Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002161.1

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

139969 .. 140619

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002161.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggtgaagaagatggatgagctgaaggaaatgatcgaaatgatgatcctttatagttatgggttgggagagaaactgaattcgatcattgcttgtaagacgttgctgcacgtgatgaaatacgatgcacctccatcgggacagtacgcaaatgggcactatgggctcactcctcacactgacaaactagtgagcacaatcctttgtgatgatcaagtttcaggacttgaatttgaaaccaaggatgggcaatgggtccagttgtctctatctcccacctcctacctctttattgttggagatcctcttatggcatggagtaatggaagaatgcatcgccttaagcacagggtgatgatttcaggagaaaaagagcgatattctttgggagcatttggaagtccattagaggctaccatcatcaaggcagcaaaggagctggtggatgatgaacatccccgaattctgaaagactttgactataaggacttcagtaagttcaccttcacacaggaaggaagcgcaatagactcggaaatgcaagttttcgcatttgctagaattagcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

190

Amino Acids

21.51

Weight (kDa)

5.68

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	40, 296
AcsI	RAATTY	3 cut(s)	79, 230, 462
AcuI	CTGAAG	2 cut(s)	44, 475
AcvI	CACGTG	1 cut(s)	112
AdeI	CACNNNGTG	1 cut(s)	352
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	137, 246
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	230, 236
AhlI	ACTAGT	1 cut(s)	187
AluBI	AGCT	2 cut(s)	22, 439
AluI	AGCT	2 cut(s)	22, 439
Alw21I	GWGCWC	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	40, 296
ApeKI	GCWGC	2 cut(s)	106, 428
ApoI	RAATTY	3 cut(s)	79, 230, 462
AspLEI	GCGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	3 cut(s)	16, 364, 493
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	159
BanII	GRGCYC	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	93, 440
BccI	CCATC	4 cut(s)	7, 142, 239, 425
BcgI	CGANNNNNNTGC	4 cut(s)	117, 151, 513, 547
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	270
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	2 cut(s)	188, 558
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	107, 429
BlsI	GCNGC	2 cut(s)	108, 430
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	257
BmsI	GCATC	2 cut(s)	115, 343
BsaAI	YACGTR	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 246
Bse1I	ACTGG	1 cut(s)	259
Bse3DI	GCAATG	2 cut(s)	87, 257
Bse8I	GATNNNNATC	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	4 cut(s)	22, 250, 451, 454
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	137, 246
BseMI	GCAATG	2 cut(s)	87, 257
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	93, 440
BsgI	GTGCAG	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	137, 246
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	336
Bsp1286I	GDGCHC	3 cut(s)	159, 168, 197
Bsp143I	GATC	5 cut(s)	33, 45, 84, 211, 301
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	2 cut(s)	40, 296
BspTI	CTTAAG	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	87, 257
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	5 cut(s)	33, 45, 84, 211, 301
BssT1I	CCWWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	112
BstF5I	GGATG	4 cut(s)	22, 250, 451, 454
BstHHI	GCGC	1 cut(s)	524
BstKTI	GATC	5 cut(s)	36, 48, 87, 214, 304
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	5 cut(s)	33, 45, 84, 211, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	93, 440
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	320
BtsCI	GGATG	4 cut(s)	22, 250, 451, 454
BtsIMutI	CAGTG	1 cut(s)	177
CfoI	GCGC	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	315
CviJI	RGCY	4 cut(s)	22, 166, 413, 439
CviKI_1	RGCY	4 cut(s)	22, 166, 413, 439
CviQI	GTAC	1 cut(s)	145
DpnI	GATC	5 cut(s)	35, 47, 86, 213, 303
DpnII	GATC	5 cut(s)	33, 45, 84, 211, 301
DraIII	CACNNNGTG	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	44, 475
Eco72I	CACGTG	1 cut(s)	112
EcoRI	GAATTC	2 cut(s)	79, 462
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	1 cut(s)	318
FaiI	YATR	6 cut(s)	54, 60, 162, 311, 316, 483
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	107, 429
FokI	GGATG	4 cut(s)	29, 257, 441, 458
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	107, 429
FspBI	CTAG	2 cut(s)	188, 558
GlaI	GCGC	1 cut(s)	523
GluI	GCNGC	2 cut(s)	107, 429
HhaI	GCGC	1 cut(s)	524
Hin1II	CATG	1 cut(s)	318
Hin6I	GCGC	1 cut(s)	522
HinP1I	GCGC	1 cut(s)	522
HinfI	GANTC	1 cut(s)	530
HphI	GGTGA	3 cut(s)	16, 364, 493
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	2 cut(s)	468, 535
Hpy188III	TCNNGA	3 cut(s)	138, 222, 363
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	3 cut(s)	19, 509, 514
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4IV	ACGT	2 cut(s)	101, 111
HpyCH4V	TGCA	4 cut(s)	109, 128, 334, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpySE526I	ACGT	2 cut(s)	101, 111
Hsp92II	CATG	1 cut(s)	318
HspAI	GCGC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	33, 45, 84, 211, 301
LmnI	GCTCC	2 cut(s)	389, 436
LpnPI	CCDG	6 cut(s)	207, 272, 334, 348, 425, 497
Lsp1109I	GCAGC	2 cut(s)	93, 440
LweI	GCATC	2 cut(s)	115, 343
MaeI	CTAG	2 cut(s)	188, 558
MaeII	ACGT	2 cut(s)	101, 111
MalI	GATC	5 cut(s)	35, 47, 86, 213, 303
MboI	GATC	5 cut(s)	33, 45, 84, 211, 301
MboII	GAAGA	3 cut(s)	19, 22, 339
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	3 cut(s)	159, 168, 197
MluCI	AATT	4 cut(s)	79, 230, 462, 561
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	6 cut(s)	141, 183, 289, 296, 315, 403
Mph1103I	ATGCAT	1 cut(s)	336
MseI	TTAA	1 cut(s)	342
MspCI	CTTAAG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	163
NdeII	GATC	5 cut(s)	33, 45, 84, 211, 301
NlaIII	CATG	1 cut(s)	318
NlaIV	GGNNCC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	336
PctI	GAATGC	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	108, 430
PleI	GAGTC	1 cut(s)	524
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	112
PspCI	CACGTG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	2 cut(s)	107, 429
Sau3AI	GATC	5 cut(s)	33, 45, 84, 211, 301
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	524
SduI	GDGCHC	3 cut(s)	159, 168, 197
SetI	ASST	8 cut(s)	24, 104, 114, 133, 281, 288, 441, 506
SfaNI	GCATC	2 cut(s)	115, 343
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	4 cut(s)	79, 230, 462, 561
SspMI	CTAG	2 cut(s)	188, 558
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	144
TaiI	ACGT	2 cut(s)	104, 114
TaqI	TCGA	2 cut(s)	36, 83
TasI	AATT	4 cut(s)	79, 230, 462, 561
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	2 cut(s)	106, 428
TspDTI	ATGAA	2 cut(s)	131, 465
TspRI	CASTG	1 cut(s)	184
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	79, 230, 462
XspI	CTAG	2 cut(s)	188, 558
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.