Rmu_sc0001156.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001156.1
Physical Location & Seq
Reverse (-)
2 .. 409
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001156.1_g000001.1.cds

Sequence Viewer

Length: 408 bp
atgtcttcaacttggaagagtgaaaagacagagtatctcaacagaatcaaaatactagaactggaagttaaaggacaacaagtattgaacttggaattattagctaaagttgagatcttgcaagatgagttacgatcaactcaagaaaagttcaacaagttcgatgttagctctagttccatgtccaagttgcttggatcaggaaaagctcctcatgacacttctggattagggtacaatggagaaagttccaagagcactaagttcgtaagagcatcgagatcatctgttgaaaagaaagaagcttccatggataatcaagtcacctttatgaagaaacggagggaagatcaaccaccaccaaactatcaggtaatgcttgaccaagaatccaccactggtcgaaac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.42

Weight (kDa)

9.1

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 205
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 4 cut(s) 9, 88, 154, 293
AluBI AGCT 4 cut(s) 104, 171, 209, 305
AluI AGCT 4 cut(s) 104, 171, 209, 305
Alw21I GWGCWC 1 cut(s) 260
AlwI GGATC 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 260
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BfaI CTAG 2 cut(s) 56, 174
BglII AGATCT 1 cut(s) 114
BmsI GCATC 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 309
Bse1I ACTGG 2 cut(s) 66, 403
BseDI CCNNGG 1 cut(s) 309
BseNI ACTGG 2 cut(s) 66, 403
BseRI GAGGAG 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 5 cut(s) 114, 134, 197, 281, 349
Bsp19I CCATGG 1 cut(s) 309
BspHI TCATGA 1 cut(s) 214
BspPI GGATC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 66, 403
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 5 cut(s) 114, 134, 197, 281, 349
BssT1I CCWWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 309
BstKTI GATC 5 cut(s) 117, 137, 200, 284, 352
BstMBI GATC 5 cut(s) 114, 134, 197, 281, 349
BstX2I RGATCY 1 cut(s) 114
BstYI RGATCY 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 396
CciI TCATGA 1 cut(s) 214
Csp6I GTAC 1 cut(s) 235
CviAII CATG 3 cut(s) 181, 215, 310
CviJI RGCY 4 cut(s) 104, 171, 209, 305
CviKI_1 RGCY 4 cut(s) 104, 171, 209, 305
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 261
DpnI GATC 5 cut(s) 116, 136, 199, 283, 351
DpnII GATC 5 cut(s) 114, 134, 197, 281, 349
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 3 cut(s) 184, 218, 313
FaiI YATR 4 cut(s) 182, 216, 311, 332
FatI CATG 3 cut(s) 180, 214, 309
FspBI CTAG 2 cut(s) 56, 174
Hin1II CATG 3 cut(s) 184, 218, 313
HindIII AAGCTT 1 cut(s) 303
HinfI GANTC 2 cut(s) 45, 389
HphI GGTGA 1 cut(s) 316
Hpy188III TCNNGA 5 cut(s) 143, 201, 215, 225, 279
HpyCH4V TGCA 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 3 cut(s) 184, 218, 313
Kzo9I GATC 5 cut(s) 114, 134, 197, 281, 349
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 5 cut(s) 47, 186, 210, 356, 384
LweI GCATC 1 cut(s) 284
MaeI CTAG 2 cut(s) 56, 174
MaeIII GTNAC 2 cut(s) 129, 322
MalI GATC 5 cut(s) 116, 136, 199, 283, 351
MboI GATC 5 cut(s) 114, 134, 197, 281, 349
MboII GAAGA 3 cut(s) 28, 346, 359
MflI RGATCY 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 1 cut(s) 95
MnlI CCTC 2 cut(s) 222, 336
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 309
NdeII GATC 5 cut(s) 114, 134, 197, 281, 349
NlaIII CATG 3 cut(s) 184, 218, 313
NmuCI GTSAC 1 cut(s) 322
PagI TCATGA 1 cut(s) 214
PfeI GAWTC 2 cut(s) 45, 389
PsuI RGATCY 1 cut(s) 114
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 1 cut(s) 69
Sau3AI GATC 5 cut(s) 114, 134, 197, 281, 349
SduI GDGCHC 1 cut(s) 260
SetI ASST 6 cut(s) 106, 173, 211, 307, 329, 375
SfaNI GCATC 1 cut(s) 284
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 1 cut(s) 95
SspMI CTAG 2 cut(s) 56, 174
StyI CCWWGG 1 cut(s) 309
TaqI TCGA 3 cut(s) 162, 278, 403
TasI AATT 1 cut(s) 95
TfiI GAWTC 2 cut(s) 45, 389
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 355
TspRI CASTG 1 cut(s) 403
XspI CTAG 2 cut(s) 56, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.