Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003514.1

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

109377 .. 110154

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003514.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgaagcagctggatgagctgaaagatatgattcacttgatgattcttgatagctatggtttggaaaaatcatcaaatttgatcatggtgtctaaggcggtgctacggttacataagtacacgacacgtccttcaggggagtacgcgatggctgcctcggctcacactgacaagacttttagcacaatccttttcgatgatcaagtttcaggtcttgaagttcaaaccaaggacgaacaatgggtcaagttgcctatatctccttgctctttcatctttgttgttggagacttcctcatggcatggagcagtggtagaatgcattctgtgaagcatcgggtgatgatgtgtggggaaaaagaacgacattccttaatatcatctgcacttccaatagagggttccatcatcaaagcacaaaaggagctagtagatgaagagtacccacaaattcttaaagatttcgactatacagaatttttcaacttcatctgttcatcagaaggaagagccattgactcacaaatgcaagtttatgcatttgctggaattggaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

186

Amino Acids

21.08

Weight (kDa)

5.49

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	98
AcsI	RAATTY	3 cut(s)	76, 450, 476
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	3 cut(s)	119, 143, 443
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	218, 224, 484
AjiI	CACGTC	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	385, 417
AluBI	AGCT	4 cut(s)	10, 19, 54, 427
AluI	AGCT	4 cut(s)	10, 19, 54, 427
Alw26I	GTCTC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	7, 152
ApoI	RAATTY	3 cut(s)	76, 450, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
Asp700I	GAANNNNTTC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	19, 139
BccI	CCATC	2 cut(s)	142, 413
BclI	TGATCA	2 cut(s)	81, 199
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	428
BisI	GCNGC	2 cut(s)	8, 153
BlsI	GCNGC	2 cut(s)	9, 154
BmgBI	CACGTC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	403
BmsI	GCATC	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BsaJI	CCNNGG	2 cut(s)	156, 228
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	156, 228
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseXI	GCAGC	2 cut(s)	19, 139
BsgI	GTGCAG	1 cut(s)	369
Bsh1236I	CGCG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	282
BsmI	GAATGC	2 cut(s)	322, 324
Bsp143I	GATC	2 cut(s)	81, 199
BspACI	CCGC	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	156, 228
BssMI	GATC	2 cut(s)	81, 199
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	2 cut(s)	432, 502
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	2 cut(s)	84, 202
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	2 cut(s)	81, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 152, 158
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	2 cut(s)	19, 139
BtgZI	GCGATG	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	165, 316
Csp6I	GTAC	3 cut(s)	118, 142, 442
CviAII	CATG	3 cut(s)	85, 298, 303
CviJI	RGCY	7 cut(s)	10, 19, 54, 152, 161, 427, 512
CviKI_1	RGCY	7 cut(s)	10, 19, 54, 152, 161, 427, 512
CviQI	GTAC	3 cut(s)	118, 142, 442
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	83, 201
DpnII	GATC	2 cut(s)	81, 199
Eam1104I	CTCTTC	2 cut(s)	432, 502
EarI	CTCTTC	2 cut(s)	432, 502
Eco130I	CCWWGG	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	2 cut(s)	324, 541
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	88, 301, 306
FaiI	YATR	9 cut(s)	29, 57, 86, 114, 257, 299, 304, 471, 537
FatI	CATG	3 cut(s)	84, 297, 302
FbaI	TGATCA	2 cut(s)	81, 199
Fnu4HI	GCNGC	2 cut(s)	8, 153
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	8, 153
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	2 cut(s)	8, 153
Hin1II	CATG	3 cut(s)	88, 301, 306
HinfI	GANTC	3 cut(s)	31, 43, 518
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	2 cut(s)	47, 215
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	141, 497
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	322, 386, 529, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 152, 158
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	3 cut(s)	88, 301, 306
Ksp22I	TGATCA	2 cut(s)	81, 199
Kzo9I	GATC	2 cut(s)	81, 199
LguI	GCTCTTC	1 cut(s)	502
LmnI	GCTCC	2 cut(s)	306, 424
LpnPI	CCDG	3 cut(s)	120, 195, 531
Lsp1109I	GCAGC	2 cut(s)	19, 139
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	2 cut(s)	83, 201
MboI	GATC	2 cut(s)	81, 199
MboII	GAAGA	2 cut(s)	449, 519
MluCI	AATT	4 cut(s)	76, 450, 476, 549
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	166, 305, 391
Mph1103I	ATGCAT	2 cut(s)	324, 541
MroXI	GAANNNNTTC	1 cut(s)	322
MseI	TTAA	2 cut(s)	374, 456
MspA1I	CMGCKG	1 cut(s)	10
Mva1269I	GAATGC	2 cut(s)	322, 324
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	3 cut(s)	16, 152, 158
NdeII	GATC	2 cut(s)	81, 199
NlaIII	CATG	3 cut(s)	88, 301, 306
NlaIV	GGNNCC	1 cut(s)	403
NmeAIII	GCCGAG	1 cut(s)	137
NsiI	ATGCAT	2 cut(s)	324, 541
PciSI	GCTCTTC	1 cut(s)	502
PctI	GAATGC	2 cut(s)	322, 324
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	31, 43
PkrI	GCNGC	2 cut(s)	9, 154
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	3 cut(s)	119, 143, 443
RsaNI	GTAC	3 cut(s)	118, 142, 442
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	374, 456
SatI	GCNGC	2 cut(s)	8, 153
Sau3AI	GATC	2 cut(s)	81, 199
SchI	GAGTC	1 cut(s)	512
SetI	ASST	6 cut(s)	12, 21, 56, 130, 214, 429
SfaNI	GCATC	1 cut(s)	343
Sse9I	AATT	4 cut(s)	76, 450, 476, 549
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	195, 465
TasI	AATT	4 cut(s)	76, 450, 476, 549
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	31, 43
Tru1I	TTAA	2 cut(s)	374, 456
Tru9I	TTAA	2 cut(s)	374, 456
TscAI	CASTG	2 cut(s)	172, 316
TseI	GCWGC	2 cut(s)	7, 152
TspDTI	ATGAA	5 cut(s)	17, 262, 450, 478, 486
TspRI	CASTG	2 cut(s)	172, 316
XapI	RAATTY	3 cut(s)	76, 450, 476
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	1 cut(s)	428
Zsp2I	ATGCAT	2 cut(s)	324, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.