FvH4_6g45941

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
35144076 .. 35146580
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45941.t1

Sequence Viewer

Length: 429 bp
ATGGAGTTCAAAGATTTCCAAGCGTGTGACAAAGGGAAGACCCGGCCGGTTTATGACGGAAGGTCTCTTGCCATAGACCTTCGTGGCTCCATTGAAGACCTTCGTGGATTCAAGTCCTTCGTGGCGTTTCAAGACCTTCGTGGCTTCAACGACCTCCGTGGCGTTATCATCTTTCGTGGCAACAAAGACCTTCGTGGCTTTGTATTACACTTGACCGTGTTCTTCAAGTGTGAAGCGCAGAGGTGCAAAAGGCGCAGCACAGGGCGCAAAAGGCGCAAAAAACGCACCCCAAGGCGCATAAGGCTCGACCACCGCCTCGTCGCTGTCTTCTGCAACTCAATCGCCTCAAAGCTCTTCCTCCTAAGCCTCGCATTGCGGTCACCAACTCACCATAGATTTGAGGCAGCATTTACAAGAAGCTGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.58

Weight (kDa)

11.16

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 313, 376
AcoI YGGCCR 1 cut(s) 44
AgsI TTSAA 6 cut(s) 10, 95, 112, 131, 148, 226
AhdI GACNNNNNGTC 1 cut(s) 61
AluBI AGCT 2 cut(s) 352, 420
AluI AGCT 2 cut(s) 352, 420
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 3 cut(s) 255, 404, 420
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 5 cut(s) 238, 255, 267, 276, 297
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 372, 380
BbsI GAAGAC 3 cut(s) 44, 102, 319
BbvI GCAGC 3 cut(s) 267, 407, 416
BcgI CGANNNNNNTGC 4 cut(s) 286, 320, 322, 356
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 3 cut(s) 256, 405, 421
BlsI GCNGC 3 cut(s) 257, 406, 422
Bme1390I CCNGG 1 cut(s) 43
BmeRI GACNNNNNGTC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 43
BpiI GAAGAC 3 cut(s) 44, 102, 319
Bpu10I CCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 157, 290
Bse118I RCCGGY 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 157, 290
BseMI GCAATG 1 cut(s) 371
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 3 cut(s) 267, 407, 416
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 43, 47
BsmAI GTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 69
BspACI CCGC 2 cut(s) 313, 376
BspANI GGCC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 371
BsrFI RCCGGY 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 2 cut(s) 157, 290
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 362
BstDSI CCRYGG 1 cut(s) 157
BstEII GGTNACC 1 cut(s) 378
BstHHI GCGC 5 cut(s) 238, 255, 267, 276, 297
BstMAI GTCTC 1 cut(s) 69
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 6 cut(s) 252, 264, 271, 273, 282, 301
BstPI GGTNACC 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 267, 407, 416
BstV2I GAAGAC 3 cut(s) 44, 102, 319
BstZI CGGCCG 1 cut(s) 44
BsuRI GGCC 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 157
CfoI GCGC 5 cut(s) 238, 255, 267, 276, 297
Cfr10I RCCGGY 1 cut(s) 46
CviJI RGCY 8 cut(s) 46, 87, 144, 198, 304, 352, 366, 420
CviKI_1 RGCY 8 cut(s) 46, 87, 144, 198, 304, 352, 366, 420
DdeI CTNAG 1 cut(s) 362
DriI GACNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 44
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 359
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 359
EclXI CGGCCG 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 69
Eco52I CGGCCG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 378
EcoO65I GGTNACC 1 cut(s) 378
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaiI YATR 4 cut(s) 54, 74, 299, 393
Fnu4HI GCNGC 3 cut(s) 256, 405, 421
Fsp4HI GCNGC 3 cut(s) 256, 405, 421
GlaI GCGC 5 cut(s) 237, 254, 266, 275, 296
GluI GCNGC 3 cut(s) 256, 405, 421
HaeIII GGCC 1 cut(s) 46
HapII CCGG 2 cut(s) 43, 47
HhaI GCGC 5 cut(s) 238, 255, 267, 276, 297
Hin6I GCGC 5 cut(s) 236, 253, 265, 274, 295
HinP1I GCGC 5 cut(s) 236, 253, 265, 274, 295
HinfI GANTC 1 cut(s) 108
HpaII CCGG 2 cut(s) 43, 47
HphI GGTGA 2 cut(s) 372, 380
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 6 cut(s) 54, 89, 110, 127, 146, 200
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 246, 333
HpyF10VI GCNNNNNNNGC 6 cut(s) 252, 264, 271, 273, 282, 301
HpyF3I CTNAG 1 cut(s) 362
HspAI GCGC 5 cut(s) 236, 253, 265, 274, 295
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 3 cut(s) 56, 60, 246
Lsp1109I GCAGC 3 cut(s) 267, 407, 416
MaeIII GTNAC 2 cut(s) 26, 378
MboII GAAGA 5 cut(s) 49, 107, 214, 319, 346
MnlI CCTC 7 cut(s) 164, 234, 326, 355, 368, 377, 394
MroXI GAANNNNTTC 1 cut(s) 99
MspI CCGG 2 cut(s) 43, 47
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 6 cut(s) 252, 264, 271, 273, 282, 301
NciI CCSGG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 88
NmuCI GTSAC 2 cut(s) 26, 378
PciSI GCTCTTC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 3 cut(s) 257, 406, 422
PspEI GGTNACC 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 88
SapI GCTCTTC 1 cut(s) 359
SatI GCNGC 3 cut(s) 256, 405, 421
ScrFI CCNGG 1 cut(s) 43
SetI ASST 9 cut(s) 65, 81, 102, 138, 156, 192, 245, 354, 422
SsiI CCGC 2 cut(s) 313, 376
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 306
TfiI GAWTC 1 cut(s) 108
TseFI GTSAC 2 cut(s) 26, 378
TseI GCWGC 3 cut(s) 255, 404, 420
Tsp45I GTSAC 2 cut(s) 26, 378
TspGWI ACGGA 2 cut(s) 72, 146
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.