGTC 1 cut(s) 641
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 2 cut(s) 72, 206
Eam1105I GACNNNNNGTC 1 cut(s) 641
EarI CTCTTC 2 cut(s) 72, 206
Eco130I CCWWGG 3 cut(s) 262, 667, 833
Eco147I AGGCCT 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 187
Eco91I GGTNACC 1 cut(s) 257
EcoO65I GGTNACC 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 716
EcoT14I CCWWGG 3 cut(s) 262, 667, 833
EcoT22I ATGCAT 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 3 cut(s) 262, 667, 833
FaeI CATG 4 cut(s) 355, 371, 547, 560
FatI CATG 4 cut(s) 351, 367, 543, 556
FauNDI CATATG 1 cut(s) 426
FbaI TGATCA 1 cut(s) 598
FblI GTMKAC 1 cut(s) 63
FokI GGATG 4 cut(s) 425, 644, 723, 843
FriOI GRGCYC 1 cut(s) 555
FspBI CTAG 1 cut(s) 842
GsaI CCCAGC 1 cut(s) 963
GsuI CTGGAG 2 cut(s) 236, 739
HaeIII GGCC 4 cut(s) 247, 303, 358, 366
Hin1II CATG 4 cut(s) 355, 371, 547, 560
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 5 cut(s) 25, 271, 326, 442, 539
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 10, 276, 335, 913
Hpy188III TCNNGA 3 cut(s) 215, 446, 869
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 8 cut(s) 190, 218, 324, 540, 717, 766, 806, 911
HpyCH4III ACNGT 2 cut(s) 89, 388
HpyCH4V TGCA 8 cut(s) 96, 163, 381, 547, 736, 743, 943, 953
HpyF3I CTNAG 5 cut(s) 332, 492, 503, 578, 910
Hsp92II CATG 4 cut(s) 355, 371, 547, 560
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 4 cut(s) 310, 598, 686, 802
LmnI GCTCC 2 cut(s) 558, 838
LweI GCATC 4 cut(s) 497, 745, 757, 828
MaeI CTAG 1 cut(s) 842
MaeIII GTNAC 2 cut(s) 257, 698
MalI GATC 4 cut(s) 312, 600, 688, 804
MboI GATC 4 cut(s) 310, 598, 686, 802
MboII GAAGA 7 cut(s) 89, 193, 238, 320, 415, 863, 895
MflI RGATCY 3 cut(s) 310, 686, 802
MhlI GDGCHC 1 cut(s) 555
MlsI TGGCCA 1 cut(s) 366
MluCI AATT 3 cut(s) 390, 794, 890
MluNI TGGCCA 1 cut(s) 366
MmeI TCCRAC 3 cut(s) 342, 390, 662
MnlI CCTC 9 cut(s) 62, 103, 168, 222, 341, 537, 674, 865, 907
Mox20I TGGCCA 1 cut(s) 366
Mph1103I ATGCAT 1 cut(s) 738
MscI TGGCCA 1 cut(s) 366
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 938
Msp20I TGGCCA 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 738
MvaI CCWGG 1 cut(s) 718
NdeI CATATG 1 cut(s) 426
NdeII GATC 4 cut(s) 310, 598, 686, 802
NlaIII CATG 4 cut(s) 355, 371, 547, 560
NlaIV GGNNCC 2 cut(s) 73, 554
NsiI ATGCAT 1 cut(s) 738
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 738
PfeI GAWTC 5 cut(s) 25, 271, 326, 442, 539
PflMI CCANNNNNTGG 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 716
PspEI GGTNACC 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 959
PspGI CCWGG 1 cut(s) 716
PspN4I GGNNCC 2 cut(s) 73, 554
PstI CTGCAG 1 cut(s) 165
PsuI RGATCY 3 cut(s) 310, 686, 802
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 938
SaqAI TTAA 1 cut(s) 167
Sau3AI GATC 4 cut(s) 310, 598, 686, 802
ScrFI CCNGG 1 cut(s) 718
SduI GDGCHC 1 cut(s) 555
SfaNI GCATC 4 cut(s) 497, 745, 757, 828
SfcI CTRYAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 938
SmlI CTYRAG 1 cut(s) 869
SmoI CTYRAG 1 cut(s) 869
Sse9I AATT 3 cut(s) 390, 794, 890
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 842
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 716
StyI CCWWGG 3 cut(s) 262, 667, 833
TaaI ACNGT 2 cut(s) 89, 388
TaqI TCGA 4 cut(s) 479, 621, 751, 930
TaqII GACCGA 1 cut(s) 81
TasI AATT 3 cut(s) 390, 794, 890
TfiI GAWTC 5 cut(s) 25, 271, 326, 442, 539
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TscAI CASTG 3 cut(s) 60, 391, 504
TspDTI ATGAA 4 cut(s) 331, 339, 527, 864
TspRI CASTG 3 cut(s) 60, 391, 504
Van91I CCANNNNNTGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 890
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 842
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.