Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

23247877 .. 23249842

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTTCAGACTCTCATTACGAGATTCCAGCCATAGAATTCTCAACCTGTTCAGCTAAACTGGACCGCGGAACTGAAAAGTGGTTCAGTTTGTGCAAGAGGGTAAGAGAGGCTTGTGAAAACTATGGTTTTTTTGAAGTAGTATATGATAAAATACCTGTAGAGTTTAGAGCAGAGGTCTTCTCTGTGACGAGGGAATTTTACAGCCTTCCACTTGAGACAAAGAAAAAGAATGTCAATCCAAAGTCTTTCCATGGTTACTATGGACAGTTCCCCCAGGCTCCTTTGTACGAGAGCTTTGCCATTGAAGATGCCTCCAACTATGAATCCCTTACAAGCTTCACACACCAAATGTGGTCTGATGGTCATGACCAGTTTAGCAACACTATGAGTGGCATGGTGAACAAGCTGGATGAGCTGAAGGAAATGATTGACTTGATGATTCGTGATAGCTATGGTTTGGGAGAGAATCCAGATTCGATCATGCCAAGCAAGACGAAGATACGAGTACAGAAATACAGTGCACCTCCATCAGGGGAGTATATGAATGGGCTCAATGCTCACACTGACAAACAATGGACTGCAATCCTTTGTGATAATCAAGTTTCAGGGCTTGAATTTGAAACTAAAGACAGATCACAATGGCTCAAGTTGTATCTGCCTCCTACTTCCTTTGTCTTTATTGTTGGAGATTCTCTTATGGCATGGAGTAATGGAAGGATGCATTCTGTAAAGCATCGAGTCATGATGTGTGGAGAAAAAGAACGATATTCGTTTGGAGTATTTGGAATTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTAGTAGATGAAGAACATCCACAACTCTTTAAAGACTTTGAGTATATGGATTTTACCAAGTTTAGCACTTCGAAGGAAACAATGGCTTCAATGGAGTCAGCTGTGCATATTTGGGCTTTTGCAGGAATCAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

322

Amino Acids

36.82

Weight (kDa)

5.37

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 91	4.5e-16	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	169 - 262	4.3e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	803
AccB1I	GGYRCC	2 cut(s)	803, 817
AccII	CGCG	1 cut(s)	69
AciI	CCGC	2 cut(s)	67, 69
AcsI	RAATTY	4 cut(s)	38, 197, 617, 789
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	3 cut(s)	290, 510, 805
AfiI	CCNNNNNNNGG	2 cut(s)	533, 800
AgsI	TTSAA	5 cut(s)	137, 308, 617, 623, 918
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	8 cut(s)	56, 297, 339, 409, 418, 453, 929, 963
AluI	AGCT	8 cut(s)	56, 297, 339, 409, 418, 453, 929, 963
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	212
Alw44I	GTGCAC	1 cut(s)	522
AlwNI	CAGNNNCTG	1 cut(s)	963
ApaLI	GTGCAC	1 cut(s)	522
ApoI	RAATTY	4 cut(s)	38, 197, 617, 789
Asp718I	GGTACC	1 cut(s)	803
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	526
BanI	GGYRCC	2 cut(s)	803, 817
BanII	GRGCYC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	526
BccI	CCATC	3 cut(s)	356, 538, 815
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	3 cut(s)	282, 805, 819
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	3 cut(s)	301, 711, 745
BpiI	GAAGAC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
Bpu14I	TTCGAA	1 cut(s)	899
BpuEI	CTTGAG	2 cut(s)	236, 632
BsaJI	CCNNGG	3 cut(s)	67, 253, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 800
Bse1I	ACTGG	3 cut(s)	66, 373, 794
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	67, 253, 276
BseGI	GGATG	3 cut(s)	418, 726, 844
BseLI	CCNNNNNNNGG	2 cut(s)	533, 800
BseNI	ACTGG	3 cut(s)	66, 373, 794
BseSI	GKGCMC	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	69
BshNI	GGYRCC	2 cut(s)	803, 817
BsiHKAI	GWGCWC	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	533, 800
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	724
Bsp119I	TTCGAA	1 cut(s)	899
Bsp1286I	GDGCHC	2 cut(s)	526, 555
Bsp143I	GATC	2 cut(s)	480, 635
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	67, 69
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	2 cut(s)	367, 744
BspLI	GGNNCC	3 cut(s)	282, 805, 819
BspT104I	TTCGAA	1 cut(s)	899
BspT107I	GGYRCC	2 cut(s)	803, 817
BsrI	ACTGG	3 cut(s)	66, 373, 794
BssECI	CCNNGG	3 cut(s)	67, 253, 276
BssMI	GATC	2 cut(s)	480, 635
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	270, 521
BstBI	TTCGAA	1 cut(s)	899
BstDSI	CCRYGG	2 cut(s)	67, 253
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	3 cut(s)	418, 726, 844
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	483, 638
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	2 cut(s)	480, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	172
BtgI	CCRYGG	2 cut(s)	67, 253
BtsCI	GGATG	3 cut(s)	418, 726, 844
BtsIMutI	CAGTG	2 cut(s)	526, 564
CaiI	CAGNNNCTG	1 cut(s)	963
CciI	TCATGA	2 cut(s)	367, 744
Cfr13I	GGNCC	1 cut(s)	64
Cfr42I	CCGCGG	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	289, 509, 804
CviAII	CATG	6 cut(s)	254, 368, 397, 484, 705, 745
CviQI	GTAC	3 cut(s)	289, 509, 804
DpnI	GATC	2 cut(s)	482, 637
DpnII	GATC	2 cut(s)	480, 635
DraI	TTTAAA	1 cut(s)	859
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	555
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoRI	GAATTC	2 cut(s)	38, 789
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	726
EcoT38I	GRGCYC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	6 cut(s)	257, 371, 400, 487, 708, 748
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	6 cut(s)	253, 367, 396, 483, 704, 744
FokI	GGATG	3 cut(s)	425, 733, 831
FriOI	GRGCYC	1 cut(s)	555
Hin1II	CATG	6 cut(s)	257, 371, 400, 487, 708, 748
HindIII	AAGCTT	1 cut(s)	337
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	403, 524
Hpy188I	TCNGA	2 cut(s)	10, 361
Hpy188III	TCNNGA	4 cut(s)	368, 446, 473, 745
Hpy8I	GTNNAC	2 cut(s)	403, 524
HpyAV	CCTTC	4 cut(s)	218, 415, 711, 895
HpyCH4III	ACNGT	2 cut(s)	270, 521
HpyCH4V	TGCA	6 cut(s)	96, 524, 584, 724, 934, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
Hsp92II	CATG	6 cut(s)	257, 371, 400, 487, 708, 748
KpnI	GGTACC	1 cut(s)	807
KspI	CCGCGG	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	480, 635
LmnI	GCTCC	1 cut(s)	286
LweI	GCATC	3 cut(s)	301, 711, 745
MaeIII	GTNAC	2 cut(s)	187, 257
MalI	GATC	2 cut(s)	482, 637
MboI	GATC	2 cut(s)	480, 635
MboII	GAAGA	4 cut(s)	172, 320, 511, 851
MhlI	GDGCHC	2 cut(s)	526, 555
MluCI	AATT	4 cut(s)	38, 197, 617, 789
MlyI	GAGTC	3 cut(s)	5, 750, 932
MmeI	TCCRAC	2 cut(s)	342, 667
MnlI	CCTC	8 cut(s)	93, 103, 169, 186, 325, 537, 672, 793
Mph1103I	ATGCAT	1 cut(s)	726
MseI	TTAA	1 cut(s)	858
MspA1I	CMGCKG	2 cut(s)	69, 929
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	415
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	2 cut(s)	480, 635
NlaIII	CATG	6 cut(s)	257, 371, 400, 487, 708, 748
NlaIV	GGNNCC	3 cut(s)	282, 805, 819
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	726
NspV	TTCGAA	1 cut(s)	899
PagI	TCATGA	2 cut(s)	367, 744
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	7 cut(s)	25, 326, 442, 469, 476, 692, 954
PleI	GAGTC	3 cut(s)	5, 749, 931
PpsI	GAGTC	3 cut(s)	5, 749, 931
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	3 cut(s)	282, 805, 819
PspPI	GGNCC	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	963
PvuII	CAGCTG	1 cut(s)	929
RsaI	GTAC	3 cut(s)	290, 510, 805
RsaNI	GTAC	3 cut(s)	289, 509, 804
SacII	CCGCGG	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	858
Sau3AI	GATC	2 cut(s)	480, 635
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	3 cut(s)	5, 750, 932
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	526, 555
SfaNI	GCATC	3 cut(s)	301, 711, 745
SfcI	CTRYAG	1 cut(s)	159
Sfr303I	CCGCGG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	899
SgrBI	CCGCGG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	215, 647
SmoI	CTYRAG	2 cut(s)	215, 647
Sse9I	AATT	4 cut(s)	38, 197, 617, 789
SsiI	CCGC	2 cut(s)	67, 69
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	270, 521
TaqI	TCGA	3 cut(s)	479, 739, 899
TasI	AATT	4 cut(s)	38, 197, 617, 789
TatI	WGTACW	1 cut(s)	508
TfiI	GAWTC	7 cut(s)	25, 326, 442, 469, 476, 692, 954
Tru1I	TTAA	1 cut(s)	858
Tru9I	TTAA	1 cut(s)	858
TscAI	CASTG	2 cut(s)	526, 571
TseFI	GTSAC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	339, 560, 852
TspRI	CASTG	2 cut(s)	526, 571
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	4 cut(s)	38, 197, 617, 789
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.