Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000436

Physical Location & Seq

Genomic Coordinates Reverse (-)

7316725 .. 7318632

Gene Structure 1908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGGTTCAGAATCTCAATACCAGATTCCGGCAATAGAATTCGCAATGAATTCGCCAGAAGTGAACCGAGGAACTGATGAGTGGTACCATCTGTGCAAGAAGGTTCGAGAGGCCTGTGAAAATTTTGGTTGCTTCGAAATTGTGTATGATAAGATACCTCCGCAGTTAAGAGCAGAATTCTTCTCTGCGTCAAGAAAACTTTTTAGCCTTCCACTTGAGACAAAAAAGAAGAACATTAATCCAAATCCTTACTACGGTTACCTTGGACCGAGTGTTCTTGCTCCCTTGTATGAAGGCTTTGGCTTTGATGAAACATCCGACTATGAATCCCTAAGAAGCTTCACAGAAGAAATATGGTCTCGTGACCAGCTTTGCACTGTCCTTTCTATGATGAAGAAGCTGGACGAGCTGAAAGATATGATTAACTTGATCATTCTTGATAGCTATGGTTTGGAAGAATCATCAAATTTGATAATGGTGTCTAAGAGGCTGATACGGTTAATGAAGTACGCGGCACCTCCATCAGGGGAGTACACGATGGCTTCTCCGGCTCACACAGACAAGAATTTTGGCACAATCCTATGCGATGATCAAGTTTCAGGTCTTGAAGTACAAATCAAGGTCGATGAACAATGGGTCAAGTTGTCTATATCTCCTCGCTCTTTCGTCTTTGTCGTTGGAGACTCCCTCATGGCATGGAGCAATGGCAGAATGCATTCTGTGAATCATCGGGTGATGATGTGCGGGGAAAAAGAACGATATTCCCTAGCAGCATTTGCACAACCAATAGAGGGTTCCATCATCAAAGCACAAAAGGAGCTAGTAGATGAAGACTACCCCCAAATTCTAAATGATTTCGATTATACCGACTTTTGCAAGTTCATTGGTTCAGAAGGAAGAGCCATCGACACACAAAAGCAAGTTTTCGCGTTTGCTGGAATTGGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

317

Amino Acids

35.97

Weight (kDa)

4.95

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	10 - 89	4.9e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	170 - 262	1.5e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000436)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29950 FvH4_2g29960 FvH4_2g29960 FvH4_2g29960 FvH4_2g29980 FvH4_2g29990 FvH4_3g12330 FvH4_3g12340 FvH4_3g23800 FvH4_3g23801 FvH4_3g23830
prunus_persica	Prupe.1G468200_v2.0.a1 Prupe.1G468300_v2.0.a1 Prupe.1G470900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0342041 RchiOBHm_Chr1g0342061 RchiOBHm_Chr4g0409261 RchiOBHm_Chr4g0418441 RchiOBHm_Chr5g0041931 RchiOBHm_Chr5g0041981 RchiOBHm_Chr5g0043241 RchiOBHm_Chr5g0043271 RchiOBHm_Chr5g0079921 RchiOBHm_Chr5g0079941 RchiOBHm_Chr5g0079991 RchiOBHm_Chr6g0312931
rosa_laevigata	RLG00000007865 RLG00000008582 RLG00000010284 RLG00000029146 RLG00000029147 RLG00000034107 RLG00000034173 RLG00000034175 RLG00000036840 RLG00000036842 RLG00000036843
rosa_multiflora	Rmu_co8315005.1_g000001 Rmu_sc0001148.1_g000001 Rmu_sc0001266.1_g000006 Rmu_sc0002161.1_g000031 Rmu_sc0002377.1_g000011 Rmu_sc0003514.1_g000009 Rmu_sc0003514.1_g000013 Rmu_sc0003514.1_g000017 Rmu_sc0006723.1_g000001 Rmu_sc0008049.1_g000042 Rmu_sc0009443.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003160 Rroxscaffold_1G00003170 Rroxscaffold_1G00037550 Rroxscaffold_1G00038600 Rroxscaffold_4G00312790 Rroxscaffold_5G00361670
rosa_rugosa	Rorug01G0153300.1 Rorug01G0153400.1 Rorug04G0091600 Rorug04G0091700 Rorug04G0091800 Rorug04G0153100 Rorug05G0197600 Rorug05G0204900.1 Rorug05G0467400 Rorug05G0467500 Rorug05G0467600.1 Rorug06G0400500 Rorug06G0400600
rosa_samantha	Rh1BG134400 Rh1BG134500 Rh1DG168500 Rh1DG168600 Rh4BG152600 Rh4BG215900 Rh4DG148000 Rh4DG213000 Rh5CG319800 Rh5CG326800 Rh5CG566100 Rh5CG566400 Rh5CG566600 Rh5DG296900 Rh5DG552900 Rh5DG553200 Rh6CG533800
rosa_wichuraiana	Rw0G001380 Rw0G010030 Rw0G015700 Rw1G013970 Rw4G012650 Rw4G018220 Rw5G026860 Rw5G048330 Rw5G048350 Rw6G044990 Rw6G045000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 514
AccII	CGCG	2 cut(s)	512, 929
AciI	CCGC	3 cut(s)	161, 512, 744
AcsI	RAATTY	7 cut(s)	38, 49, 121, 176, 466, 565, 843
AfaI	GTAC	4 cut(s)	86, 509, 533, 612
AfiI	CCNNNNNNNGG	4 cut(s)	28, 254, 524, 791
AgsI	TTSAA	1 cut(s)	608
AjuI	GAANNNNNNNTTGG	2 cut(s)	778, 810
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
AluBI	AGCT	6 cut(s)	339, 370, 400, 409, 444, 820
AluI	AGCT	6 cut(s)	339, 370, 400, 409, 444, 820
Alw26I	GTCTC	3 cut(s)	212, 363, 675
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	7 cut(s)	38, 49, 121, 176, 466, 565, 843
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AseI	ATTAAT	1 cut(s)	237
Asp700I	GAANNNNTTC	1 cut(s)	715
Asp718I	GGTACC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	745
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	84, 514
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	837
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	5 cut(s)	96, 529, 532, 806, 911
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BclI	TGATCA	2 cut(s)	429, 589
BcoDI	GTCTC	3 cut(s)	212, 363, 675
BfaI	CTAG	2 cut(s)	767, 821
BisI	GCNGC	2 cut(s)	513, 771
BlsI	GCNGC	2 cut(s)	514, 772
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	3 cut(s)	86, 516, 796
BpiI	GAAGAC	1 cut(s)	837
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	67, 262
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 254, 524, 791
Bse3DI	GCAATG	2 cut(s)	51, 709
BseDI	CCNNGG	2 cut(s)	67, 262
BseGI	GGATG	1 cut(s)	314
BseLI	CCNNNNNNNGG	4 cut(s)	28, 254, 524, 791
BseMI	GCAATG	2 cut(s)	51, 709
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	1 cut(s)	782
Bsh1236I	CGCG	2 cut(s)	512, 929
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	2 cut(s)	84, 514
BsiSI	CCGG	2 cut(s)	29, 548
BslI	CCNNNNNNNGG	4 cut(s)	28, 254, 524, 791
BsmAI	GTCTC	3 cut(s)	212, 363, 675
BsmI	GAATGC	2 cut(s)	715, 717
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	429, 589
BspACI	CCGC	3 cut(s)	161, 512, 744
BspANI	GGCC	1 cut(s)	113
BspFNI	CGCG	2 cut(s)	512, 929
BspLI	GGNNCC	3 cut(s)	86, 516, 796
BspQI	GCTCTTC	1 cut(s)	892
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	84, 514
BspTNI	GGTCTC	1 cut(s)	363
BsrDI	GCAATG	2 cut(s)	51, 709
BssECI	CCNNGG	2 cut(s)	67, 262
BssMI	GATC	2 cut(s)	429, 589
BssSI	CACGAG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	360
Bst4CI	ACNGT	3 cut(s)	257, 379, 498
Bst6I	CTCTTC	1 cut(s)	892
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	332, 483
BstEII	GGTNACC	1 cut(s)	257
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	314
BstFNI	CGCG	2 cut(s)	512, 929
BstKTI	GATC	2 cut(s)	432, 592
BstMAI	GTCTC	3 cut(s)	212, 363, 675
BstMBI	GATC	2 cut(s)	429, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 548, 776
BstPI	GGTNACC	1 cut(s)	257
BstUI	CGCG	2 cut(s)	512, 929
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	837
BsuRI	GGCC	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	375
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	4 cut(s)	85, 508, 532, 611
CviAII	CATG	2 cut(s)	691, 696
CviQI	GTAC	4 cut(s)	85, 508, 532, 611
DdeI	CTNAG	2 cut(s)	332, 483
DpnI	GATC	2 cut(s)	431, 591
DpnII	GATC	2 cut(s)	429, 589
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Eco130I	CCWWGG	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	3 cut(s)	38, 49, 176
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	694, 699
FatI	CATG	2 cut(s)	690, 695
FauI	CCCGC	1 cut(s)	737
FbaI	TGATCA	2 cut(s)	429, 589
Fnu4HI	GCNGC	2 cut(s)	513, 771
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	513, 771
FspBI	CTAG	2 cut(s)	767, 821
GluI	GCNGC	2 cut(s)	513, 771
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	29, 548
HgaI	GACGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	694, 699
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	6 cut(s)	11, 25, 326, 458, 683, 724
HpaII	CCGG	2 cut(s)	29, 548
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	2 cut(s)	64, 534
Hpy188I	TCNGA	3 cut(s)	10, 319, 892
Hpy188III	TCNNGA	5 cut(s)	107, 192, 362, 437, 605
Hpy8I	GTNNAC	2 cut(s)	64, 534
HpyAV	CCTTC	4 cut(s)	94, 218, 287, 887
HpyCH4III	ACNGT	3 cut(s)	257, 379, 498
HpyCH4V	TGCA	5 cut(s)	96, 375, 715, 779, 876
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 548, 776
HpyF3I	CTNAG	2 cut(s)	332, 483
Hsp92II	CATG	2 cut(s)	694, 699
KpnI	GGTACC	1 cut(s)	88
Ksp22I	TGATCA	2 cut(s)	429, 589
Kzo9I	GATC	2 cut(s)	429, 589
LguI	GCTCTTC	1 cut(s)	892
LmnI	GCTCC	3 cut(s)	286, 699, 817
Lsp1109I	GCAGC	1 cut(s)	782
MaeI	CTAG	2 cut(s)	767, 821
MaeIII	GTNAC	2 cut(s)	257, 362
MalI	GATC	2 cut(s)	431, 591
MboI	GATC	2 cut(s)	429, 589
MboII	GAAGA	7 cut(s)	172, 241, 359, 406, 467, 842, 909
MlyI	GAGTC	1 cut(s)	677
MmeI	TCCRAC	2 cut(s)	342, 658
MnlI	CCTC	8 cut(s)	62, 103, 168, 480, 528, 666, 698, 784
Mph1103I	ATGCAT	1 cut(s)	717
MroXI	GAANNNNTTC	1 cut(s)	715
MseI	TTAA	5 cut(s)	167, 237, 423, 500, 949
MspI	CCGG	2 cut(s)	29, 548
Mva1269I	GAATGC	2 cut(s)	715, 717
MvnI	CGCG	2 cut(s)	512, 929
MwoI	GCNNNNNNNGC	3 cut(s)	406, 548, 776
NdeII	GATC	2 cut(s)	429, 589
NlaIII	CATG	2 cut(s)	694, 699
NlaIV	GGNNCC	3 cut(s)	86, 516, 796
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	717
NspV	TTCGAA	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	2 cut(s)	672, 864
PctI	GAATGC	2 cut(s)	715, 717
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	5 cut(s)	11, 25, 326, 458, 724
PkrI	GCNGC	2 cut(s)	514, 772
PleI	GAGTC	1 cut(s)	677
PpsI	GAGTC	1 cut(s)	677
PshBI	ATTAAT	1 cut(s)	237
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	3 cut(s)	86, 516, 796
PspPI	GGNCC	1 cut(s)	266
RsaI	GTAC	4 cut(s)	86, 509, 533, 612
RsaNI	GTAC	4 cut(s)	85, 508, 532, 611
SapI	GCTCTTC	1 cut(s)	892
SaqAI	TTAA	5 cut(s)	167, 237, 423, 500, 949
SatI	GCNGC	2 cut(s)	513, 771
Sau3AI	GATC	2 cut(s)	429, 589
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	677
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SseBI	AGGCCT	1 cut(s)	113
SsiI	CCGC	3 cut(s)	161, 512, 744
SspMI	CTAG	2 cut(s)	767, 821
StuI	AGGCCT	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	257, 379, 498
TaqI	TCGA	5 cut(s)	106, 135, 624, 858, 906
TaqII	GACCGA	1 cut(s)	283
TatI	WGTACW	2 cut(s)	531, 610
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	5 cut(s)	11, 25, 326, 458, 724
Tru1I	TTAA	5 cut(s)	167, 237, 423, 500, 949
Tru9I	TTAA	5 cut(s)	167, 237, 423, 500, 949
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	1 cut(s)	770
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	9 cut(s)	62, 306, 324, 339, 407, 518, 642, 843, 871
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	237
XagI	CCTNNNNNAGG	1 cut(s)	522
XapI	RAATTY	7 cut(s)	38, 49, 121, 176, 466, 565, 843
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	2 cut(s)	767, 821
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.