Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

42371735 .. 42373215

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00361670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTTCAGATTCTCATGACCAGATTCCGGCCATAGCATTCACAATCAACTCGCGGGAGGTGGACCGAGGAACTGATGAATGGTACCATCTGTGCAAGATGGTTCGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATAGTGTATGATAAGATACCTCCGCAGTTGAGAGCTGAAACCTTCTCTGCTCCCTTGTATGAGAGCTTTGGCCTAGAGGAAGCCTCCAACTATGAATCCCTTAGATGCTTGACAGAAGAAATATCGCCCAATGGTCATGACCAGTTTTGCACCGTCATTTCTATGATGAAGCAGCTGAATGAGCTAAAAGATATGATTAACTTGATGATTCTTGATAGTTATGGGTTGGGAGAGAAATCAAATTCGACTTTGCAGTCTAAGACACTGCTACGGATAATGAAATACCTGGCACCTCCTTCAAAGGACTACACTCAGGCTCTCCGGGCTCACACTGACAAGGGATTGGGCACAATTCTTTGTGATGATCAAGTTTCAGGTCTTGAAGTTGAAACCAAGGATGGACAATGGGTCAAATTGTCTCTTTCTCCTCGTTCCCTCGTCTTTCTTGTTGCAGATTCCCTCATGGCATGGAGCAATGGAAGAATGCATTCTGTGAAGCATCGAGTGATGATGCGTGGAGAAAAAGAACGATATTCTTTAGGAGCATTTGCAGTTCCATTGGAGGGTTCCATCATTAAGGCACAAAAGGAGCTAGTAGATGAAGAACATCCCCAAATTCTTAAAGATTTTGATTATACAGATTTTAGCAAGTTCTTCTCTTCAGAAAAAGGAAGGGCCATTGACCCAGAAAAGCAAGTTTTCGCATATGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

287

Amino Acids

32.51

Weight (kDa)

5.19

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	138 - 229	7.2e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	391
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 427
AccII	CGCG	1 cut(s)	55
AciI	CCGC	2 cut(s)	55, 161
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	2 cut(s)	379, 753
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	28, 701
AgsI	TTSAA	4 cut(s)	137, 438, 521, 527
AhdI	GACNNNNNGTC	1 cut(s)	545
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	5 cut(s)	173, 204, 313, 322, 730
AluI	AGCT	5 cut(s)	173, 204, 313, 322, 730
Alw26I	GTCTC	1 cut(s)	561
AoxI	GGCC	3 cut(s)	30, 208, 813
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	2 cut(s)	379, 753
Asp700I	GAANNNNTTC	1 cut(s)	625
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	64, 813
AsuC2I	CCSGG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	488
BanI	GGYRCC	2 cut(s)	84, 427
BanII	GRGCYC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	4 cut(s)	94, 96, 530, 716
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	2 cut(s)	212, 731
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	425, 461
Bme18I	GGWCC	1 cut(s)	64
BmeRI	GACNNNNNGTC	1 cut(s)	545
BmgT120I	GGNCC	2 cut(s)	64, 813
BmiI	GGNNCC	3 cut(s)	86, 429, 706
BmrFI	CCNGG	2 cut(s)	425, 461
BmsI	GCATC	3 cut(s)	233, 639, 646
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpuMI	CCSGG	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	67, 531
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 701
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	67, 531
BseGI	GGATG	2 cut(s)	541, 745
BseLI	CCNNNNNNNGG	2 cut(s)	28, 701
BseMI	GCAATG	1 cut(s)	619
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	32, 210, 815
BshNI	GGYRCC	2 cut(s)	84, 427
BsiSI	CCGG	2 cut(s)	29, 460
BslI	CCNNNNNNNGG	2 cut(s)	28, 701
BsmAI	GTCTC	1 cut(s)	561
BsmI	GAATGC	3 cut(s)	38, 625, 627
BsnI	GGCC	3 cut(s)	32, 210, 815
Bsp1286I	GDGCHC	2 cut(s)	466, 488
Bsp143I	GATC	1 cut(s)	502
BspACI	CCGC	2 cut(s)	55, 161
BspANI	GGCC	3 cut(s)	32, 210, 815
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	2 cut(s)	16, 274
BspLI	GGNNCC	3 cut(s)	86, 429, 706
BspT107I	GGYRCC	2 cut(s)	84, 427
BsrDI	GCAATG	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	2 cut(s)	67, 531
BssMI	GATC	1 cut(s)	502
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	802
BstDEI	CTNAG	3 cut(s)	239, 396, 450
BstF5I	GGATG	2 cut(s)	541, 745
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	1 cut(s)	505
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	1 cut(s)	502
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 461
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	423, 459
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	32, 210, 815
BtsCI	GGATG	2 cut(s)	541, 745
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	2 cut(s)	401, 468
CciI	TCATGA	2 cut(s)	16, 274
Cfr13I	GGNCC	2 cut(s)	64, 813
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	17, 275, 601, 606
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	239, 396, 450
DpnI	GATC	1 cut(s)	504
DpnII	GATC	1 cut(s)	502
DrdI	GACNNNNNNGTC	1 cut(s)	391
DriI	GACNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	802
Eam1105I	GACNNNNNGTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	802
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	466
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	4 cut(s)	20, 278, 604, 609
FatI	CATG	4 cut(s)	16, 274, 600, 605
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	548, 732
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	2 cut(s)	212, 731
GluI	GCNGC	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	32, 210, 815
HapII	CCGG	2 cut(s)	29, 460
Hin1II	CATG	4 cut(s)	20, 278, 604, 609
HinfI	GANTC	5 cut(s)	11, 25, 233, 346, 593
HpaII	CCGG	2 cut(s)	29, 460
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	10, 802
Hpy188III	TCNNGA	5 cut(s)	17, 107, 275, 350, 518
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	190, 444, 804
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	6 cut(s)	96, 288, 391, 590, 625, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 461
HpyF3I	CTNAG	3 cut(s)	239, 396, 450
Hsp92II	CATG	4 cut(s)	20, 278, 604, 609
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	502
LmnI	GCTCC	4 cut(s)	193, 609, 680, 727
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	3 cut(s)	233, 639, 646
MaeI	CTAG	2 cut(s)	212, 731
MalI	GATC	1 cut(s)	504
MboI	GATC	1 cut(s)	502
MboII	GAAGA	5 cut(s)	266, 630, 752, 784, 789
MhlI	GDGCHC	2 cut(s)	466, 488
MluCI	AATT	6 cut(s)	121, 379, 489, 551, 753, 852
MmeI	TCCRAC	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	627
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	3 cut(s)	336, 714, 759
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	29, 460
MspR9I	CCNGG	2 cut(s)	425, 461
Mva1269I	GAATGC	3 cut(s)	38, 625, 627
MvaI	CCWGG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	319, 461
NciI	CCSGG	1 cut(s)	461
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	1 cut(s)	502
NlaIII	CATG	4 cut(s)	20, 278, 604, 609
NlaIV	GGNNCC	3 cut(s)	86, 429, 706
NsiI	ATGCAT	1 cut(s)	627
PagI	TCATGA	2 cut(s)	16, 274
PctI	GAATGC	3 cut(s)	38, 625, 627
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	5 cut(s)	11, 25, 233, 346, 593
PkrI	GCNGC	1 cut(s)	312
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	86, 429, 706
PspPI	GGNCC	2 cut(s)	64, 813
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	336, 714, 759
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	1 cut(s)	502
Sau96I	GGNCC	2 cut(s)	64, 813
ScrFI	CCNGG	2 cut(s)	425, 461
SduI	GDGCHC	2 cut(s)	466, 488
SfaNI	GCATC	3 cut(s)	233, 639, 646
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	6 cut(s)	121, 379, 489, 551, 753, 852
SsiI	CCGC	2 cut(s)	55, 161
SspMI	CTAG	2 cut(s)	212, 731
StyD4I	CCNGG	2 cut(s)	423, 459
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	3 cut(s)	106, 383, 640
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	6 cut(s)	121, 379, 489, 551, 753, 852
TfiI	GAWTC	5 cut(s)	11, 25, 233, 346, 593
Tru1I	TTAA	3 cut(s)	336, 714, 759
Tru9I	TTAA	3 cut(s)	336, 714, 759
TscAI	CASTG	2 cut(s)	408, 475
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	93, 246, 320, 431, 753
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	2 cut(s)	408, 475
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	2 cut(s)	379, 753
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	2 cut(s)	212, 731
Zsp2I	ATGCAT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.