Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

23250489 .. 23253168

Gene Structure 2680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGTTCTGATTCTCATTACCAGATTCCGGCCATTGATTTCTCAATCATTTCTACGGAACTGGATCGAGGAACTCAAGGGTGGTACAATTTGTGCAAGAGGGTTAGAGAGGCTTGTGAAAATTATGGTTGCTTTGAGATAGTGTATGATAAGATACCTCTGGAGTTAAAGACAGAAACCTTCTCTATGTTAAGGCAACTTTTCAACCTTCCAGTGGAGACAAAGGAGAAGAATGTTGATCCAAAGCCTTTCCATGGTTACTATGGACGATATCCCGCAACTCCTTTCTACGAGAGCTTTGGCATTGAAGATTCCTCCAACTATGAGTCATTTAAAAGCTTCACTCGGTTGATGTGGCCAAATGGTCATGACCAGTTTTGCAACACTGTAGTTACTATGATGAAGAAGCTGGATGAGCTGAAGGAAATGATCGAGATGATGATCCTTGATAGTTATGGTTTGGGAGAGAAACTGAATTCCATCATTGCTTGTAAGACGTTGCTACGTGTGATGAAATACGATGCACCTCCGTCGGGAAAGTACGCAAATGGGCACTATGGGCTCACTCCTCACACTGACAAACTAGTGAGCACGATCCTTTGTGACGATCAAGTTTCAGGTCTTGAATTTGAAACCAAGGATGGAAAATGGATCAAGTTGTCTCTATCTCCCACCTCCTACCTCTTTATTGTTGGGGTTCCTCTTATGGCATGGAGTAATGGAAGAATGCTTCCCCTTGATAGTCGCATATTTCACAGGGTGATGATTTCTGGAGAAAAAGAACGGTATTCTTTGGGAGCATTTGGAAGTCCGCTAGAAGGTACCATCATCAAGGCAGCAAAGGAGCTAGTTGACGAAGAACATCCCCGAATTCTCAAAGACTTCGACTATAAGGACTTCAGTAAGTTCACCTTTACACAGGAAGGAAGCATCATAGACTCAGAAAAGCAAGTTTTCGCATTTGGTGGAGTAGCAGTACCTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

330

Amino Acids

37.55

Weight (kDa)

5.4

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 89	9.8e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	171 - 268	1.7e-13	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	821
AccB1I	GGYRCC	1 cut(s)	821
AciI	CCGC	2 cut(s)	276, 812
AclWI	GGATC	5 cut(s)	72, 233, 436, 589, 659
AcoI	YGGCCR	2 cut(s)	30, 356
AcsI	RAATTY	3 cut(s)	475, 626, 870
AcuI	CTGAAG	2 cut(s)	440, 883
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	4 cut(s)	86, 542, 823, 978
AfiI	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 533, 818
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	4 cut(s)	205, 308, 626, 632
AhlI	ACTAGT	1 cut(s)	583
AluBI	AGCT	5 cut(s)	297, 339, 409, 418, 847
AluI	AGCT	5 cut(s)	297, 339, 409, 418, 847
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	3 cut(s)	212, 666, 977
AlwI	GGATC	5 cut(s)	72, 233, 436, 589, 659
AlwNI	CAGNNNCTG	1 cut(s)	980
AoxI	GGCC	2 cut(s)	30, 356
ApeKI	GCWGC	1 cut(s)	836
ApoI	RAATTY	3 cut(s)	475, 626, 870
Asp718I	GGTACC	1 cut(s)	821
AsuHPI	GGTGA	2 cut(s)	772, 901
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	848
BccI	CCATC	3 cut(s)	488, 635, 833
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BcoDI	GTCTC	3 cut(s)	212, 666, 977
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	3 cut(s)	584, 815, 848
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	837
BlsI	GCNGC	1 cut(s)	838
BmiI	GGNNCC	2 cut(s)	699, 823
BmsI	GCATC	2 cut(s)	511, 939
BpmI	CTGGAG	2 cut(s)	182, 792
BpuEI	CTTGAG	1 cut(s)	60
BsaAI	YACGTR	1 cut(s)	506
BsaBI	GATNNNNATC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	253, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	960, 990
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 533, 818
Bse1I	ACTGG	3 cut(s)	66, 212, 373
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	253, 636
BseGI	GGATG	3 cut(s)	418, 646, 862
BseJI	GATNNNNATC	1 cut(s)	440
BseLI	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 533, 818
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	2 cut(s)	954, 972
BseNI	ACTGG	3 cut(s)	66, 212, 373
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	848
BshFI	GGCC	2 cut(s)	32, 358
BshNI	GGYRCC	1 cut(s)	821
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	5 cut(s)	28, 214, 254, 533, 818
BsmAI	GTCTC	3 cut(s)	212, 666, 977
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	32, 358
Bsp1286I	GDGCHC	3 cut(s)	555, 564, 593
Bsp143I	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	276, 812
BspANI	GGCC	2 cut(s)	32, 358
BspCNI	CTCAG	2 cut(s)	953, 973
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	699, 823
BspPI	GGATC	5 cut(s)	72, 233, 436, 589, 659
BspT107I	GGYRCC	1 cut(s)	821
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	3 cut(s)	66, 212, 373
BssECI	CCNNGG	2 cut(s)	253, 636
BssMI	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
BssT1I	CCWWGG	2 cut(s)	253, 636
Bst4CI	ACNGT	2 cut(s)	388, 786
BstBAI	YACGTR	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	940, 981
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	418, 646, 862
BstKTI	GATC	7 cut(s)	67, 241, 432, 444, 597, 610, 654
BstMAI	GTCTC	3 cut(s)	212, 666, 977
BstMBI	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	415, 559
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	32, 358
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	418, 646, 862
BtsIMutI	CAGTG	3 cut(s)	219, 384, 573
CaiI	CAGNNNCTG	1 cut(s)	980
CciI	TCATGA	1 cut(s)	367
Csp6I	GTAC	4 cut(s)	85, 541, 822, 977
CviAII	CATG	3 cut(s)	254, 368, 711
CviQI	GTAC	4 cut(s)	85, 541, 822, 977
DdeI	CTNAG	2 cut(s)	940, 981
DpnI	GATC	7 cut(s)	66, 240, 431, 443, 596, 609, 653
DpnII	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
DraI	TTTAAA	1 cut(s)	334
DraIII	CACNNNGTG	1 cut(s)	760
EaeI	YGGCCR	2 cut(s)	30, 356
Eco130I	CCWWGG	2 cut(s)	253, 636
Eco24I	GRGCYC	1 cut(s)	564
Eco32I	GATATC	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	440, 883
EcoRI	GAATTC	2 cut(s)	475, 870
EcoRV	GATATC	1 cut(s)	272
EcoT14I	CCWWGG	2 cut(s)	253, 636
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	253, 636
FaeI	CATG	3 cut(s)	257, 371, 714
FalI	AAGNNNNNCTT	2 cut(s)	896, 928
FatI	CATG	3 cut(s)	253, 367, 710
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	837
FokI	GGATG	3 cut(s)	425, 653, 849
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	837
FspBI	CTAG	3 cut(s)	584, 815, 848
GluI	GCNGC	1 cut(s)	837
GsuI	CTGGAG	2 cut(s)	182, 792
HaeIII	GGCC	2 cut(s)	32, 358
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	3 cut(s)	257, 371, 714
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	5 cut(s)	11, 25, 311, 326, 938
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	772, 901
Hpy166II	GTNNAC	2 cut(s)	853, 909
Hpy188I	TCNGA	2 cut(s)	10, 943
Hpy188III	TCNNGA	6 cut(s)	161, 368, 433, 534, 623, 771
Hpy8I	GTNNAC	2 cut(s)	853, 909
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	5 cut(s)	190, 218, 415, 812, 917
HpyCH4III	ACNGT	2 cut(s)	388, 786
HpyCH4IV	ACGT	2 cut(s)	497, 505
HpyCH4V	TGCA	3 cut(s)	96, 381, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	415, 559
HpyF3I	CTNAG	2 cut(s)	940, 981
HpySE526I	ACGT	2 cut(s)	497, 505
Hsp92II	CATG	3 cut(s)	257, 371, 714
KpnI	GGTACC	1 cut(s)	825
Kzo9I	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
LmnI	GCTCC	2 cut(s)	797, 844
Lsp1109I	GCAGC	1 cut(s)	848
LweI	GCATC	2 cut(s)	511, 939
MaeI	CTAG	3 cut(s)	584, 815, 848
MaeII	ACGT	2 cut(s)	497, 505
MaeIII	GTNAC	3 cut(s)	257, 391, 602
MalI	GATC	7 cut(s)	66, 240, 431, 443, 596, 609, 653
MboI	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
MboII	GAAGA	5 cut(s)	241, 320, 415, 735, 869
MhlI	GDGCHC	3 cut(s)	555, 564, 593
MlsI	TGGCCA	1 cut(s)	358
MluCI	AATT	5 cut(s)	88, 121, 475, 626, 870
MluNI	TGGCCA	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	335, 932
MmeI	TCCRAC	1 cut(s)	342
Mox20I	TGGCCA	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	358
MseI	TTAA	3 cut(s)	167, 191, 333
Msp20I	TGGCCA	1 cut(s)	358
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	732
MwoI	GCNNNNNNNGC	2 cut(s)	415, 559
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
NlaIII	CATG	3 cut(s)	257, 371, 714
NlaIV	GGNNCC	2 cut(s)	699, 823
NmuCI	GTSAC	1 cut(s)	602
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	11, 25, 311
PkrI	GCNGC	1 cut(s)	838
PleI	GAGTC	2 cut(s)	334, 932
PpsI	GAGTC	2 cut(s)	334, 932
Ppu21I	YACGTR	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	699, 823
PstNI	CAGNNNCTG	1 cut(s)	980
RsaI	GTAC	4 cut(s)	86, 542, 823, 978
RsaNI	GTAC	4 cut(s)	85, 541, 822, 977
SaqAI	TTAA	3 cut(s)	167, 191, 333
SatI	GCNGC	1 cut(s)	837
Sau3AI	GATC	7 cut(s)	64, 238, 429, 441, 594, 607, 651
SchI	GAGTC	2 cut(s)	335, 932
SduI	GDGCHC	3 cut(s)	555, 564, 593
SfaNI	GCATC	2 cut(s)	511, 939
SfcI	CTRYAG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	5 cut(s)	88, 121, 475, 626, 870
SsiI	CCGC	2 cut(s)	276, 812
SspMI	CTAG	3 cut(s)	584, 815, 848
StyI	CCWWGG	2 cut(s)	253, 636
TaaI	ACNGT	2 cut(s)	388, 786
TaiI	ACGT	2 cut(s)	500, 508
TaqI	TCGA	3 cut(s)	67, 432, 885
TasI	AATT	5 cut(s)	88, 121, 475, 626, 870
TfiI	GAWTC	3 cut(s)	11, 25, 311
Tru1I	TTAA	3 cut(s)	167, 191, 333
Tru9I	TTAA	3 cut(s)	167, 191, 333
TscAI	CASTG	3 cut(s)	219, 391, 580
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	1 cut(s)	836
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	2 cut(s)	416, 527
TspGWI	ACGGA	2 cut(s)	71, 519
TspRI	CASTG	3 cut(s)	219, 391, 580
XapI	RAATTY	3 cut(s)	475, 626, 870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	3 cut(s)	584, 815, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.