Rh1CG187800

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000703
Physical Location & Seq
Forward (+)
40968228 .. 40970283
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG187800.1

Sequence Viewer

Length: 492 bp
ATGGACAGAAGAGGAAGGAATTCACTATTCACAGCTTTGTCCAAGAAGGAGAGGATGAGAATTAGCCACTGTGACACAGCCAAACAAGCTTGGGATCTACTTCAGGTTACTCATGAGGGAAACAAGAAGGTTAGAGGTCAGAAGCTTCAAAGAAGTACGAAATTGACCCAAATTGAGCAGAATGGATTTCTTAGATCGGCGGTCACTACAATTCAACCATCGATCCCAAATTCCACTAGTGATAATCTTGAATTTGACCGTGACAAGCTTCGCAATCTTTGTCTAAGGAAGCCATTGCTGGGATCTTCGGCGACTCCCTCAACAAACCCACCAAACCATGCGCCATCGCCGTCTCTGTGGTCGGGTTCTGCGTGTTCTGCTGCAGACATCTCCGGCTCCGGTTCGCCTTCACCATGTCCAAAGCCTGCAACGTCTACTGCGCCAATCTCAAAAGCTGCCTCTTCCTCTCCATCGCTCTCCTCCCCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

163

Amino Acids

17.45

Weight (kDa)

10.1

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 2 - 72 4.5e-07 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 434
AciI CCGC 1 cut(s) 200
AclWI GGATC 3 cut(s) 102, 217, 310
AcsI RAATTY 3 cut(s) 19, 229, 251
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 3 cut(s) 149, 215, 251
AhlI ACTAGT 1 cut(s) 236
AluBI AGCT 5 cut(s) 35, 89, 145, 268, 455
AluI AGCT 5 cut(s) 35, 89, 145, 268, 455
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 3 cut(s) 102, 217, 310
ApeKI GCWGC 2 cut(s) 380, 455
ApoI RAATTY 3 cut(s) 19, 229, 251
Asp700I GAANNNNTTC 1 cut(s) 19
AspLEI GCGC 2 cut(s) 343, 442
AsuHPI GGTGA 1 cut(s) 402
BbvI GCAGC 2 cut(s) 367, 442
BccI CCATC 3 cut(s) 226, 352, 478
BceAI ACGGC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 357
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 2 cut(s) 381, 456
BlsI GCNGC 2 cut(s) 382, 457
BmiI GGNNCC 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 221
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 469
BseXI GCAGC 2 cut(s) 367, 442
BseYI CCCAGC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 221
BsiSI CCGG 2 cut(s) 393, 399
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
Bsp143I GATC 4 cut(s) 94, 194, 222, 302
BspACI CCGC 1 cut(s) 200
BspDI ATCGAT 1 cut(s) 221
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 3 cut(s) 102, 217, 310
BsrDI GCAATG 1 cut(s) 293
BssMI GATC 4 cut(s) 94, 194, 222, 302
Bst4CI ACNGT 2 cut(s) 71, 260
Bst6I CTCTTC 2 cut(s) 4, 466
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 191, 284
BstF5I GGATG 1 cut(s) 60
BstHHI GCGC 2 cut(s) 343, 442
BstKTI GATC 4 cut(s) 97, 197, 225, 305
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 4 cut(s) 94, 194, 222, 302
BstMWI GCNNNNNNNGC 2 cut(s) 86, 377
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 367, 442
BstX2I RGATCY 2 cut(s) 94, 302
BstYI RGATCY 2 cut(s) 94, 302
Bsu15I ATCGAT 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 221
BtgZI GCGATG 2 cut(s) 330, 456
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 112
CfoI GCGC 2 cut(s) 343, 442
ClaI ATCGAT 1 cut(s) 221
Csp6I GTAC 1 cut(s) 156
CviAII CATG 3 cut(s) 113, 338, 414
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 191, 284
DpnI GATC 4 cut(s) 96, 196, 224, 304
DpnII GATC 4 cut(s) 94, 194, 222, 302
Eam1104I CTCTTC 2 cut(s) 4, 466
EarI CTCTTC 2 cut(s) 4, 466
Eco57I CTGAAG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 3 cut(s) 116, 341, 417
FaiI YATR 3 cut(s) 114, 339, 415
FatI CATG 3 cut(s) 112, 337, 413
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 381, 456
FokI GGATG 1 cut(s) 67
Fsp4HI GCNGC 2 cut(s) 381, 456
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 342, 441
GluI GCNGC 2 cut(s) 381, 456
GsaI CCCAGC 1 cut(s) 302
HapII CCGG 2 cut(s) 393, 399
HhaI GCGC 2 cut(s) 343, 442
Hin1II CATG 3 cut(s) 116, 341, 417
Hin6I GCGC 2 cut(s) 341, 440
HinP1I GCGC 2 cut(s) 341, 440
HindIII AAGCTT 3 cut(s) 87, 143, 266
HinfI GANTC 1 cut(s) 313
HpaII CCGG 2 cut(s) 393, 399
HphI GGTGA 1 cut(s) 402
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 2 cut(s) 113, 248
Hpy8I GTNNAC 1 cut(s) 435
HpyAV CCTTC 4 cut(s) 9, 40, 121, 417
HpyCH4III ACNGT 2 cut(s) 71, 260
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 2 cut(s) 383, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 377
HpyF3I CTNAG 2 cut(s) 191, 284
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 3 cut(s) 116, 341, 417
HspAI GCGC 2 cut(s) 341, 440
Kzo9I GATC 4 cut(s) 94, 194, 222, 302
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 5 cut(s) 89, 284, 406, 412, 438
Lsp1109I GCAGC 2 cut(s) 367, 442
MaeI CTAG 1 cut(s) 237
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 4 cut(s) 71, 106, 202, 260
MalI GATC 4 cut(s) 96, 196, 224, 304
MboI GATC 4 cut(s) 94, 194, 222, 302
MboII GAAGA 3 cut(s) 21, 297, 453
MflI RGATCY 2 cut(s) 94, 302
MluCI AATT 8 cut(s) 19, 60, 161, 171, 210, 229, 251, 487
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 8 cut(s) 5, 45, 109, 128, 328, 469, 475, 490
MroXI GAANNNNTTC 1 cut(s) 19
MseI TTAA 1 cut(s) 490
MspI CCGG 2 cut(s) 393, 399
MwoI GCNNNNNNNGC 2 cut(s) 86, 377
NdeII GATC 4 cut(s) 94, 194, 222, 302
NlaIII CATG 3 cut(s) 116, 341, 417
NlaIV GGNNCC 1 cut(s) 397
NmuCI GTSAC 3 cut(s) 71, 202, 260
PagI TCATGA 1 cut(s) 112
PcsI WCGNNNNNNNCGW 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 19
PkrI GCNGC 2 cut(s) 382, 457
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 397
PstI CTGCAG 1 cut(s) 385
PsuI RGATCY 2 cut(s) 94, 302
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 2 cut(s) 381, 456
Sau3AI GATC 4 cut(s) 94, 194, 222, 302
SchI GAGTC 1 cut(s) 307
SetI ASST 9 cut(s) 37, 91, 108, 132, 139, 147, 270, 434, 457
SfcI CTRYAG 1 cut(s) 381
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 8 cut(s) 19, 60, 161, 171, 210, 229, 251, 487
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 71, 260
TaiI ACGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 221
TasI AATT 8 cut(s) 19, 60, 161, 171, 210, 229, 251, 487
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TscAI CASTG 1 cut(s) 74
TseFI GTSAC 3 cut(s) 71, 202, 260
TseI GCWGC 2 cut(s) 380, 455
Tsp45I GTSAC 3 cut(s) 71, 202, 260
TspRI CASTG 1 cut(s) 74
XapI RAATTY 3 cut(s) 19, 229, 251
XmiI GTMKAC 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 19
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.