FvH4_3g35772

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000703
Physical Location & Seq
Reverse (-)
30698658 .. 30707630
8973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35772.t1

Sequence Viewer

Length: 2952 bp
ATGGCGTTGGCATTGGCTGCAGAAGGCAAACCTCTAGCCATTGGTATCGATCTCGGAACAACATATTCATGCGTTGGTGTATGGCGAAACGATCACGTTGAGATTATACCCAATGAGCAGGGGAACAGGACAACGCCATCCTACGTTGCTTTTACAGACACTAGGCGTTTGATTGGTGATGCCGCCAAAAACCAGGCCTCCATGAACCCCATAAACACTGTTTTCGATATAGTGAAGCTGTCTTCGAAAGAAGCCGTCAGAGGGATACCAAAGCTTGCCGGTATCCCCCAAGGTATGTGTGGTGAATGTAAAGTTGGTAAGATGACTCGGACCTCTCATCCTTTATTAAATGCTGATCCTACTACTCATGTTCTTGAACTGCTGCATCTAGACTTAGTAGGACCTGTTGAAACTAAAAGTATTGGAGGAAGAAAGTATGCTCTTGTAATTGTTGATGATTTTTCTAGATTCACTTGGGTGAGATTTTTGTCTAACAAAGGTGAAACTTTTGAAAATTATTACAGTGTTGCTAAGAGAGTCACAAATGAGAAATTGAATGATGACATGCATATTGTTAGGATCAGATCAGATCATGGTACTGAATTCGAAAACTCTTATTTTGAAAATTATTGTGAAGAGTTTGGTGTGCATCATGAATTCTCTGCTCCTATCACTCCACAGCATAATGGCATTGTAGAAAGAAAGAATAGGGTTCTTGTGGAATTATCTAGGGTTATGCTAGCTGCATCTGGTCTTGATCATTCTTTTTGGGCAGAAGCAGTAAACAATGCTTGTTACACATTAAACCGTGTAATTCTTAGACCTGGAACAACCATGACTCCCTATGAGATCTGGAGAGGTAGAAAACCAAATATCTCTCATCTCAAAGTGTTTGGAAGTCCCTGCTTTATCTATAGGGACAGAGAGTATTTGACAAAGTTTGATGCTAAAAGTGACAAGGGTGTGTTCCTCGGCTATGCTGGAAATAGTCGAGCCTATCGGGTGTATAACAAGAGAACTTGCAAAATTATGGAATCAGTAAATGTGGCTGTTAATGATGCTCTTGTTTGCAAGAATGATGGGTGTGTTTTGTCTGAGCAGGTATCTGAACAAGAAGCTAAACCTACCTCATCCAAAACCAAGTCTGATCAAGGATATAATGACTCAGGGATGGATGATGACACAGATCTTCCAGGATCTGGGAAAGATGCCACGCTTGCCGTTCAGCCAATTCACAGAAGCGGCAAAAGACAAGTACAGAAGGACCATGATCTATCCCATGTAATTGGGGATGTGTCTGAAGCCAGAAAGACCAGGAGTAAGACTGGTCGGTTGGTGAGCAATTTCTCGGTGTTTAAATGCTTTGTCGCTATACATAAAGATGACATCAACACCATCACATACTATGGCTTTGTTTCTATAGTAGAGCCAAAGAATGTGAAGGAAGCCTTGCTTGATGCTGATTGGATCAGTGCCATGCAAGACGAGTTGAACCAGTTTGAAAGAAGCAATGTTTGGCATTTAGTGTCTAGGCCTAAGGACAAAAATGTCATAGGAACCAAATGGGTGTTCAAAAATAAAACTGATGAAAAGGGCATTATCACCCGAAACAAGGCAAGACTTTTTGTGCAAGGATATTCTCAAATAGAAGGTTTAGATTTTGATGAGACATTCGCTCCTGTAGCTAGACTTGAGTCAGTTCGTCTTCTACTTGCTGTTGCTTGCTATTTGAAATTTACCTTATATCAAATAGATGTGAAAAGTGCTTTTCTGAATGGTATCCTCAAAGAGGAAGTGTATGTGGAACAACCCCCAGGATTCCAGAGTCTTACCCATCCTGACTGTGTCTATAGGTTAGATAAGACCCTCTACGGTCTTAAGCAAGCCCCTAGGGCTTGGTATGAGAGATTGTCGAATCACCTTGTTGACCATGGATATGTGCGAGGCTCAGTTGACAAAACAATGTTTGTCAAATGTACCTCAGAGCACATTATCATTGCTCAGATATATGTTGATGACATAGTGTTTGGGTCTACTTCTCCATCCCTGGTGCATGAGTTTACTGAGCTCATGAAGAAAGAATTTGAAATAAGTCTATGTGGGAAGTTAAGCTACTTCTTAGGTCTTCAAGTTGTGCAAAGTCAAAATGGTATGTTTATCTGTCAATCTAAGTATGCACAGGACCTTGTCAAGAAGTTTGGGATGGAAACGGCCACTGCCTTCCCCACTCCCATGAGCACCAGTTGTAAAATCAGTGCTGACATGTCTGGTATTAATGTGAACCAAACCAATTATAGGAGTATGATTGGAAGTCTTATGTATTTGACTGCTAGTAGACCAGATATTGCTTATAGTGTTGGTGTATGTGCTCGTTATCAAGCTAATCCCAAACAATCTCATGTCAAAGCAGTAAAGCGCATAATCCGATATGTTGCTGGAACTCTGGATCATGGAATTAAGTACACTTTCGACACTAATGTTGAGATTGCAGGATACACTGACTCGGACTGGGCTAGAGATGCAAATGACAGAAAAAGCACTTCCGGTGGCTGCTTCTTTGTAGGCAACAATCTTGTTTCATGGCATAGCAAGAAGCAAAATTGTACCTCCCTCTCTACTGCTCAAGCTGAGTATGTAGCAGCTGGTAGTTGTTGCACACAACTCATGTGGATGAAGCAGATGCTTGCAGACTATGGTTTCCAGCAAGGTACGTTATCTCTATTCTGTGATAATACCTCTGCCATAAACATCTCAAAGAATCTAGTGTTGCATTCTAGGACCAAGCATATAGAGATAAGATATCACTTCATTCGTGGCTTGGTTGAAGAGAAACTGCTTGAGCTTACTTTCATTCCAACTGAAAAGCAATTAGCTGATTTGTTCACTAAACCACTTGACAATGCTAGGCATTTGAGTTTGTGCAAGGCCATAGGATTGTGTGACAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

984

Amino Acids

110.46

Weight (kDa)

8.5

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 13 - 80 5.5e-26 Hsp70 protein
rve PF00665 124 - 226 2.3e-11 Integrase core domain
SH3_retrovirus PF25597 300 - 353 3.6e-14 Retroviral polymerase SH3-like domain
RVT_2 PF07727 504 - 745 4.3e-76 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1547
Acc36I ACCTGC 1 cut(s) 1090
AccB7I CCANNNNNTGG 1 cut(s) 1199
AccI GTMKAC 2 cut(s) 2033, 2335
AciI CCGC 2 cut(s) 183, 1242
AclWI GGATC 5 cut(s) 350, 587, 1204, 1475, 2454
AcoI YGGCCR 1 cut(s) 2211
AcsI RAATTY 4 cut(s) 602, 656, 1733, 2081
AcuI CTGAAG 1 cut(s) 1320
AfaI GTAC 6 cut(s) 598, 1257, 1978, 2462, 2605, 2710
AfiI CCNNNNNNNGG 5 cut(s) 261, 1199, 1612, 1789, 2295
AflII CTTAAG 1 cut(s) 1877
AflIII ACRYGT 1 cut(s) 2262
AjnI CCWGG 6 cut(s) 192, 823, 1192, 1313, 1813, 2046
AjuI GAANNNNNNNTTGG 6 cut(s) 297, 329, 1498, 1530, 1553, 1585
AleI CACNNNNGTG 1 cut(s) 476
Alw21I GWGCWC 4 cut(s) 1989, 2070, 2240, 2371
Alw26I GTCTC 1 cut(s) 1661
AlwI GGATC 5 cut(s) 350, 587, 1204, 1475, 2454
AlwNI CAGNNNCTG 1 cut(s) 1199
AoxI GGCC 4 cut(s) 195, 1532, 2211, 2925
ApeKI GCWGC 5 cut(s) 17, 382, 743, 2550, 2639
ApoI RAATTY 4 cut(s) 602, 656, 1733, 2081
ArsI GACNNNNNNTTYG 2 cut(s) 2009, 2041
AseI ATTAAT 1 cut(s) 2274
AspA2I CCTAGG 1 cut(s) 1889
AspLEI GCGC 1 cut(s) 2418
AspS9I GGNCC 5 cut(s) 330, 401, 1264, 2182, 2778
AsuHPI GGTGA 7 cut(s) 188, 314, 490, 512, 1348, 1594, 1910
AsuII TTCGAA 2 cut(s) 245, 606
AsuNHI GCTAGC 1 cut(s) 739
AvaII GGWCC 5 cut(s) 330, 401, 1264, 2182, 2778
AvrII CCTAGG 1 cut(s) 1889
AxyI CCTNAGG 1 cut(s) 1536
BanII GRGCYC 1 cut(s) 2070
BarI GAAGNNNNNNTAC 2 cut(s) 2096, 2128
BbsI GAAGAC 3 cut(s) 234, 1697, 2117
Bbv12I GWGCWC 4 cut(s) 1989, 2070, 2240, 2371
BbvI GCAGC 5 cut(s) 4, 369, 730, 2537, 2651
BccI CCATC 7 cut(s) 145, 1073, 1165, 1403, 1842, 2050, 2197
BceAI ACGGC 3 cut(s) 239, 1205, 2226
BciT130I CCWGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
BciVI GTATCC 4 cut(s) 258, 293, 1790, 2486
BclI TGATCA 2 cut(s) 757, 1147
BcoDI GTCTC 1 cut(s) 1661
BfmI CTRYAG 5 cut(s) 18, 913, 1419, 1680, 1849
BfrI CTTAAG 1 cut(s) 1877
BfuAI ACCTGC 1 cut(s) 1090
BfuI GTATCC 4 cut(s) 258, 293, 1790, 2486
BglI GCCNNNNNGGC 1 cut(s) 1892
BglII AGATCT 2 cut(s) 849, 1186
BisI GCNGC 7 cut(s) 18, 183, 383, 744, 1243, 2551, 2640
BlnI CCTAGG 1 cut(s) 1889
BlsI GCNGC 7 cut(s) 19, 184, 384, 745, 1244, 2552, 2641
Bme1390I CCNGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
Bme18I GGWCC 5 cut(s) 330, 401, 1264, 2182, 2778
BmgT120I GGNCC 5 cut(s) 330, 401, 1264, 2182, 2778
BmiI GGNNCC 1 cut(s) 1558
BmrFI CCNGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
BmrI ACTGGG 1 cut(s) 2518
BmtI GCTAGC 1 cut(s) 743
BmuI ACTGGG 1 cut(s) 2518
BoxI GACNNNNGTC 1 cut(s) 1693
BpiI GAAGAC 3 cut(s) 234, 1697, 2117
BpmI CTGGAG 1 cut(s) 874
Bpu14I TTCGAA 2 cut(s) 245, 606
BpuEI CTTGAG 3 cut(s) 1712, 2607, 2858
Bsa29I ATCGAT 1 cut(s) 48
BsaJI CCNNGG 6 cut(s) 289, 970, 1813, 1889, 1930, 2046
BsaWI WCCGGW 1 cut(s) 2543
BsaXI ACNNNNNCTCC 6 cut(s) 182, 212, 823, 853, 1660, 1690
Bsc4I CCNNNNNNNGG 5 cut(s) 261, 1199, 1612, 1789, 2295
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 4 cut(s) 1330, 1495, 2241, 2513
Bse21I CCTNAGG 1 cut(s) 1536
Bse3DI GCAATG 2 cut(s) 1516, 1995
BseBI CCWGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 6 cut(s) 289, 970, 1813, 1889, 1930, 2046
BseLI CCNNNNNNNGG 5 cut(s) 261, 1199, 1612, 1789, 2295
BseMI GCAATG 2 cut(s) 1516, 1995
BseMII CTCAG 7 cut(s) 1086, 1179, 1962, 1995, 2015, 2055, 2619
BseNI ACTGG 4 cut(s) 1330, 1495, 2241, 2513
BseXI GCAGC 5 cut(s) 4, 369, 730, 2537, 2651
BshFI GGCC 4 cut(s) 197, 1534, 2213, 2927
BshVI ATCGAT 1 cut(s) 48
BsiHKAI GWGCWC 4 cut(s) 1989, 2070, 2240, 2371
BsiSI CCGG 2 cut(s) 279, 2544
BslFI GGGAC 2 cut(s) 885, 932
BslI CCNNNNNNNGG 5 cut(s) 261, 1199, 1612, 1789, 2295
BsmAI GTCTC 1 cut(s) 1661
BsmFI GGGAC 2 cut(s) 885, 932
BsmI GAATGC 1 cut(s) 2770
BsnI GGCC 4 cut(s) 197, 1534, 2213, 2927
Bsp119I TTCGAA 2 cut(s) 245, 606
Bsp1286I GDGCHC 4 cut(s) 1989, 2070, 2240, 2371
Bsp19I CCATGG 1 cut(s) 1930
BspACI CCGC 2 cut(s) 183, 1242
BspANI GGCC 4 cut(s) 197, 1534, 2213, 2927
BspCNI CTCAG 7 cut(s) 1087, 1178, 1961, 1994, 2014, 2056, 2620
BspDI ATCGAT 1 cut(s) 48
BspHI TCATGA 2 cut(s) 652, 2070
BspLI GGNNCC 1 cut(s) 1558
BspMAI CTGCAG 1 cut(s) 22
BspMI ACCTGC 1 cut(s) 1090
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 5 cut(s) 350, 587, 1204, 1475, 2454
BspT104I TTCGAA 2 cut(s) 245, 606
BspTI CTTAAG 1 cut(s) 1877
BsrDI GCAATG 2 cut(s) 1516, 1995
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 4 cut(s) 1330, 1495, 2241, 2513
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 6 cut(s) 289, 970, 1813, 1889, 1930, 2046
BssT1I CCWWGG 3 cut(s) 289, 1889, 1930
Bst2UI CCWGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
Bst4CI ACNGT 5 cut(s) 220, 524, 809, 1844, 1874
Bst6I CTCTTC 2 cut(s) 630, 2820
BstAFI CTTAAG 1 cut(s) 1877
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBI TTCGAA 2 cut(s) 245, 606
BstC8I GCNNGC 6 cut(s) 276, 741, 1218, 1723, 1884, 2685
BstDSI CCRYGG 1 cut(s) 1930
BstENI CCTNNNNNAGG 1 cut(s) 1787
BstHHI GCGC 1 cut(s) 2418
BstMAI GTCTC 1 cut(s) 1661
BstMWI GCNNNNNNNGC 5 cut(s) 17, 1217, 1682, 1892, 2519
BstNI CCWGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
BstNSI RCATGY 2 cut(s) 568, 2266
BstPAI GACNNNNGTC 1 cut(s) 1693
BstSCI CCNGG 6 cut(s) 192, 823, 1192, 1313, 1813, 2046
BstSFI CTRYAG 5 cut(s) 18, 913, 1419, 1680, 1849
BstV1I GCAGC 5 cut(s) 4, 369, 730, 2537, 2651
BstV2I GAAGAC 3 cut(s) 234, 1697, 2117
BstX2I RGATCY 3 cut(s) 849, 1186, 1196
BstXI CCANNNNNNTGG 1 cut(s) 1286
BstYI RGATCY 3 cut(s) 849, 1186, 1196
Bsu15I ATCGAT 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 1536
BsuI GTATCC 4 cut(s) 258, 293, 1790, 2486
BsuRI GGCC 4 cut(s) 197, 1534, 2213, 2927
BsuTUI ATCGAT 1 cut(s) 48
BtgI CCRYGG 1 cut(s) 1930
BtsI GCAGTG 1 cut(s) 2214
BtsIMutI CAGTG 6 cut(s) 216, 529, 1477, 2214, 2260, 2496
BveI ACCTGC 1 cut(s) 1090
Cac8I GCNNGC 6 cut(s) 276, 741, 1218, 1723, 1884, 2685
CaiI CAGNNNCTG 1 cut(s) 1199
CciI TCATGA 2 cut(s) 652, 2070
CfoI GCGC 1 cut(s) 2418
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 5 cut(s) 330, 401, 1264, 2182, 2778
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 6 cut(s) 597, 1256, 1977, 2461, 2604, 2709
CspCI CAANNNNNGTGG 2 cut(s) 2648, 2683
CviQI GTAC 6 cut(s) 597, 1256, 1977, 2461, 2604, 2709
DraI TTTAAA 1 cut(s) 1357
DrdI GACNNNNNNGTC 1 cut(s) 1547
DseDI GACNNNNNNGTC 1 cut(s) 1547
EaeI YGGCCR 1 cut(s) 2211
Eam1104I CTCTTC 2 cut(s) 630, 2820
EarI CTCTTC 2 cut(s) 630, 2820
Ecl136II GAGCTC 1 cut(s) 2068
Eco130I CCWWGG 3 cut(s) 289, 1889, 1930
Eco147I AGGCCT 2 cut(s) 197, 1534
Eco24I GRGCYC 1 cut(s) 2070
Eco32I GATATC 1 cut(s) 2801
Eco47I GGWCC 5 cut(s) 330, 401, 1264, 2182, 2778
Eco53kI GAGCTC 1 cut(s) 2068
Eco57I CTGAAG 1 cut(s) 1320
Eco81I CCTNAGG 1 cut(s) 1536
EcoICRI GAGCTC 1 cut(s) 2068
EcoNI CCTNNNNNAGG 1 cut(s) 1787
EcoO109I RGGNCCY 2 cut(s) 401, 2182
EcoRI GAATTC 2 cut(s) 602, 656
EcoRII CCWGG 6 cut(s) 192, 823, 1192, 1313, 1813, 2046
EcoRV GATATC 1 cut(s) 2801
EcoT14I CCWWGG 3 cut(s) 289, 1889, 1930
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 2070
ErhI CCWWGG 3 cut(s) 289, 1889, 1930
FalI AAGNNNNNCTT 4 cut(s) 1433, 1465, 1437, 1469
FaqI GGGAC 2 cut(s) 885, 932
FbaI TGATCA 2 cut(s) 757, 1147
FblI GTMKAC 2 cut(s) 2033, 2335
Fnu4HI GCNGC 7 cut(s) 18, 183, 383, 744, 1243, 2551, 2640
FriOI GRGCYC 1 cut(s) 2070
Fsp4HI GCNGC 7 cut(s) 18, 183, 383, 744, 1243, 2551, 2640
GlaI GCGC 1 cut(s) 2417
GluI GCNGC 7 cut(s) 18, 183, 383, 744, 1243, 2551, 2640
GsuI CTGGAG 1 cut(s) 874
HaeIII GGCC 4 cut(s) 197, 1534, 2213, 2927
HapII CCGG 2 cut(s) 279, 2544
HhaI GCGC 1 cut(s) 2418
Hin6I GCGC 1 cut(s) 2416
HinP1I GCGC 1 cut(s) 2416
HincII GTYRAC 2 cut(s) 1927, 1954
HindII GTYRAC 2 cut(s) 1927, 1954
HindIII AAGCTT 1 cut(s) 272
HpaII CCGG 2 cut(s) 279, 2544
HphI GGTGA 7 cut(s) 188, 314, 490, 512, 1348, 1594, 1910
Hpy166II GTNNAC 9 cut(s) 784, 1927, 1954, 2034, 2061, 2281, 2336, 2463, 2883
Hpy8I GTNNAC 9 cut(s) 784, 1927, 1954, 2034, 2061, 2281, 2336, 2463, 2883
HpyAV CCTTC 5 cut(s) 17, 1255, 1435, 1643, 2230
HpyCH4III ACNGT 5 cut(s) 220, 524, 809, 1844, 1874
HpyCH4IV ACGT 3 cut(s) 96, 144, 2711
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 1217, 1682, 1892, 2519
HpySE526I ACGT 3 cut(s) 96, 144, 2711
HspAI GCGC 1 cut(s) 2416
Ksp22I TGATCA 2 cut(s) 757, 1147
LmnI GCTCC 2 cut(s) 670, 1681
Lsp1109I GCAGC 5 cut(s) 4, 369, 730, 2537, 2651
MaeII ACGT 3 cut(s) 96, 144, 2711
MaeIII GTNAC 4 cut(s) 538, 794, 953, 2939
MboII GAAGA 8 cut(s) 234, 441, 647, 1181, 1697, 2086, 2117, 2837
MflI RGATCY 3 cut(s) 849, 1186, 1196
MhlI GDGCHC 4 cut(s) 1989, 2070, 2240, 2371
MlyI GAGTC 7 cut(s) 319, 546, 832, 1157, 1703, 1834, 2495
MmeI TCCRAC 1 cut(s) 2879
Mph1103I ATGCAT 1 cut(s) 570
MseI TTAA 8 cut(s) 347, 803, 1053, 1356, 1878, 2108, 2274, 2457
MslI CAYNNNNRTG 6 cut(s) 67, 476, 1380, 1935, 2231, 2669
MspA1I CMGCKG 1 cut(s) 2642
MspCI CTTAAG 1 cut(s) 1877
MspI CCGG 2 cut(s) 279, 2544
MspR9I CCNGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
Mva1269I GAATGC 1 cut(s) 2770
MvaI CCWGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
MwoI GCNNNNNNNGC 5 cut(s) 17, 1217, 1682, 1892, 2519
NcoI CCATGG 1 cut(s) 1930
NheI GCTAGC 1 cut(s) 739
NlaIV GGNNCC 1 cut(s) 1558
NmeAIII GCCGAG 1 cut(s) 951
NmuCI GTSAC 3 cut(s) 538, 953, 2939
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 568, 2266
NspV TTCGAA 2 cut(s) 245, 606
OliI CACNNNNGTG 1 cut(s) 476
PagI TCATGA 2 cut(s) 652, 2070
PceI AGGCCT 2 cut(s) 197, 1534
PciI ACATGT 1 cut(s) 2262
PctI GAATGC 1 cut(s) 2770
PfeI GAWTC 5 cut(s) 468, 1034, 1818, 1915, 2758
PflFI GACNNNGTC 2 cut(s) 1844, 2186
PflMI CCANNNNNTGG 1 cut(s) 1199
PfoI TCCNGGA 1 cut(s) 1192
PkrI GCNGC 7 cut(s) 19, 184, 384, 745, 1244, 2552, 2641
PleI GAGTC 7 cut(s) 319, 545, 832, 1157, 1702, 1833, 2495
PpsI GAGTC 7 cut(s) 319, 545, 832, 1157, 1702, 1833, 2495
PpuMI RGGWCCY 2 cut(s) 401, 2182
PscI ACATGT 1 cut(s) 2262
PshAI GACNNNNGTC 1 cut(s) 1693
PshBI ATTAAT 1 cut(s) 2274
Psp124BI GAGCTC 1 cut(s) 2070
Psp5II RGGWCCY 2 cut(s) 401, 2182
Psp6I CCWGG 6 cut(s) 192, 823, 1192, 1313, 1813, 2046
PspGI CCWGG 6 cut(s) 192, 823, 1192, 1313, 1813, 2046
PspN4I GGNNCC 1 cut(s) 1558
PspPI GGNCC 5 cut(s) 330, 401, 1264, 2182, 2778
PspPPI RGGWCCY 2 cut(s) 401, 2182
PstI CTGCAG 1 cut(s) 22
PstNI CAGNNNCTG 1 cut(s) 1199
PsuI RGATCY 3 cut(s) 849, 1186, 1196
PsyI GACNNNGTC 2 cut(s) 1844, 2186
PvuII CAGCTG 1 cut(s) 2642
RsaI GTAC 6 cut(s) 598, 1257, 1978, 2462, 2605, 2710
RsaNI GTAC 6 cut(s) 597, 1256, 1977, 2461, 2604, 2709
RseI CAYNNNNRTG 6 cut(s) 67, 476, 1380, 1935, 2231, 2669
SacI GAGCTC 1 cut(s) 2070
SaqAI TTAA 8 cut(s) 347, 803, 1053, 1356, 1878, 2108, 2274, 2457
SatI GCNGC 7 cut(s) 18, 183, 383, 744, 1243, 2551, 2640
Sau96I GGNCC 5 cut(s) 330, 401, 1264, 2182, 2778
SchI GAGTC 7 cut(s) 319, 546, 832, 1157, 1703, 1834, 2495
ScrFI CCNGG 6 cut(s) 194, 825, 1194, 1315, 1815, 2048
SduI GDGCHC 4 cut(s) 1989, 2070, 2240, 2371
SfcI CTRYAG 5 cut(s) 18, 913, 1419, 1680, 1849
SfuI TTCGAA 2 cut(s) 245, 606
SinI GGWCC 5 cut(s) 330, 401, 1264, 2182, 2778
SmiMI CAYNNNNRTG 6 cut(s) 67, 476, 1380, 1935, 2231, 2669
SmlI CTYRAG 4 cut(s) 1691, 1877, 2622, 2837
SmoI CTYRAG 4 cut(s) 1691, 1877, 2622, 2837
SseBI AGGCCT 2 cut(s) 197, 1534
SsiI CCGC 2 cut(s) 183, 1242
SstI GAGCTC 1 cut(s) 2070
StuI AGGCCT 2 cut(s) 197, 1534
StyD4I CCNGG 6 cut(s) 192, 823, 1192, 1313, 1813, 2046
StyI CCWWGG 3 cut(s) 289, 1889, 1930
TaaI ACNGT 5 cut(s) 220, 524, 809, 1844, 1874
TaiI ACGT 3 cut(s) 99, 147, 2714
TaqI TCGA 7 cut(s) 48, 225, 245, 606, 991, 1913, 2469
TatI WGTACW 2 cut(s) 1255, 2460
TauI GCSGC 2 cut(s) 185, 1245
TfiI GAWTC 5 cut(s) 468, 1034, 1818, 1915, 2758
Tru1I TTAA 8 cut(s) 347, 803, 1053, 1356, 1878, 2108, 2274, 2457
Tru9I TTAA 8 cut(s) 347, 803, 1053, 1356, 1878, 2108, 2274, 2457
TscAI CASTG 6 cut(s) 223, 529, 1477, 2221, 2260, 2503
TseFI GTSAC 3 cut(s) 538, 953, 2939
TseI GCWGC 5 cut(s) 17, 382, 743, 2550, 2639
Tsp45I GTSAC 3 cut(s) 538, 953, 2939
TspDTI ATGAA 9 cut(s) 57, 218, 669, 1602, 2087, 2568, 2687, 2797, 2839
TspRI CASTG 6 cut(s) 223, 529, 1477, 2221, 2260, 2503
Tth111I GACNNNGTC 2 cut(s) 1844, 2186
Van91I CCANNNNNTGG 1 cut(s) 1199
Vha464I CTTAAG 1 cut(s) 1877
VpaK11BI GGWCC 5 cut(s) 330, 401, 1264, 2182, 2778
VspI ATTAAT 1 cut(s) 2274
XagI CCTNNNNNAGG 1 cut(s) 1787
XapI RAATTY 4 cut(s) 602, 656, 1733, 2081
XbaI TCTAGA 2 cut(s) 388, 464
XceI RCATGY 2 cut(s) 568, 2266
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XmaJI CCTAGG 1 cut(s) 1889
XmiI GTMKAC 2 cut(s) 2033, 2335
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.