Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Reverse (-)

10674161 .. 10674647

Gene Structure 487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16931.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTATTGCACTCCACTTCACATATATTCTGCAAATCTTCAAAAAGAGCCTCAGAAACAGCAAGACTTCGTCGGAAGTAATGGGACCGACAGCCTCTCTGGCGACATCAATCGAGTTTCGGCCCTCTGCCGCGTGTGGACCCAATCATCATCTTCGTCGACGAGCCAACCTCCGACCCCCGAAATTGACTCCGCTTCCAGCCTTGACATGTTCAGAGAGAGACCTTTCCGGGGATCCTATACTCGACGGCGACGAGACGAGGTGGTTGAGACAGCGGTGGTGGAGGTAGGAGAAACCAGACTCGCAGAAGAAGCTTTCGGCGTGAAGGTAGATGAAGATGGCAAGCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.05

Weight (kDa)

4.99

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	130, 192, 275
AclWI	GGATC	2 cut(s)	228, 241
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	41
AluBI	AGCT	2 cut(s)	314, 346
AluI	AGCT	2 cut(s)	314, 346
Alw26I	GTCTC	3 cut(s)	214, 249, 263
AlwI	GGATC	2 cut(s)	228, 241
AoxI	GGCC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	84, 121, 138
AsuC2I	CCSGG	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	84, 138
BamHI	GGATCC	1 cut(s)	233
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	3 cut(s)	214, 249, 263
BglI	GCCNNNNNGGC	1 cut(s)	99
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	2 cut(s)	84, 138
BmgT120I	GGNCC	3 cut(s)	84, 121, 138
BmiI	GGNNCC	3 cut(s)	85, 140, 235
BmrFI	CCNGG	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	154, 186
BpuMI	CCSGG	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	229
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	3 cut(s)	214, 249, 263
BsmBI	CGTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	214
Bsp143I	GATC	1 cut(s)	233
BspACI	CCGC	3 cut(s)	130, 192, 275
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	85, 140, 235
BspPI	GGATC	2 cut(s)	228, 241
BspTNI	GGTCTC	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	236
BstMAI	GTCTC	3 cut(s)	214, 249, 263
BstMBI	GATC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 311
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	84, 121, 138
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	7 cut(s)	49, 93, 122, 165, 201, 314, 346
CviKI_1	RGCY	7 cut(s)	49, 93, 122, 165, 201, 314, 346
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	1 cut(s)	235
DpnII	GATC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	84, 138
Esp3I	CGTCTC	1 cut(s)	249
FaeI	CATG	1 cut(s)	211
FaiI	YATR	4 cut(s)	23, 25, 209, 240
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	2 cut(s)	312, 344
HinfI	GANTC	2 cut(s)	188, 300
HpaII	CCGG	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	138, 159
Hpy188I	TCNGA	4 cut(s)	54, 74, 174, 215
Hpy8I	GTNNAC	2 cut(s)	138, 159
Hpy99I	CGWCG	5 cut(s)	74, 160, 163, 249, 255
HpyAV	CCTTC	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	9, 32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 311
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	233
LpnPI	CCDG	4 cut(s)	84, 211, 242, 310
MalI	GATC	1 cut(s)	235
MboI	GATC	1 cut(s)	233
MboII	GAAGA	4 cut(s)	29, 144, 320, 347
MflI	RGATCY	1 cut(s)	233
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	182, 294
MmeI	TCCRAC	2 cut(s)	52, 197
MnlI	CCTC	6 cut(s)	60, 104, 134, 180, 253, 277
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	99, 311
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	3 cut(s)	85, 140, 235
NspI	RCATGY	1 cut(s)	211
PciI	ACATGT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	2 cut(s)	182, 294
PpsI	GAGTC	2 cut(s)	182, 294
PscI	ACATGT	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	85, 140, 235
PspPI	GGNCC	3 cut(s)	84, 121, 138
PsuI	RGATCY	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	68
SalI	GTCGAC	1 cut(s)	157
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	233
Sau96I	GGNCC	3 cut(s)	84, 121, 138
SchI	GAGTC	2 cut(s)	182, 294
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	7 cut(s)	172, 226, 264, 288, 316, 330, 348
SgrDI	CGTCGACG	1 cut(s)	157
SinI	GGWCC	2 cut(s)	84, 138
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	3 cut(s)	130, 192, 275
StyD4I	CCNGG	1 cut(s)	228
TaqI	TCGA	3 cut(s)	112, 158, 244
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	183
TauI	GCSGC	1 cut(s)	132
TspDTI	ATGAA	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	84, 138
XceI	RCATGY	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.