FvH4_6g36421

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
28651653 .. 28653213
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36421.t1

Sequence Viewer

Length: 492 bp
ATGGATTGCTTACGTGATATTTTCAAAGAAGTGCATGGCAAAATGTGTGTGGCGTGGGAGCTAGAAAAAGACCTTCGTGGCTCCATTGAAGACCTTCGTGGCTTCAAGTCCTTCGTGGCATTTCAAGACCTTCGTGGCTTCAACGACCTCCGTGGTGTTATCGTCCTTCGTGGCAACAAAGACCTTCGTGGCAACAAAGACCTTCGTGGCTTTGTATTACACTTGACCGTGTTCTTCAAGTGTGAAGTATTAGTTGAGGTATATGAGATAAGAGATTTGGACAAAAAGTGTGGAAAACTAAGGATGGGCTTGGGAGAGAAGAAGTTGTCTTATAAATCTGAATCCAAGGCAACATCAGAAATAGCTCGAAATGGTGGTGTTGTTGTTGTGAAGCCATGGTTGGTGGTGACGCATGCGATTTTCGTTGGTGGCGGGCTTGTGTCAACTACAGCGGCAACGATGCTTGTGTCTACAACATCGGCGTTAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.14

Weight (kDa)

9.23

Isoelectric Point (pI)

25.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AccI GTMKAC 1 cut(s) 470
AciI CCGC 2 cut(s) 432, 452
AgsI TTSAA 6 cut(s) 25, 89, 106, 125, 142, 238
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 3 cut(s) 61, 365, 489
AluI AGCT 3 cut(s) 61, 365, 489
Asp700I GAANNNNTTC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 96
BccI CCATC 1 cut(s) 298
BfaI CTAG 2 cut(s) 62, 490
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 151, 345, 395
BseDI CCNNGG 3 cut(s) 151, 345, 395
BseGI GGATG 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 2 cut(s) 432, 452
BspLI GGNNCC 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 151, 345, 395
BssT1I CCWWGG 2 cut(s) 345, 395
Bst4CI ACNGT 1 cut(s) 229
BstBAI YACGTR 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 414, 434
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 2 cut(s) 151, 395
BstF5I GGATG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 96
BtgI CCRYGG 2 cut(s) 151, 395
BtsCI GGATG 1 cut(s) 309
Cac8I GCNNGC 2 cut(s) 414, 434
CseI GACGC 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 3 cut(s) 35, 396, 413
DdeI CTNAG 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 345, 395
EcoT14I CCWWGG 2 cut(s) 345, 395
ErhI CCWWGG 2 cut(s) 345, 395
FaeI CATG 3 cut(s) 38, 399, 416
FaiI YATR 6 cut(s) 36, 262, 264, 333, 397, 414
FatI CATG 3 cut(s) 34, 395, 412
FauI CCCGC 1 cut(s) 425
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 2 cut(s) 62, 490
GluI GCNGC 1 cut(s) 453
HgaI GACGC 1 cut(s) 418
Hin1II CATG 3 cut(s) 38, 399, 416
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 1 cut(s) 341
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 2 cut(s) 444, 471
Hpy188I TCNGA 2 cut(s) 340, 358
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 2 cut(s) 444, 471
HpyAV CCTTC 7 cut(s) 83, 104, 121, 140, 176, 194, 212
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 3 cut(s) 38, 399, 416
LmnI GCTCC 2 cut(s) 58, 86
LweI GCATC 1 cut(s) 450
MaeI CTAG 2 cut(s) 62, 490
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 406
MboII GAAGA 3 cut(s) 101, 226, 331
MnlI CCTC 2 cut(s) 158, 250
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 452
NcoI CCATGG 1 cut(s) 395
NlaIII CATG 3 cut(s) 38, 399, 416
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 406
NspI RCATGY 1 cut(s) 416
PaeI GCATGC 1 cut(s) 416
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 14
PsiI TTATAA 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 1 cut(s) 453
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 1 cut(s) 447
SphI GCATGC 1 cut(s) 416
SsiI CCGC 2 cut(s) 432, 452
SspMI CTAG 2 cut(s) 62, 490
StyI CCWWGG 2 cut(s) 345, 395
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 367
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspGWI ACGGA 1 cut(s) 140
XceI RCATGY 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 93
XspI CTAG 2 cut(s) 62, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.