FvH4_7g03942

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000703
Physical Location & Seq
Forward (+)
4530302 .. 4530709
408 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03942.t1

Sequence Viewer

Length: 408 bp
ATGGAAAGAAATGCAGTGAATCAACCACCAAAGTTCGATGGTGATGATATTCCACAATGGAAGATCATGATGAGAACTTTCATCTATACTTTGGATGTGAAAGCATGGAAAGTCATTCCAACAGGTTATAAACCACCTGTTGTGAAGTCTGAAAATACCTCTGAAACTCAACTCAAACTTGTTGACTCATGGTCAACAGATGAACTTGCGCTATGCAATGCTGATTATGTTGCCAGGAATGCTCTATTCATTGTGCTTGGTGTCAAGGAGAGAAGGCGTATTCAGTATTGTGACACTGCTAATGCAGCTTGGGATATGTTGGTTACTACACATGAAGGGTGTGAGACTATCAAGATTCATAAACTTCAAATTCTTGCTGAAGAGTTTGTGTCACATCCCGACCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

136

Amino Acids

15.51

Weight (kDa)

5.59

Isoelectric Point (pI)

27.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 399
AgsI TTSAA 1 cut(s) 368
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 1 cut(s) 338
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 369
AspLEI GCGC 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 53
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 338
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 235
BmeRI GACNNNNNGTC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 100, 394
BseMI GCAATG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 63
BspHI TCATGA 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 223
BssMI GATC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 375
BstF5I GGATG 2 cut(s) 100, 394
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 239, 305
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 317
BtsCI GGATG 2 cut(s) 100, 394
BtsI GCAGTG 2 cut(s) 21, 294
BtsIMutI CAGTG 2 cut(s) 21, 294
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 211
CviAII CATG 4 cut(s) 67, 105, 189, 332
CviJI RGCY 1 cut(s) 308
CviKI_1 RGCY 1 cut(s) 308
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DriI GACNNNNNGTC 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 233
FaeI CATG 4 cut(s) 70, 108, 192, 335
FatI CATG 4 cut(s) 66, 104, 188, 331
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 2 cut(s) 107, 381
Fsp4HI GCNGC 1 cut(s) 306
GlaI GCGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 306
HhaI GCGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 70, 108, 192, 335
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 2 cut(s) 184, 195
HindII GTYRAC 2 cut(s) 184, 195
HinfI GANTC 3 cut(s) 19, 185, 355
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 2 cut(s) 184, 195
Hpy188I TCNGA 2 cut(s) 151, 163
Hpy188III TCNNGA 3 cut(s) 67, 352, 398
Hpy8I GTNNAC 2 cut(s) 184, 195
HpyAV CCTTC 2 cut(s) 267, 329
HpyCH4V TGCA 3 cut(s) 14, 216, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 305
Hsp92II CATG 4 cut(s) 70, 108, 192, 335
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 4 cut(s) 108, 150, 220, 247
Lsp1109I GCAGC 1 cut(s) 317
MaeIII GTNAC 3 cut(s) 290, 322, 390
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 73, 392
MluCI AATT 1 cut(s) 369
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 169
MseI TTAA 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 239, 305
NdeII GATC 1 cut(s) 63
NlaIII CATG 4 cut(s) 70, 108, 192, 335
NmuCI GTSAC 2 cut(s) 290, 390
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 2 cut(s) 19, 355
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PsiI TTATAA 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 63
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 235
SetI ASST 4 cut(s) 127, 139, 161, 310
Sse9I AATT 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 233
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 369
TfiI GAWTC 2 cut(s) 19, 355
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TscAI CASTG 2 cut(s) 21, 301
TseFI GTSAC 2 cut(s) 290, 390
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 2 cut(s) 290, 390
TspDTI ATGAA 5 cut(s) 70, 216, 238, 347, 348
TspRI CASTG 2 cut(s) 21, 301
XapI RAATTY 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.