gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 10 - 185 | 3.8e-19 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 63, 816 |
| AclWI | GGATC | 2 cut(s) | 892, 1179 |
| AcsI | RAATTY | 9 cut(s) | 303, 317, 646, 674, 727, 966, 1031, 1544, 1566 |
| AcuI | CTGAAG | 3 cut(s) | 333, 1160, 1299 |
| AdeI | CACNNNGTG | 2 cut(s) | 194, 430 |
| AfaI | GTAC | 4 cut(s) | 91, 102, 221, 498 |
| AfeI | AGCGCT | 1 cut(s) | 453 |
| AflIII | ACRYGT | 1 cut(s) | 249 |
| AjnI | CCWGG | 1 cut(s) | 944 |
| Alw21I | GWGCWC | 2 cut(s) | 426, 1538 |
| AlwI | GGATC | 2 cut(s) | 892, 1179 |
| Ama87I | CYCGRG | 1 cut(s) | 739 |
| Aor51HI | AGCGCT | 1 cut(s) | 453 |
| AoxI | GGCC | 1 cut(s) | 927 |
| ApeKI | GCWGC | 2 cut(s) | 482, 1210 |
| ApoI | RAATTY | 9 cut(s) | 303, 317, 646, 674, 727, 966, 1031, 1544, 1566 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1590 |
| AspLEI | GCGC | 2 cut(s) | 213, 454 |
| AspS9I | GGNCC | 1 cut(s) | 928 |
| AsuHPI | GGTGA | 4 cut(s) | 350, 445, 923, 1177 |
| AvaI | CYCGRG | 1 cut(s) | 739 |
| BanII | GRGCYC | 1 cut(s) | 1538 |
| Bbv12I | GWGCWC | 2 cut(s) | 426, 1538 |
| BbvI | GCAGC | 2 cut(s) | 494, 1222 |
| BccI | CCATC | 1 cut(s) | 1061 |
| BciT130I | CCWGG | 1 cut(s) | 946 |
| BfaI | CTAG | 6 cut(s) | 168, 191, 521, 696, 723, 1059 |
| BfmI | CTRYAG | 2 cut(s) | 72, 1208 |
| BfoI | RGCGCY | 1 cut(s) | 455 |
| BglII | AGATCT | 1 cut(s) | 526 |
| BisI | GCNGC | 2 cut(s) | 483, 1211 |
| BlsI | GCNGC | 2 cut(s) | 484, 1212 |
| BmcAI | AGTACT | 2 cut(s) | 91, 221 |
| Bme1390I | CCNGG | 1 cut(s) | 946 |
| BmeT110I | CYCGRG | 1 cut(s) | 739 |
| BmgT120I | GGNCC | 1 cut(s) | 928 |
| BmrFI | CCNGG | 1 cut(s) | 946 |
| BmsI | GCATC | 1 cut(s) | 19 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 90, 122, 1367, 1399 |
| BpmI | CTGGAG | 2 cut(s) | 117, 967 |
| Bpu10I | CCTNAGC | 2 cut(s) | 198, 234 |
| BpuEI | CTTGAG | 2 cut(s) | 917, 1552 |
| BsaJI | CCNNGG | 1 cut(s) | 24 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 940, 970 |
| Bse1I | ACTGG | 1 cut(s) | 1095 |
| Bse3DI | GCAATG | 2 cut(s) | 157, 1327 |
| BseBI | CCWGG | 1 cut(s) | 946 |
| BseDI | CCNNGG | 1 cut(s) | 24 |
| BseGI | GGATG | 5 cut(s) | 34, 278, 349, 412, 1099 |
| BseMI | GCAATG | 2 cut(s) | 157, 1327 |
| BseMII | CTCAG | 6 cut(s) | 460, 771, 1193, 1365, 1403, 1548 |
| BseNI | ACTGG | 1 cut(s) | 1095 |
| BseRI | GAGGAG | 1 cut(s) | 434 |
| BseXI | GCAGC | 2 cut(s) | 494, 1222 |
| BsgI | GTGCAG | 3 cut(s) | 171, 246, 1500 |
| BshFI | GGCC | 1 cut(s) | 929 |
| BsiHKAI | GWGCWC | 2 cut(s) | 426, 1538 |
| BsiHKCI | CYCGRG | 1 cut(s) | 739 |
| BslFI | GGGAC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 1 cut(s) | 260 |
| BsmI | GAATGC | 1 cut(s) | 213 |
| BsnI | GGCC | 1 cut(s) | 929 |
| BsoBI | CYCGRG | 1 cut(s) | 739 |
| Bsp1286I | GDGCHC | 2 cut(s) | 426, 1538 |
| Bsp143I | GATC | 3 cut(s) | 526, 884, 1171 |
| BspANI | GGCC | 1 cut(s) | 929 |
| BspCNI | CTCAG | 6 cut(s) | 459, 770, 1194, 1366, 1404, 1549 |
| BspMAI | CTGCAG | 1 cut(s) | 1212 |
| BspPI | GGATC | 2 cut(s) | 892, 1179 |
| BspQI | GCTCTTC | 1 cut(s) | 724 |
| BsrDI | GCAATG | 2 cut(s) | 157, 1327 |
| BsrI | ACTGG | 1 cut(s) | 1095 |
| BssECI | CCNNGG | 1 cut(s) | 24 |
| BssMI | GATC | 3 cut(s) | 526, 884, 1171 |
| BssT1I | CCWWGG | 1 cut(s) | 24 |
| Bst2UI | CCWGG | 1 cut(s) | 946 |
| Bst4CI | ACNGT | 3 cut(s) | 224, 283, 866 |
| Bst6I | CTCTTC | 1 cut(s) | 724 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 1 cut(s) | 1581 |
| BstDEI | CTNAG | 9 cut(s) | 198, 234, 446, 757, 1133, 1202, 1374, 1412, 1557 |
| BstF5I | GGATG | 5 cut(s) | 34, 278, 349, 412, 1099 |
| BstH2I | RGCGCY | 1 cut(s) | 455 |
| BstHHI | GCGC | 2 cut(s) | 213, 454 |
| BstKTI | GATC | 3 cut(s) | 529, 887, 1174 |
| BstMBI | GATC | 3 cut(s) | 526, 884, 1171 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 173, 194, 239, 1207, 1487 |
| BstNI | CCWGG | 1 cut(s) | 946 |
| BstNSI | RCATGY | 1 cut(s) | 253 |
| BstSCI | CCNGG | 1 cut(s) | 944 |
| BstSFI | CTRYAG | 2 cut(s) | 72, 1208 |
| BstV1I | GCAGC | 2 cut(s) | 494, 1222 |
| BstX2I | RGATCY | 2 cut(s) | 526, 1171 |
| BstYI | RGATCY | 2 cut(s) | 526, 1171 |
| BsuRI | GGCC | 1 cut(s) | 929 |
| BtsCI | GGATG | 5 cut(s) | 34, 278, 349, 412, 1099 |
| BtsIMutI | CAGTG | 1 cut(s) | 1371 |
| Cac8I | GCNNGC | 1 cut(s) | 1581 |
| CfoI | GCGC | 2 cut(s) | 213, 454 |
| Cfr13I | GGNCC | 1 cut(s) | 928 |
| Csp6I | GTAC | 4 cut(s) | 90, 101, 220, 497 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1309, 1344 |
| CviAII | CATG | 5 cut(s) | 250, 266, 490, 1026, 1227 |
| CviQI | GTAC | 4 cut(s) | 90, 101, 220, 497 |
| DdeI | CTNAG | 9 cut(s) | 198, 234, 446, 757, 1133, 1202, 1374, 1412, 1557 |
| DpnI | GATC | 3 cut(s) | 528, 886, 1173 |
| DpnII | GATC | 3 cut(s) | 526, 884, 1171 |
| DraIII | CACNNNGTG | 2 cut(s) | 194, 430 |
| Eam1104I | CTCTTC | 1 cut(s) | 724 |
| EarI | CTCTTC | 1 cut(s) | 724 |
| Ecl136II | GAGCTC | 1 cut(s) | 1536 |
| Eco130I | CCWWGG | 1 cut(s) | 24 |
| Eco24I | GRGCYC | 1 cut(s) | 1538 |
| Eco47III | AGCGCT | 1 cut(s) | 453 |
| Eco53kI | GAGCTC | 1 cut(s) | 1536 |
| Eco57I | CTGAAG | 3 cut(s) | 333, 1160, 1299 |
| Eco88I | CYCGRG | 1 cut(s) | 739 |
| EcoICRI | GAGCTC | 1 cut(s) | 1536 |
| EcoO109I | RGGNCCY | 1 cut(s) | 928 |
| EcoRI | GAATTC | 1 cut(s) | 674 |
| EcoRII | CCWGG | 1 cut(s) | 944 |
| EcoT14I | CCWWGG | 1 cut(s) | 24 |
| EcoT38I | GRGCYC | 1 cut(s) | 1538 |
| ErhI | CCWWGG | 1 cut(s) | 24 |
| FaeI | CATG | 5 cut(s) | 253, 269, 493, 1029, 1230 |
| FaqI | GGGAC | 1 cut(s) | 260 |
| FatI | CATG | 5 cut(s) | 249, 265, 489, 1025, 1226 |
| Fnu4HI | GCNGC | 2 cut(s) | 483, 1211 |
| FokI | GGATG | 5 cut(s) | 41, 285, 356, 419, 1106 |
| FriOI | GRGCYC | 1 cut(s) | 1538 |
| Fsp4HI | GCNGC | 2 cut(s) | 483, 1211 |
| FspBI | CTAG | 6 cut(s) | 168, 191, 521, 696, 723, 1059 |
| GlaI | GCGC | 2 cut(s) | 212, 453 |
| GluI | GCNGC | 2 cut(s) | 483, 1211 |
| GsuI | CTGGAG | 2 cut(s) | 117, 967 |
| HaeII | RGCGCY | 1 cut(s) | 455 |
| HaeIII | GGCC | 1 cut(s) | 929 |
| HhaI | GCGC | 2 cut(s) | 213, 454 |
| Hin1II | CATG | 5 cut(s) | 253, 269, 493, 1029, 1230 |
| Hin6I | GCGC | 2 cut(s) | 211, 452 |
| HinP1I | GCGC | 2 cut(s) | 211, 452 |
| HincII | GTYRAC | 2 cut(s) | 118, 666 |
| HindII | GTYRAC | 2 cut(s) | 118, 666 |
| HindIII | AAGCTT | 3 cut(s) | 141, 325, 1528 |
| HinfI | GANTC | 5 cut(s) | 289, 737, 897, 1040, 1204 |
| HpaI | GTTAAC | 1 cut(s) | 666 |
| HphI | GGTGA | 4 cut(s) | 350, 445, 923, 1177 |
| Hpy166II | GTNNAC | 3 cut(s) | 118, 126, 666 |
| Hpy188III | TCNNGA | 8 cut(s) | 96, 286, 521, 679, 723, 741, 888, 1178 |
| Hpy8I | GTNNAC | 3 cut(s) | 118, 126, 666 |
| HpyAV | CCTTC | 4 cut(s) | 201, 263, 1077, 1162 |
| HpyCH4III | ACNGT | 3 cut(s) | 224, 283, 866 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 173, 194, 239, 1207, 1487 |
| HpyF3I | CTNAG | 9 cut(s) | 198, 234, 446, 757, 1133, 1202, 1374, 1412, 1557 |
| Hsp92II | CATG | 5 cut(s) | 253, 269, 493, 1029, 1230 |
| HspAI | GCGC | 2 cut(s) | 211, 452 |
| KspAI | GTTAAC | 1 cut(s) | 666 |
| Kzo9I | GATC | 3 cut(s) | 526, 884, 1171 |
| LguI | GCTCTTC | 1 cut(s) | 724 |
| LmnI | GCTCC | 1 cut(s) | 421 |
| Lsp1109I | GCAGC | 2 cut(s) | 494, 1222 |
| LweI | GCATC | 1 cut(s) | 19 |
| MaeI | CTAG | 6 cut(s) | 168, 191, 521, 696, 723, 1059 |
| MaeIII | GTNAC | 5 cut(s) | 256, 373, 937, 1003, 1514 |
| MalI | GATC | 3 cut(s) | 528, 886, 1173 |
| MboI | GATC | 3 cut(s) | 526, 884, 1171 |
| MflI | RGATCY | 2 cut(s) | 526, 1171 |
| MhlI | GDGCHC | 2 cut(s) | 426, 1538 |
| MlyI | GAGTC | 2 cut(s) | 731, 1213 |
| MnlI | CCTC | 7 cut(s) | 232, 334, 412, 487, 941, 1407, 1513 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1590 |
| MseI | TTAA | 4 cut(s) | 665, 1014, 1020, 1421 |
| MspA1I | CMGCKG | 1 cut(s) | 1213 |
| MspR9I | CCNGG | 1 cut(s) | 946 |
| Mva1269I | GAATGC | 1 cut(s) | 213 |
| MvaI | CCWGG | 1 cut(s) | 946 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 173, 194, 239, 1207, 1487 |
| NdeII | GATC | 3 cut(s) | 526, 884, 1171 |
| NlaIII | CATG | 5 cut(s) | 253, 269, 493, 1029, 1230 |
| NspI | RCATGY | 1 cut(s) | 253 |
| PaeR7I | CTCGAG | 1 cut(s) | 739 |
| PciI | ACATGT | 1 cut(s) | 249 |
| PciSI | GCTCTTC | 1 cut(s) | 724 |
| PctI | GAATGC | 1 cut(s) | 213 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1590 |
| PfeI | GAWTC | 3 cut(s) | 289, 897, 1040 |
| PfoI | TCCNGGA | 1 cut(s) | 944 |
| PkrI | GCNGC | 2 cut(s) | 484, 1212 |
| PleI | GAGTC | 2 cut(s) | 731, 1212 |
| PpsI | GAGTC | 2 cut(s) | 731, 1212 |
| PscI | ACATGT | 1 cut(s) | 249 |
| PsiI | TTATAA | 2 cut(s) | 63, 816 |
| Psp124BI | GAGCTC | 1 cut(s) | 1538 |
| Psp6I | CCWGG | 1 cut(s) | 944 |
| PspGI | CCWGG | 1 cut(s) | 944 |
| PspPI | GGNCC | 1 cut(s) | 928 |
| PstI | CTGCAG | 1 cut(s) | 1212 |
| PsuI | RGATCY | 2 cut(s) | 526, 1171 |
| PvuII | CAGCTG | 1 cut(s) | 1213 |
| RsaI | GTAC | 4 cut(s) | 91, 102, 221, 498 |
| RsaNI | GTAC | 4 cut(s) | 90, 101, 220, 497 |
| SacI | GAGCTC | 1 cut(s) | 1538 |
| SapI | GCTCTTC | 1 cut(s) | 724 |
| SaqAI | TTAA | 4 cut(s) | 665, 1014, 1020, 1421 |
| SatI | GCNGC | 2 cut(s) | 483, 1211 |
| Sau3AI | GATC | 3 cut(s) | 526, 884, 1171 |
| Sau96I | GGNCC | 1 cut(s) | 928 |
| ScaI | AGTACT | 2 cut(s) | 91, 221 |
| SchI | GAGTC | 2 cut(s) | 731, 1213 |
| ScrFI | CCNGG | 1 cut(s) | 946 |
| SduI | GDGCHC | 2 cut(s) | 426, 1538 |
| SfaNI | GCATC | 1 cut(s) | 19 |
| SfcI | CTRYAG | 2 cut(s) | 72, 1208 |
| Sfr274I | CTCGAG | 1 cut(s) | 739 |
| SlaI | CTCGAG | 1 cut(s) | 739 |
| SmlI | CTYRAG | 3 cut(s) | 739, 932, 1531 |
| SmoI | CTYRAG | 3 cut(s) | 739, 932, 1531 |
| SspI | AATATT | 1 cut(s) | 515 |
| SspMI | CTAG | 6 cut(s) | 168, 191, 521, 696, 723, 1059 |
| SstI | GAGCTC | 1 cut(s) | 1538 |
| StyD4I | CCNGG | 1 cut(s) | 944 |
| StyI | CCWWGG | 1 cut(s) | 24 |
| TaaI | ACNGT | 3 cut(s) | 224, 283, 866 |
| TaqI | TCGA | 2 cut(s) | 740, 1454 |
| TatI | WGTACW | 3 cut(s) | 89, 100, 219 |
| TfiI | GAWTC | 3 cut(s) | 289, 897, 1040 |
| Tru1I | TTAA | 4 cut(s) | 665, 1014, 1020, 1421 |
| Tru9I | TTAA | 4 cut(s) | 665, 1014, 1020, 1421 |
| TscAI | CASTG | 1 cut(s) | 1378 |
| TseI | GCWGC | 2 cut(s) | 482, 1210 |
| TspRI | CASTG | 1 cut(s) | 1378 |
| XapI | RAATTY | 9 cut(s) | 303, 317, 646, 674, 727, 966, 1031, 1544, 1566 |
| XbaI | TCTAGA | 2 cut(s) | 520, 722 |
| XceI | RCATGY | 1 cut(s) | 253 |
| XhoI | CTCGAG | 1 cut(s) | 739 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1590 |
| XspI | CTAG | 6 cut(s) | 168, 191, 521, 696, 723, 1059 |
| ZrmI | AGTACT | 2 cut(s) | 91, 221 |