Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

39139665 .. 39142427

Gene Structure 2763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAGTCAGACTGTAGTTCATATGATAAAGCAGCTGGATGAGCTTAAGGATATGATTGAACTGATGATTCTTGGTAGTTATGGTTTAGGAGAGAAATTGAATTCAATCATGGTATGTAAAACACTGCTTCGAATAATGAAATACAGCTCACCTCCATCTGGGGAGTACATGCAGGGGCTCCATGCTCACACTGACAAAGTATTAAGCACAATCATTTGTGATGATCAAGTTTCAGGACTTGAATTTCAAACCAAGGATGGACAATGGATCAAATTTTCTCTATCTCCTAACTCCTTTGTATTTATTGTTGGAGATCCTCTTATGGCATGGAGCAATGGGAGAATGCATCCAGTGAATCATCGAGTGATGATGTGTGGAGAAAAAGAAAGATATTCTTTAGGAGCATTTGCAGTTCCAGTAGAGGGTACCATCATCAAGGCACCAAAGGAGTTGGTAGATGAAGAACATCCCCAAATTCTCAAGGACTTTGACTATATGGAATTTTCTGATTTCTCCTACCTACTCAGCCGAAGGAAGGCTCATAGACTCAGCAACACAAGTGTTTGTATTTTCTGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

193

Amino Acids

22.06

Weight (kDa)

6.15

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	46 - 136	3.9e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	2 cut(s)	425, 439
AclWI	GGATC	2 cut(s)	275, 308
AcsI	RAATTY	5 cut(s)	100, 242, 272, 474, 500
AfaI	GTAC	2 cut(s)	167, 427
AfiI	CCNNNNNNNGG	3 cut(s)	158, 422, 535
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	59, 100, 105, 242, 248
AluBI	AGCT	3 cut(s)	34, 43, 147
AluI	AGCT	3 cut(s)	34, 43, 147
AlwI	GGATC	2 cut(s)	275, 308
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	5 cut(s)	100, 242, 272, 474, 500
Asp718I	GGTACC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	425, 439
BanII	GRGCYC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	3 cut(s)	163, 251, 437
BclI	TGATCA	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	12
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
BmiI	GGNNCC	3 cut(s)	179, 427, 441
BmsI	GCATC	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 422, 535
Bse1I	ACTGG	2 cut(s)	350, 416
Bse3DI	GCAATG	1 cut(s)	340
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	4 cut(s)	43, 262, 346, 466
BseLI	CCNNNNNNNGG	3 cut(s)	158, 422, 535
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	2 cut(s)	538, 562
BseNI	ACTGG	2 cut(s)	350, 416
BseXI	GCAGC	1 cut(s)	43
BshNI	GGYRCC	2 cut(s)	425, 439
BslI	CCNNNNNNNGG	3 cut(s)	158, 422, 535
BsmI	GAATGC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	223, 267, 313
BspCNI	CTCAG	2 cut(s)	537, 561
BspLI	GGNNCC	3 cut(s)	179, 427, 441
BspPI	GGATC	2 cut(s)	275, 308
BspT104I	TTCGAA	1 cut(s)	130
BspT107I	GGYRCC	2 cut(s)	425, 439
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	350, 416
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	223, 267, 313
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	13
BstAFI	CTTAAG	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	130
BstDEI	CTNAG	2 cut(s)	524, 548
BstF5I	GGATG	4 cut(s)	43, 262, 346, 466
BstKTI	GATC	3 cut(s)	226, 270, 316
BstMBI	GATC	3 cut(s)	223, 267, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BtsCI	GGATG	4 cut(s)	43, 262, 346, 466
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	122, 189, 357
Csp6I	GTAC	2 cut(s)	166, 426
CviAII	CATG	4 cut(s)	109, 169, 182, 327
CviJI	RGCY	6 cut(s)	34, 43, 147, 178, 528, 539
CviKI_1	RGCY	6 cut(s)	34, 43, 147, 178, 528, 539
CviQI	GTAC	2 cut(s)	166, 426
DdeI	CTNAG	2 cut(s)	524, 548
DpnI	GATC	3 cut(s)	225, 269, 315
DpnII	GATC	3 cut(s)	223, 267, 313
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	4 cut(s)	112, 172, 185, 330
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FatI	CATG	4 cut(s)	108, 168, 181, 326
FauNDI	CATATG	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	4 cut(s)	50, 269, 333, 453
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	112, 172, 185, 330
HinfI	GANTC	4 cut(s)	4, 67, 355, 546
HphI	GGTGA	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	9, 508
Hpy188III	TCNNGA	2 cut(s)	234, 574
HpyAV	CCTTC	2 cut(s)	525, 529
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	172, 346, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	524, 548
Hsp92II	CATG	4 cut(s)	112, 172, 185, 330
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	223, 267, 313
LmnI	GCTCC	3 cut(s)	183, 330, 401
LpnPI	CCDG	7 cut(s)	20, 144, 158, 219, 363, 429, 559
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	355
MalI	GATC	3 cut(s)	225, 269, 315
MboI	GATC	3 cut(s)	223, 267, 313
MboII	GAAGA	1 cut(s)	473
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	7 cut(s)	95, 100, 242, 272, 474, 500, 577
MlyI	GAGTC	2 cut(s)	13, 540
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	162, 327, 415
Mph1103I	ATGCAT	1 cut(s)	348
MseI	TTAA	2 cut(s)	45, 203
MspA1I	CMGCKG	1 cut(s)	34
MspCI	CTTAAG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeI	CATATG	1 cut(s)	21
NdeII	GATC	3 cut(s)	223, 267, 313
NlaIII	CATG	4 cut(s)	112, 172, 185, 330
NlaIV	GGNNCC	3 cut(s)	179, 427, 441
NsiI	ATGCAT	1 cut(s)	348
NspI	RCATGY	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	130
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	67, 355
PkrI	GCNGC	1 cut(s)	33
PleI	GAGTC	2 cut(s)	12, 540
PpsI	GAGTC	2 cut(s)	12, 540
PspN4I	GGNNCC	3 cut(s)	179, 427, 441
PsuI	RGATCY	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	2 cut(s)	167, 427
RsaNI	GTAC	2 cut(s)	166, 426
SaqAI	TTAA	2 cut(s)	45, 203
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	3 cut(s)	223, 267, 313
SchI	GAGTC	2 cut(s)	13, 540
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	36, 45, 149, 154, 522
SfaNI	GCATC	1 cut(s)	355
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	44, 479
SmoI	CTYRAG	2 cut(s)	44, 479
Sse9I	AATT	7 cut(s)	95, 100, 242, 272, 474, 500, 577
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	130, 361
TasI	AATT	7 cut(s)	95, 100, 242, 272, 474, 500, 577
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	2 cut(s)	67, 355
Tru1I	TTAA	2 cut(s)	45, 203
Tru9I	TTAA	2 cut(s)	45, 203
TscAI	CASTG	3 cut(s)	129, 196, 357
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	3 cut(s)	8, 152, 474
TspRI	CASTG	3 cut(s)	129, 196, 357
Vha464I	CTTAAG	1 cut(s)	44
XapI	RAATTY	5 cut(s)	100, 242, 272, 474, 500
XceI	RCATGY	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.