Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

33711115 .. 33711680

Gene Structure 566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029146

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAATACAGCTCACCTCCATCTGGGGAGTACATGCAGGGGCTTCATGCTCACACTGACAAATTATTAAGCACAATCATTTGTGATGATCAAGTTTCAGGACTTGAATTTCAAACCAAGGATGGACAATGGATCAAGTTTTCTCTATCTCCTGACTCCTTTGTACTTATTGTTGGAGATCCTCTTATGGCAAGGAGCAATGGTAGAATGCATCCGGTGAATCATCGAGTCATGATGTGTGGAGAAAACGAAAGATATTCTCTAGGAGCATTTGCAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTAGTAGATGAAGAACATCCACAAATCTTTAAAAACTTTGACTATATGGATTTTAGTATGTTTGGCCTTTCATTCGAAGCAATGGCCATGGACTCAGCAATGCAAATTTCGGCTTTTGTAGGAATCAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

150

Amino Acids

16.61

Weight (kDa)

4.93

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	10 - 91	4.6e-15	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	2 cut(s)	290, 304
AclWI	GGATC	2 cut(s)	140, 173
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	107, 420
AfaI	GTAC	3 cut(s)	32, 165, 292
AfiI	CCNNNNNNNGG	2 cut(s)	23, 287
AgsI	TTSAA	2 cut(s)	107, 113
AluBI	AGCT	2 cut(s)	12, 447
AluI	AGCT	2 cut(s)	12, 447
AlwI	GGATC	2 cut(s)	140, 173
AlwNI	CAGNNNCTG	1 cut(s)	447
AoxI	GGCC	2 cut(s)	379, 399
ApoI	RAATTY	2 cut(s)	107, 420
Asp718I	GGTACC	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	6, 229
AsuII	TTCGAA	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	2 cut(s)	290, 304
BccI	CCATC	3 cut(s)	28, 116, 302
BclI	TGATCA	1 cut(s)	88
BfaI	CTAG	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	292, 306
BmsI	GCATC	1 cut(s)	220
Bpu14I	TTCGAA	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	117, 402
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 287
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	3 cut(s)	205, 402, 420
BseDI	CCNNGG	2 cut(s)	117, 402
BseGI	GGATG	3 cut(s)	127, 211, 331
BseLI	CCNNNNNNNGG	2 cut(s)	23, 287
BseMI	GCAATG	3 cut(s)	205, 402, 420
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	281
BshFI	GGCC	2 cut(s)	381, 401
BshNI	GGYRCC	2 cut(s)	290, 304
BsiSI	CCGG	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	23, 287
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	381, 401
Bsp119I	TTCGAA	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	88, 132, 178
Bsp19I	CCATGG	1 cut(s)	402
BspANI	GGCC	2 cut(s)	381, 401
BspCNI	CTCAG	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	292, 306
BspPI	GGATC	2 cut(s)	140, 173
BspT104I	TTCGAA	1 cut(s)	390
BspT107I	GGYRCC	2 cut(s)	290, 304
BsrDI	GCAATG	3 cut(s)	205, 402, 420
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	117, 402
BssMI	GATC	3 cut(s)	88, 132, 178
BssT1I	CCWWGG	2 cut(s)	117, 402
BstBI	TTCGAA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	409
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	3 cut(s)	127, 211, 331
BstKTI	GATC	3 cut(s)	91, 135, 181
BstMBI	GATC	3 cut(s)	88, 132, 178
BstNSI	RCATGY	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	381, 401
BtgI	CCRYGG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	127, 211, 331
BtsIMutI	CAGTG	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	231
Csp6I	GTAC	3 cut(s)	31, 164, 291
CviAII	CATG	4 cut(s)	34, 47, 232, 403
CviJI	RGCY	6 cut(s)	12, 43, 381, 401, 428, 447
CviKI_1	RGCY	6 cut(s)	12, 43, 381, 401, 428, 447
CviQI	GTAC	3 cut(s)	31, 164, 291
DdeI	CTNAG	1 cut(s)	409
DpnI	GATC	3 cut(s)	90, 134, 180
DpnII	GATC	3 cut(s)	88, 132, 178
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	117, 402
EcoT14I	CCWWGG	2 cut(s)	117, 402
EcoT22I	ATGCAT	1 cut(s)	213
ErhI	CCWWGG	2 cut(s)	117, 402
FaeI	CATG	4 cut(s)	37, 50, 235, 406
FaiI	YATR	8 cut(s)	35, 48, 188, 233, 360, 362, 374, 404
FatI	CATG	4 cut(s)	33, 46, 231, 402
FbaI	TGATCA	1 cut(s)	88
FokI	GGATG	3 cut(s)	134, 198, 318
FspBI	CTAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	381, 401
HapII	CCGG	1 cut(s)	215
Hin1II	CATG	4 cut(s)	37, 50, 235, 406
HinfI	GANTC	5 cut(s)	155, 220, 228, 407, 438
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	2 cut(s)	6, 229
Hpy188III	TCNNGA	3 cut(s)	99, 152, 232
HpyCH4V	TGCA	4 cut(s)	37, 211, 275, 418
HpyF3I	CTNAG	1 cut(s)	409
Hsp92II	CATG	4 cut(s)	37, 50, 235, 406
KpnI	GGTACC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	88, 132, 178
LmnI	GCTCC	2 cut(s)	195, 266
LpnPI	CCDG	6 cut(s)	9, 23, 84, 165, 228, 294
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	263
MalI	GATC	3 cut(s)	90, 134, 180
MboI	GATC	3 cut(s)	88, 132, 178
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	62, 107, 420
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	3 cut(s)	149, 237, 401
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	27, 192, 280
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	2 cut(s)	68, 345
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	402
NdeII	GATC	3 cut(s)	88, 132, 178
NlaIII	CATG	4 cut(s)	37, 50, 235, 406
NlaIV	GGNNCC	2 cut(s)	292, 306
NsiI	ATGCAT	1 cut(s)	213
NspI	RCATGY	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	390
PagI	TCATGA	1 cut(s)	231
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	220, 438
PleI	GAGTC	3 cut(s)	149, 236, 401
PpsI	GAGTC	3 cut(s)	149, 236, 401
PspN4I	GGNNCC	2 cut(s)	292, 306
PstNI	CAGNNNCTG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	32, 165, 292
RsaNI	GTAC	3 cut(s)	31, 164, 291
SaqAI	TTAA	2 cut(s)	68, 345
Sau3AI	GATC	3 cut(s)	88, 132, 178
SchI	GAGTC	3 cut(s)	149, 237, 401
SetI	ASST	3 cut(s)	14, 19, 449
SfaNI	GCATC	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	390
Sse9I	AATT	3 cut(s)	62, 107, 420
SspMI	CTAG	1 cut(s)	263
StyI	CCWWGG	2 cut(s)	117, 402
TaqI	TCGA	2 cut(s)	226, 390
TasI	AATT	3 cut(s)	62, 107, 420
TatI	WGTACW	2 cut(s)	30, 163
TfiI	GAWTC	2 cut(s)	220, 438
Tru1I	TTAA	2 cut(s)	68, 345
Tru9I	TTAA	2 cut(s)	68, 345
TscAI	CASTG	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	17, 35, 339, 375
TspRI	CASTG	1 cut(s)	61
XapI	RAATTY	2 cut(s)	107, 420
XceI	RCATGY	1 cut(s)	37
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.