Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

22546641 .. 22549366

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG134400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGTTCCGATTCTCATTACCAGATTCCGGCCATTGATTTCTCAATCAATTCCACGGAACTGGATCGCGGAACTGATAAGTGGTACAATTTGTGCAAGAGGGTTAGAGAGGCTTGTGAAAATTATGGTTGCTTTGAAATAGCGTATGATAAGATACCCCTGCAGTTAAAAGCAGATACCTTCTCTATGATAAGGCAACTTTTTAACCTTCCAGTGGAGACAAAAGAAAAGAATGTTAATCCAAAGCCTTTCCATGGTTATTATGGACAGTATCCCACTACTCCCTTCTATGAGAGCTTTGGCATTGAAGATTCCTCCAACTATGAGTCCTTTAAAAGCTTCACTGAGTTGATGTGGCCAGATGGTCATGAGCAGTTTTGTAACACTGTAGTTACCATGGTGAAGAAGATGGATGAGCTGAAGGAAATGATCGAAATGATGATCCTTGATAGTTATGGGTTGGGAGAGAAACTGAATTCGATTATTGCTTGTAAGACGTTGCTACGCGTGATGAAATACGATGCACCTCCATCGGGACAGTACGCAAATGGGCACTATGGGCTCACTCCTCACACTGACAAACTAGTGAGCACAATCCTTTGTGATGATCAAGTTTCAGGGCTTGAATTTGAAACCAAGGATGGGCAATGGGTCAAGTTGTCTTTATCTCCCACCTCCTACCTCTTTATTGTTGGAGATCCTCTTATGGCATGGAGTAATGGAAGAATGCATCGCCTTAAGCACAGGGTGATGATTTCAGGAGAAAAAGAGCGATATTCTTTGGGAGCATTTGGAAGTCCATTAGAGGGTACCATCATCAAGGCAGCAAAGGAGCTAGTGGATGATGAACATCCACGAATTCTCAAGGACTTTGACTATAAGGACTTCAGTAAGTTCACCTTCACACAGGAAGGAAGCGCCATAGACTCGGAAATGCAAGTTTTCGCATTTGCTGGAATTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

322

Amino Acids

36.77

Weight (kDa)

5.2

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	9 - 90	7.2e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 264	1.5e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	809
AccB1I	GGYRCC	1 cut(s)	809
AccII	CGCG	2 cut(s)	69, 507
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	3 cut(s)	72, 436, 692
AcoI	YGGCCR	2 cut(s)	30, 356
AcsI	RAATTY	3 cut(s)	475, 626, 858
AcuI	CTGAAG	2 cut(s)	440, 871
AdeI	CACNNNGTG	1 cut(s)	748
AfaI	GTAC	3 cut(s)	86, 542, 811
AfiI	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	4 cut(s)	137, 308, 626, 632
AhlI	ACTAGT	1 cut(s)	583
AluBI	AGCT	4 cut(s)	297, 339, 418, 835
AluI	AGCT	4 cut(s)	297, 339, 418, 835
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	72, 436, 692
AoxI	GGCC	2 cut(s)	30, 356
ApeKI	GCWGC	1 cut(s)	824
ApoI	RAATTY	3 cut(s)	475, 626, 858
Asp718I	GGTACC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	920
AsuHPI	GGTGA	3 cut(s)	412, 760, 889
BaeGI	GKGCMC	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	836
BccI	CCATC	5 cut(s)	356, 403, 538, 635, 821
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BciVI	GTATCC	1 cut(s)	282
BclI	TGATCA	1 cut(s)	607
BcoDI	GTCTC	1 cut(s)	212
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	584, 836
BfmI	CTRYAG	2 cut(s)	161, 387
BfoI	RGCGCY	1 cut(s)	921
BfrI	CTTAAG	1 cut(s)	737
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	825
BlsI	GCNGC	1 cut(s)	826
BmiI	GGNNCC	2 cut(s)	7, 811
BmsI	GCATC	2 cut(s)	511, 739
BpuEI	CTTGAG	1 cut(s)	848
BsaBI	GATNNNNATC	1 cut(s)	849
BsaJI	CCNNGG	4 cut(s)	54, 253, 396, 636
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
Bse1I	ACTGG	2 cut(s)	66, 212
Bse3DI	GCAATG	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	849
BseDI	CCNNGG	4 cut(s)	54, 253, 396, 636
BseGI	GGATG	4 cut(s)	418, 646, 847, 850
BseJI	GATNNNNATC	1 cut(s)	849
BseLI	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	2 cut(s)	66, 212
BseRI	GAGGAG	1 cut(s)	558
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	836
Bsh1236I	CGCG	2 cut(s)	69, 507
BshFI	GGCC	2 cut(s)	32, 358
BshNI	GGYRCC	1 cut(s)	809
BsiHKAI	GWGCWC	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	6 cut(s)	28, 214, 254, 533, 642, 806
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	32, 358
Bsp1286I	GDGCHC	3 cut(s)	555, 564, 593
Bsp143I	GATC	5 cut(s)	64, 429, 441, 607, 697
Bsp19I	CCATGG	2 cut(s)	253, 396
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	32, 358
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	2 cut(s)	69, 507
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	7, 811
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	72, 436, 692
BspT107I	GGYRCC	1 cut(s)	809
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	66, 212
BssECI	CCNNGG	4 cut(s)	54, 253, 396, 636
BssMI	GATC	5 cut(s)	64, 429, 441, 607, 697
BssT1I	CCWWGG	3 cut(s)	253, 396, 636
Bst4CI	ACNGT	3 cut(s)	270, 388, 540
BstAFI	CTTAAG	1 cut(s)	737
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	3 cut(s)	54, 253, 396
BstF5I	GGATG	4 cut(s)	418, 646, 847, 850
BstFNI	CGCG	2 cut(s)	69, 507
BstH2I	RGCGCY	1 cut(s)	921
BstHHI	GCGC	1 cut(s)	920
BstKTI	GATC	5 cut(s)	67, 432, 444, 610, 700
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	5 cut(s)	64, 429, 441, 607, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	161, 387
BstSLI	GKGCMC	1 cut(s)	555
BstUI	CGCG	2 cut(s)	69, 507
BstV1I	GCAGC	1 cut(s)	836
BstX2I	RGATCY	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	697
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	32, 358
BtgI	CCRYGG	3 cut(s)	54, 253, 396
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	4 cut(s)	418, 646, 847, 850
BtsIMutI	CAGTG	4 cut(s)	219, 342, 384, 573
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	920
Csp6I	GTAC	3 cut(s)	85, 541, 810
CviAII	CATG	4 cut(s)	254, 368, 397, 711
CviQI	GTAC	3 cut(s)	85, 541, 810
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	5 cut(s)	66, 431, 443, 609, 699
DpnII	GATC	5 cut(s)	64, 429, 441, 607, 697
DraI	TTTAAA	1 cut(s)	334
DraIII	CACNNNGTG	1 cut(s)	748
EaeI	YGGCCR	2 cut(s)	30, 356
Eco130I	CCWWGG	3 cut(s)	253, 396, 636
Eco24I	GRGCYC	1 cut(s)	564
Eco57I	CTGAAG	2 cut(s)	440, 871
EcoRI	GAATTC	2 cut(s)	475, 858
EcoT14I	CCWWGG	3 cut(s)	253, 396, 636
EcoT22I	ATGCAT	1 cut(s)	732
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	3 cut(s)	253, 396, 636
FaeI	CATG	4 cut(s)	257, 371, 400, 714
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	4 cut(s)	253, 367, 396, 710
FbaI	TGATCA	1 cut(s)	607
Fnu4HI	GCNGC	1 cut(s)	825
FokI	GGATG	4 cut(s)	425, 653, 837, 854
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	825
FspBI	CTAG	2 cut(s)	584, 836
GlaI	GCGC	1 cut(s)	919
GluI	GCNGC	1 cut(s)	825
HaeII	RGCGCY	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	32, 358
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	920
Hin1II	CATG	4 cut(s)	257, 371, 400, 714
Hin6I	GCGC	1 cut(s)	918
HinP1I	GCGC	1 cut(s)	918
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	5 cut(s)	11, 25, 311, 326, 926
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	3 cut(s)	412, 760, 889
Hpy166II	GTNNAC	1 cut(s)	897
Hpy188I	TCNGA	2 cut(s)	10, 931
Hpy188III	TCNNGA	3 cut(s)	368, 534, 759
Hpy8I	GTNNAC	1 cut(s)	897
HpyAV	CCTTC	6 cut(s)	190, 218, 295, 415, 905, 910
HpyCH4III	ACNGT	3 cut(s)	270, 388, 540
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	5 cut(s)	96, 163, 524, 730, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	559
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	4 cut(s)	257, 371, 400, 714
HspAI	GCGC	1 cut(s)	918
KpnI	GGTACC	1 cut(s)	813
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	64, 429, 441, 607, 697
LmnI	GCTCC	2 cut(s)	785, 832
Lsp1109I	GCAGC	1 cut(s)	836
LweI	GCATC	2 cut(s)	511, 739
MaeI	CTAG	2 cut(s)	584, 836
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	2 cut(s)	380, 391
MalI	GATC	5 cut(s)	66, 431, 443, 609, 699
MboI	GATC	5 cut(s)	64, 429, 441, 607, 697
MboII	GAAGA	4 cut(s)	320, 415, 418, 735
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	3 cut(s)	555, 564, 593
MlsI	TGGCCA	1 cut(s)	358
MluCI	AATT	7 cut(s)	49, 88, 121, 475, 626, 858, 957
MluI	ACGCGT	1 cut(s)	505
MluNI	TGGCCA	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	335, 920
MmeI	TCCRAC	2 cut(s)	342, 673
MnlI	CCTC	9 cut(s)	93, 103, 325, 537, 579, 685, 692, 711, 799
Mox20I	TGGCCA	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	358
MseI	TTAA	5 cut(s)	167, 204, 237, 333, 738
Msp20I	TGGCCA	1 cut(s)	358
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	732
MvnI	CGCG	2 cut(s)	69, 507
MwoI	GCNNNNNNNGC	1 cut(s)	559
NcoI	CCATGG	2 cut(s)	253, 396
NdeII	GATC	5 cut(s)	64, 429, 441, 607, 697
NlaIII	CATG	4 cut(s)	257, 371, 400, 714
NlaIV	GGNNCC	2 cut(s)	7, 811
NsiI	ATGCAT	1 cut(s)	732
PagI	TCATGA	1 cut(s)	367
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	3 cut(s)	11, 25, 311
PkrI	GCNGC	1 cut(s)	826
PleI	GAGTC	2 cut(s)	334, 920
PpsI	GAGTC	2 cut(s)	334, 920
PspN4I	GGNNCC	2 cut(s)	7, 811
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	3 cut(s)	86, 542, 811
RsaNI	GTAC	3 cut(s)	85, 541, 810
SaqAI	TTAA	5 cut(s)	167, 204, 237, 333, 738
SatI	GCNGC	1 cut(s)	825
Sau3AI	GATC	5 cut(s)	64, 429, 441, 607, 697
SchI	GAGTC	2 cut(s)	335, 920
SduI	GDGCHC	3 cut(s)	555, 564, 593
SfaNI	GCATC	2 cut(s)	511, 739
SfcI	CTRYAG	2 cut(s)	161, 387
SmlI	CTYRAG	2 cut(s)	737, 863
SmoI	CTYRAG	2 cut(s)	737, 863
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	7 cut(s)	49, 88, 121, 475, 626, 858, 957
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	584, 836
StyI	CCWWGG	3 cut(s)	253, 396, 636
TaaI	ACNGT	3 cut(s)	270, 388, 540
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	2 cut(s)	432, 479
TasI	AATT	7 cut(s)	49, 88, 121, 475, 626, 858, 957
TfiI	GAWTC	3 cut(s)	11, 25, 311
Tru1I	TTAA	5 cut(s)	167, 204, 237, 333, 738
Tru9I	TTAA	5 cut(s)	167, 204, 237, 333, 738
TscAI	CASTG	4 cut(s)	219, 349, 391, 580
TseI	GCWGC	1 cut(s)	824
TspDTI	ATGAA	2 cut(s)	527, 861
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	219, 349, 391, 580
Vha464I	CTTAAG	1 cut(s)	737
XapI	RAATTY	3 cut(s)	475, 626, 858
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	2 cut(s)	584, 836
Zsp2I	ATGCAT	1 cut(s)	732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.