Rh6AG171500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000703
Physical Location & Seq
Forward (+)
27791920 .. 27792234
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG171500.1

Sequence Viewer

Length: 315 bp
ATGGCGCTCCATGGCGGTTCGACGGCGGTCTGGAGATACCGGCGAGGCAGAACACTTGGCAGTCAGGCGGCGATGGCAGTGGTGGGGACGGGCCAGGCTTGGATGGCAGCTTATGGTCTTCCTTCGGAGACCGTACTTTGCCATAAAGCTTGCCTCCCCTTTAACCCGACCGGACTGCGACGTCTTGCTATTGGGCTCCTGCAATGGGCTCCAACTTCCGGTGAACGATGTTTCTCCCAAAAAGAAGACCGGCGAAAGAACCTGTTCAAGTTCGAGCATAGATTTGCAGCCACAATTATGTATTGCTCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.6

Weight (kDa)

10.16

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 180
AatII GACGTC 1 cut(s) 184
AciI CCGC 3 cut(s) 15, 26, 68
AcyI GRCGYC 1 cut(s) 181
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 205, 218
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 2 cut(s) 110, 149
AluI AGCT 2 cut(s) 110, 149
Alw26I GTCTC 1 cut(s) 122
AoxI GGCC 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 107, 287
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 233
BanII GRGCYC 2 cut(s) 198, 211
BbsI GAAGAC 2 cut(s) 110, 252
BbvI GCAGC 2 cut(s) 119, 299
BccI CCATC 2 cut(s) 67, 97
BceAI ACGGC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 95
BcoDI GTCTC 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 3 cut(s) 69, 108, 288
BlsI GCNGC 3 cut(s) 70, 109, 289
Bme1390I CCNGG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 197, 210
BmrFI CCNGG 1 cut(s) 95
BoxI GACNNNNGTC 1 cut(s) 26
BpiI GAAGAC 2 cut(s) 110, 252
BpmI CTGGAG 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 2 cut(s) 170, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 218
Bse118I RCCGGY 2 cut(s) 39, 249
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 205, 218
BseMI GCAATG 1 cut(s) 209
BseXI GCAGC 2 cut(s) 119, 299
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 171
BsiSI CCGG 4 cut(s) 40, 171, 219, 250
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 205, 218
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 198, 211
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 3 cut(s) 15, 26, 68
BspANI GGCC 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 197, 210
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 209
BsrFI RCCGGY 2 cut(s) 39, 249
BssAI RCCGGY 2 cut(s) 39, 249
BssECI CCNNGG 1 cut(s) 10
BssNI GRCGYC 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 122
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 74, 104
BstNI CCWGG 1 cut(s) 95
BstPAI GACNNNNGTC 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 119, 299
BstV2I GAAGAC 2 cut(s) 110, 252
BsuRI GGCC 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 2 cut(s) 39, 249
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 1 cut(s) 134
CviAII CATG 1 cut(s) 11
CviJI RGCY 7 cut(s) 93, 98, 110, 149, 196, 209, 290
CviKI_1 RGCY 7 cut(s) 93, 98, 110, 149, 196, 209, 290
CviQI GTAC 1 cut(s) 134
DrdI GACNNNNNNGTC 1 cut(s) 180
DseDI GACNNNNNNGTC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 2 cut(s) 198, 211
Eco31I GGTCTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 2 cut(s) 198, 211
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 14
FaiI YATR 5 cut(s) 12, 114, 144, 279, 299
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 69, 108, 288
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 2 cut(s) 198, 211
Fsp4HI GCNGC 3 cut(s) 69, 108, 288
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 69, 108, 288
GsuI CTGGAG 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 93
HapII CCGG 4 cut(s) 40, 171, 219, 250
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 147
HpaII CCGG 4 cut(s) 40, 171, 219, 250
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 2 cut(s) 25, 183
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 202, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 104
HpySE526I ACGT 1 cut(s) 181
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 3 cut(s) 12, 201, 214
Lsp1109I GCAGC 2 cut(s) 119, 299
MaeII ACGT 1 cut(s) 181
MboII GAAGA 2 cut(s) 110, 257
MhlI GDGCHC 2 cut(s) 198, 211
MluCI AATT 1 cut(s) 294
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 2 cut(s) 38, 164
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 4 cut(s) 40, 171, 219, 250
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 74, 104
NcoI CCATGG 1 cut(s) 10
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 2 cut(s) 197, 210
PdmI GAANNNNTTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 70, 109, 289
PshAI GACNNNNGTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 2 cut(s) 197, 210
PspPI GGNCC 1 cut(s) 91
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 69, 108, 288
Sau96I GGNCC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 198, 211
SetI ASST 4 cut(s) 112, 151, 184, 264
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 1 cut(s) 294
SsiI CCGC 3 cut(s) 15, 26, 68
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 184
TaqI TCGA 3 cut(s) 20, 273, 308
TasI AATT 1 cut(s) 294
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 84
TseI GCWGC 2 cut(s) 107, 287
TspRI CASTG 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 263
ZraI GACGTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.