Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

38173864 .. 38174742

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATAAGGCACCTTTTCAGCCTTCCGGTTCAGATCAAGCAGAAGAATATGAATCCAAAGCCTTACCATGGTTACTTTGGGCAATATGCAAGTATTCCCTTGTTTGAGAGCTTTGGACTTGAAGATGCCTCCAACTATGACTCCCTGAGAAACTTCACAGAACTAATGTGGCCAAATGACTATAGAATTCATATGATAAAGCAGTTGGATGAGCTTAAGGATATGATTGAACTGATGATTCTTGATAGTTATGGTTTAGCAGAGAAATTGAATTCAATCATGGTATGTAAAACACTGCTTCAAATAATGAAATACAGCTCACCTCCATCTGGGGAGTACATGCAGGGGATCCATGCTCACAATGACAAAGTATTAAGCACAATCATTTGTGATGATCAAGTTTCAGGACTTGAATTTCAAACCAAGGATGGACAATGGATCAAGTTTTCTCTATCACCTAACTCCTTTGTATTTATTGTTGGAGATCCTCTTCTGGCATGGAGCAATGGGAGAATGCATCCAGTGAATCATCGAGTGAAGATGTGTGGAGAAAACGAAAGATATTCTTTAGGAATTAGGAGCATTTGCAGTTCCAGTAGAAGGTACCATCATCAAGGCACCAAAAGAGTTGGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

212

Amino Acids

24.53

Weight (kDa)

8.61

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	100 - 191	3.4e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	3 cut(s)	9, 603, 617
AclWI	GGATC	4 cut(s)	343, 356, 446, 479
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	3 cut(s)	186, 271, 413
AfaI	GTAC	2 cut(s)	338, 605
AfiI	CCNNNNNNNGG	3 cut(s)	68, 329, 600
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	7 cut(s)	122, 230, 271, 276, 302, 413, 419
AluBI	AGCT	3 cut(s)	111, 214, 318
AluI	AGCT	3 cut(s)	111, 214, 318
AlwI	GGATC	4 cut(s)	343, 356, 446, 479
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	3 cut(s)	186, 271, 413
Asp718I	GGTACC	1 cut(s)	603
AsuHPI	GGTGA	2 cut(s)	312, 447
BalI	TGGCCA	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	348
BanI	GGYRCC	3 cut(s)	9, 603, 617
BccI	CCATC	3 cut(s)	334, 422, 615
BclI	TGATCA	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	215
BmiI	GGNNCC	4 cut(s)	11, 350, 605, 619
BmsI	GCATC	2 cut(s)	115, 526
BsaJI	CCNNGG	2 cut(s)	67, 423
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 329, 600
Bse1I	ACTGG	2 cut(s)	521, 594
Bse3DI	GCAATG	1 cut(s)	511
BseDI	CCNNGG	2 cut(s)	67, 423
BseGI	GGATG	3 cut(s)	214, 433, 517
BseLI	CCNNNNNNNGG	3 cut(s)	68, 329, 600
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	2 cut(s)	521, 594
BshFI	GGCC	1 cut(s)	172
BshNI	GGYRCC	3 cut(s)	9, 603, 617
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	68, 329, 600
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	172
Bsp143I	GATC	5 cut(s)	33, 348, 394, 438, 484
Bsp19I	CCATGG	1 cut(s)	67
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	4 cut(s)	11, 350, 605, 619
BspPI	GGATC	4 cut(s)	343, 356, 446, 479
BspT107I	GGYRCC	3 cut(s)	9, 603, 617
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	521, 594
BssECI	CCNNGG	2 cut(s)	67, 423
BssMI	GATC	5 cut(s)	33, 348, 394, 438, 484
BssT1I	CCWWGG	2 cut(s)	67, 423
Bst6I	CTCTTC	1 cut(s)	495
BstAFI	CTTAAG	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	214, 433, 517
BstKTI	GATC	5 cut(s)	36, 351, 397, 441, 487
BstMBI	GATC	5 cut(s)	33, 348, 394, 438, 484
BstNSI	RCATGY	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	181
BstX2I	RGATCY	2 cut(s)	348, 484
BstYI	RGATCY	2 cut(s)	348, 484
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	214, 433, 517
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	2 cut(s)	293, 528
Csp6I	GTAC	2 cut(s)	337, 604
CviAII	CATG	5 cut(s)	68, 280, 340, 353, 498
CviJI	RGCY	6 cut(s)	21, 61, 111, 172, 214, 318
CviKI_1	RGCY	6 cut(s)	21, 61, 111, 172, 214, 318
CviQI	GTAC	2 cut(s)	337, 604
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	5 cut(s)	35, 350, 396, 440, 486
DpnII	GATC	5 cut(s)	33, 348, 394, 438, 484
EaeI	YGGCCR	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco130I	CCWWGG	2 cut(s)	67, 423
EcoRI	GAATTC	2 cut(s)	186, 271
EcoT14I	CCWWGG	2 cut(s)	67, 423
EcoT22I	ATGCAT	1 cut(s)	519
ErhI	CCWWGG	2 cut(s)	67, 423
FaeI	CATG	5 cut(s)	71, 283, 343, 356, 501
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FatI	CATG	5 cut(s)	67, 279, 339, 352, 497
FauNDI	CATATG	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	394
FokI	GGATG	3 cut(s)	221, 440, 504
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	5 cut(s)	71, 283, 343, 356, 501
HinfI	GANTC	4 cut(s)	52, 140, 238, 526
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	312, 447
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	242, 405
HpyAV	CCTTC	2 cut(s)	32, 594
HpyCH4V	TGCA	4 cut(s)	89, 343, 517, 588
HpyF3I	CTNAG	1 cut(s)	146
Hsp92II	CATG	5 cut(s)	71, 283, 343, 356, 501
KpnI	GGTACC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	5 cut(s)	33, 348, 394, 438, 484
LmnI	GCTCC	2 cut(s)	501, 579
LpnPI	CCDG	8 cut(s)	39, 158, 315, 329, 390, 479, 534, 607
LweI	GCATC	2 cut(s)	115, 526
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	5 cut(s)	35, 350, 396, 440, 486
MboI	GATC	5 cut(s)	33, 348, 394, 438, 484
MboII	GAAGA	4 cut(s)	55, 134, 482, 550
MflI	RGATCY	2 cut(s)	348, 484
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	5 cut(s)	186, 266, 271, 413, 573
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	3 cut(s)	156, 186, 460
MnlI	CCTC	3 cut(s)	139, 333, 498
Mox20I	TGGCCA	1 cut(s)	172
Mph1103I	ATGCAT	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	2 cut(s)	216, 374
Msp20I	TGGCCA	1 cut(s)	172
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	519
NcoI	CCATGG	1 cut(s)	67
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	5 cut(s)	33, 348, 394, 438, 484
NlaIII	CATG	5 cut(s)	71, 283, 343, 356, 501
NlaIV	GGNNCC	4 cut(s)	11, 350, 605, 619
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	1 cut(s)	343
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	52, 238, 526
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspN4I	GGNNCC	4 cut(s)	11, 350, 605, 619
PsuI	RGATCY	2 cut(s)	348, 484
RsaI	GTAC	2 cut(s)	338, 605
RsaNI	GTAC	2 cut(s)	337, 604
SaqAI	TTAA	2 cut(s)	216, 374
Sau3AI	GATC	5 cut(s)	33, 348, 394, 438, 484
SchI	GAGTC	1 cut(s)	134
SetI	ASST	7 cut(s)	15, 113, 216, 320, 325, 460, 605
SfaNI	GCATC	2 cut(s)	115, 526
SfcI	CTRYAG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	186, 266, 271, 413, 573
StyI	CCWWGG	2 cut(s)	67, 423
TaqI	TCGA	1 cut(s)	532
TasI	AATT	5 cut(s)	186, 266, 271, 413, 573
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	52, 238, 526
Tru1I	TTAA	2 cut(s)	216, 374
Tru9I	TTAA	2 cut(s)	216, 374
TscAI	CASTG	2 cut(s)	300, 528
TspDTI	ATGAA	3 cut(s)	65, 179, 323
TspRI	CASTG	2 cut(s)	300, 528
Vha464I	CTTAAG	1 cut(s)	215
XapI	RAATTY	3 cut(s)	186, 271, 413
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.