Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385793.1

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 968

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385793.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 755 bp

atgaagcatggaaatggcaacaacaaatctcttctttctacatggagtgatgatgaaactcaagagatggaaaatgtagcttttgtatcatctctctcacttgagtcagatagtgatggaggttccttagatgatgagaccactatacgctgcaaacaactctataaagcgttaaaagctacactcctcaagaatgcaaatttggaagaagaggttgagttgttaaaagctgagaatgataaactggaacttatgttgaagacctctcagactacatgggaacaagaaagaaccaagttcactgaagagtcactcaacgcgcaaggagtcaacaattcactgaagtggaaaacagaacgtgctgagcttaaaaacaagatcaaactactggaacttgaggtaagaggaaaacatgctttgaatttgaatttgctcattgaaaatgaatcattgcagatagaactaaagtctactcaagaaaagttcacaaaatttgaaataagctcaggtgcagtatcaaaattatttggttcaggaaaggcctatcatgttactttcggactaggctactctggagaaagtaccaaaagtacatgctttgtaaaagagatgagtccagcaaaaaatgacctggttactaaggttatcaaggaaaccaacacagtacctgagaacaaaggtggtgaacaacctaaacatgatcaaaatgccaaacaggtaaatattgaccaaggaacatcaactggtcaaaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.99

Weight (kDa)

5.46

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	1 cut(s)	320
AcsI	RAATTY	4 cut(s)	199, 421, 427, 491
AcuI	CTGAAG	2 cut(s)	324, 362
AfaI	GTAC	3 cut(s)	583, 592, 666
AgsI	TTSAA	5 cut(s)	259, 421, 427, 440, 497
AjnI	CCWGG	1 cut(s)	630
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AleI	CACNNNNGTG	1 cut(s)	343
AluBI	AGCT	5 cut(s)	80, 179, 230, 367, 504
AluI	AGCT	5 cut(s)	80, 179, 230, 367, 504
Alw26I	GTCTC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	4 cut(s)	199, 421, 427, 491
AspLEI	GCGC	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	2 cut(s)	61, 110
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	563
BisI	GCNGC	1 cut(s)	151
BlpI	GCTNAGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	266
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	505
Bpu1102I	GCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	5 cut(s)	45, 122, 173, 416, 459
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	730
Bse1I	ACTGG	3 cut(s)	249, 393, 748
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	1 cut(s)	730
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	5 cut(s)	222, 281, 354, 519, 660
BseNI	ACTGG	3 cut(s)	249, 393, 748
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	542
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	542
Bso31I	GGTCTC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	378, 700
Bsp1720I	GCTNAGC	1 cut(s)	363
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	5 cut(s)	223, 280, 355, 518, 661
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	249, 393, 748
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	2 cut(s)	378, 700
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	664
Bst6I	CTCTTC	3 cut(s)	36, 204, 300
BstDEI	CTNAG	7 cut(s)	127, 231, 267, 363, 505, 639, 669
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	2 cut(s)	381, 703
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	378, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	2 cut(s)	416, 597
BstSCI	CCNGG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	542
BtsIMutI	CAGTG	2 cut(s)	300, 338
CaiI	CAGNNNCTG	1 cut(s)	668
CfoI	GCGC	1 cut(s)	322
CsiI	ACCWGGT	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	582, 591, 665
CviAII	CATG	7 cut(s)	8, 42, 276, 413, 548, 594, 698
CviJI	RGCY	7 cut(s)	80, 179, 230, 367, 504, 542, 567
CviKI_1	RGCY	7 cut(s)	80, 179, 230, 367, 504, 542, 567
CviQI	GTAC	3 cut(s)	582, 591, 665
DdeI	CTNAG	7 cut(s)	127, 231, 267, 363, 505, 639, 669
DpnI	GATC	2 cut(s)	380, 702
DpnII	GATC	2 cut(s)	378, 700
Eam1104I	CTCTTC	3 cut(s)	36, 204, 300
EarI	CTCTTC	3 cut(s)	36, 204, 300
Eco130I	CCWWGG	1 cut(s)	730
Eco147I	AGGCCT	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	324, 362
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	7 cut(s)	11, 45, 279, 416, 551, 597, 701
FatI	CATG	7 cut(s)	7, 41, 275, 412, 547, 593, 697
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	7 cut(s)	11, 45, 279, 416, 551, 597, 701
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	5 cut(s)	104, 308, 327, 446, 613
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	5 cut(s)	300, 331, 471, 486, 686
Hpy188I	TCNGA	3 cut(s)	109, 270, 560
Hpy188III	TCNNGA	5 cut(s)	62, 190, 476, 534, 573
Hpy8I	GTNNAC	5 cut(s)	300, 331, 471, 486, 686
HpyCH4III	ACNGT	1 cut(s)	664
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	153, 197, 454, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	7 cut(s)	127, 231, 267, 363, 505, 639, 669
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	7 cut(s)	11, 45, 279, 416, 551, 597, 701
HspAI	GCGC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	2 cut(s)	378, 700
Lsp1109I	GCAGC	1 cut(s)	137
MabI	ACCWGGT	1 cut(s)	630
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	3 cut(s)	309, 550, 634
MalI	GATC	2 cut(s)	380, 702
MboI	GATC	2 cut(s)	378, 700
MboII	GAAGA	5 cut(s)	23, 218, 221, 271, 317
MluCI	AATT	6 cut(s)	199, 334, 421, 427, 491, 521
MlyI	GAGTC	4 cut(s)	113, 317, 336, 622
MnlI	CCTC	6 cut(s)	113, 197, 205, 274, 391, 398
MseI	TTAA	3 cut(s)	173, 224, 369
MslI	CAYNNNNRTG	2 cut(s)	12, 343
MspR9I	CCNGG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	632
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	2 cut(s)	378, 700
NlaIII	CATG	7 cut(s)	11, 45, 279, 416, 551, 597, 701
NlaIV	GGNNCC	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	309
NspI	RCATGY	2 cut(s)	416, 597
OliI	CACNNNNGTG	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	542
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	4 cut(s)	112, 316, 335, 621
PpsI	GAGTC	4 cut(s)	112, 316, 335, 621
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	583, 592, 666
RsaNI	GTAC	3 cut(s)	582, 591, 665
RseI	CAYNNNNRTG	2 cut(s)	12, 343
SaqAI	TTAA	3 cut(s)	173, 224, 369
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	2 cut(s)	378, 700
SchI	GAGTC	4 cut(s)	113, 317, 336, 622
ScrFI	CCNGG	1 cut(s)	632
SexAI	ACCWGGT	1 cut(s)	630
SmiMI	CAYNNNNRTG	2 cut(s)	12, 343
SmlI	CTYRAG	5 cut(s)	60, 101, 188, 395, 474
SmoI	CTYRAG	5 cut(s)	60, 101, 188, 395, 474
Sse9I	AATT	6 cut(s)	199, 334, 421, 427, 491, 521
SseBI	AGGCCT	1 cut(s)	542
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	1 cut(s)	563
StuI	AGGCCT	1 cut(s)	542
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	1 cut(s)	664
TaiI	ACGT	1 cut(s)	361
TasI	AATT	6 cut(s)	199, 334, 421, 427, 491, 521
TatI	WGTACW	1 cut(s)	590
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	3 cut(s)	173, 224, 369
Tru9I	TTAA	3 cut(s)	173, 224, 369
TscAI	CASTG	2 cut(s)	307, 345
TseFI	GTSAC	1 cut(s)	309
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	3 cut(s)	17, 69, 459
TspRI	CASTG	2 cut(s)	307, 345
XapI	RAATTY	4 cut(s)	199, 421, 427, 491
XceI	RCATGY	2 cut(s)	416, 597
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.