Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Forward (+)

39199233 .. 39199982

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G470900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATTCTTGATAGTTATGGTTTGGGAGAGAAATCGAATTCAATAGTGCCATGTAAGACGCTGATACAGGTGATGAAGTACAGCGCACCTCCATCTGGAGAGTACATGAAAGGGCTCCAAGCTCACACGGACAAACAATTCAGCACAATACTTTGTGATGATCAAGTTTCTGGGCTTGAATTTGAAACCAAGGATGGACAATGGAACAAGTTATCTCTATCTCCTAGCTCCTTCATCTTCTTAGTTGGAGATCCTCTTATGGCATGGAGTAATGGCAGAATGCATCCCGTGAAGCCTCGAGCTTTTGCAGTTCCAGTTGAGGGTACCATCATCAAGGCACCAAAGGAGTTAGTTGATGAAGAATATCCTCAAATTCTCAAAGAATTTGAATACATGGATTTTACCAAGTTCTCCTATTCAGAGGAAGGAAGGGCCATAGACTCAGCAAGGCAAGTTTTTGTGTTTGCTGGAATTAGCACTAGAGAACAAGACAATGGCTCTGGCAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

171

Amino Acids

19.02

Weight (kDa)

5.1

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	2 cut(s)	323, 337
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	4 cut(s)	37, 179, 372, 383
AfaI	GTAC	3 cut(s)	80, 104, 325
AfiI	CCNNNNNNNGG	2 cut(s)	95, 320
AgsI	TTSAA	4 cut(s)	42, 179, 185, 389
AluBI	AGCT	3 cut(s)	122, 228, 302
AluI	AGCT	3 cut(s)	122, 228, 302
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	432
ApoI	RAATTY	4 cut(s)	37, 179, 372, 383
Asp718I	GGTACC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	297
BanI	GGYRCC	2 cut(s)	323, 337
BanII	GRGCYC	1 cut(s)	117
BccI	CCATC	3 cut(s)	100, 188, 335
BclI	TGATCA	1 cut(s)	160
BfaI	CTAG	2 cut(s)	225, 480
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	3 cut(s)	116, 325, 339
BmsI	GCATC	1 cut(s)	292
BpmI	CTGGAG	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 320
Bse1I	ACTGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	199, 283
BseLI	CCNNNNNNNGG	2 cut(s)	95, 320
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	434
BshNI	GGYRCC	2 cut(s)	323, 337
BsiHKCI	CYCGRG	1 cut(s)	297
BslI	CCNNNNNNNGG	2 cut(s)	95, 320
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	160, 250
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	455
BspLI	GGNNCC	3 cut(s)	116, 325, 339
BspPI	GGATC	1 cut(s)	245
BspT107I	GGYRCC	2 cut(s)	323, 337
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	160, 250
BssT1I	CCWWGG	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	241, 442
BstF5I	GGATG	2 cut(s)	199, 283
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	163, 253
BstMBI	GATC	2 cut(s)	160, 250
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	199, 283
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	432
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	3 cut(s)	79, 103, 324
CviAII	CATG	5 cut(s)	51, 106, 264, 394, 510
CviJI	RGCY	8 cut(s)	115, 122, 175, 228, 295, 302, 434, 498
CviKI_1	RGCY	8 cut(s)	115, 122, 175, 228, 295, 302, 434, 498
CviQI	GTAC	3 cut(s)	79, 103, 324
DdeI	CTNAG	2 cut(s)	241, 442
DpnI	GATC	2 cut(s)	162, 252
DpnII	GATC	2 cut(s)	160, 250
Eco130I	CCWWGG	1 cut(s)	189
Eco24I	GRGCYC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	5 cut(s)	54, 109, 267, 397, 513
FaiI	YATR	8 cut(s)	18, 52, 107, 260, 265, 395, 437, 511
FatI	CATG	5 cut(s)	50, 105, 263, 393, 509
FbaI	TGATCA	1 cut(s)	160
FokI	GGATG	2 cut(s)	206, 270
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	225, 480
GlaI	GCGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	434
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	54, 109, 267, 397, 513
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	4, 440
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	2 cut(s)	8, 96
HpyAV	CCTTC	3 cut(s)	241, 419, 423
HpyCH4V	TGCA	2 cut(s)	283, 308
HpyF3I	CTNAG	2 cut(s)	241, 442
Hsp92II	CATG	5 cut(s)	54, 109, 267, 397, 513
HspAI	GCGC	1 cut(s)	84
KpnI	GGTACC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	160, 250
LmnI	GCTCC	2 cut(s)	120, 233
LpnPI	CCDG	6 cut(s)	53, 81, 156, 327, 453, 486
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	225, 480
MalI	GATC	2 cut(s)	162, 252
MboI	GATC	2 cut(s)	160, 250
MboII	GAAGA	2 cut(s)	229, 371
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	6 cut(s)	37, 137, 179, 372, 383, 471
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	99, 264, 306, 313, 378, 415
Mph1103I	ATGCAT	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	285
NdeII	GATC	2 cut(s)	160, 250
NlaIII	CATG	5 cut(s)	54, 109, 267, 397, 513
NlaIV	GGNNCC	3 cut(s)	116, 325, 339
NsiI	ATGCAT	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	297
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	4
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	116, 325, 339
PspPI	GGNCC	1 cut(s)	432
PspXI	VCTCGAGB	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	3 cut(s)	80, 104, 325
RsaNI	GTAC	3 cut(s)	79, 103, 324
Sau3AI	GATC	2 cut(s)	160, 250
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	1 cut(s)	434
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	72, 91, 124, 230, 304
SfaNI	GCATC	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	297
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	6 cut(s)	37, 137, 179, 372, 383, 471
SspMI	CTAG	2 cut(s)	225, 480
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	2 cut(s)	35, 298
TasI	AATT	6 cut(s)	37, 137, 179, 372, 383, 471
TatI	WGTACW	2 cut(s)	78, 102
TfiI	GAWTC	1 cut(s)	4
TspDTI	ATGAA	4 cut(s)	89, 122, 223, 372
TspGWI	ACGGA	1 cut(s)	143
XapI	RAATTY	4 cut(s)	37, 179, 372, 383
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	2 cut(s)	225, 480
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.