spliceosomal complex assembly
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 36 - 110 | 4.4e-21 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 142 - 212 | 2.9e-16 | GAG-pre-integrase domain |
| rve | PF00665 | 226 - 330 | 3e-15 | Integrase core domain |
| SH3_retrovirus | PF25597 | 404 - 460 | 3.2e-14 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 597 - 789 | 1e-58 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1320 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1274 |
| Acc36I | ACCTGC | 1 cut(s) | 2101 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 541 |
| AccI | GTMKAC | 1 cut(s) | 671 |
| AciI | CCGC | 3 cut(s) | 402, 989, 1888 |
| AclWI | GGATC | 3 cut(s) | 711, 1554, 2102 |
| AcsI | RAATTY | 5 cut(s) | 262, 794, 914, 1250, 2339 |
| AcuI | CTGAAG | 3 cut(s) | 1461, 1473, 2304 |
| AfaI | GTAC | 3 cut(s) | 749, 1416, 1539 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1119, 1968 |
| AflII | CTTAAG | 1 cut(s) | 2138 |
| AflIII | ACRYGT | 2 cut(s) | 31, 59 |
| AgeI | ACCGGT | 1 cut(s) | 602 |
| AjnI | CCWGG | 1 cut(s) | 250 |
| AleI | CACNNNNGTG | 1 cut(s) | 788 |
| Alw21I | GWGCWC | 2 cut(s) | 128, 1383 |
| Alw26I | GTCTC | 3 cut(s) | 1363, 1594, 2182 |
| AlwI | GGATC | 3 cut(s) | 711, 1554, 2102 |
| AoxI | GGCC | 1 cut(s) | 1456 |
| ApeKI | GCWGC | 4 cut(s) | 1209, 1445, 1448, 1531 |
| ApoI | RAATTY | 5 cut(s) | 262, 794, 914, 1250, 2339 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2291, 2323 |
| AseI | ATTAAT | 2 cut(s) | 660, 1353 |
| AsiGI | ACCGGT | 1 cut(s) | 602 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1333, 1980 |
| AspS9I | GGNCC | 2 cut(s) | 411, 713 |
| AsuHPI | GGTGA | 5 cut(s) | 155, 215, 556, 802, 1583 |
| AvaII | GGWCC | 2 cut(s) | 411, 713 |
| BanII | GRGCYC | 1 cut(s) | 294 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 85, 117 |
| BbsI | GAAGAC | 1 cut(s) | 1979 |
| Bbv12I | GWGCWC | 2 cut(s) | 128, 1383 |
| BbvI | GCAGC | 4 cut(s) | 1221, 1432, 1435, 1543 |
| BccI | CCATC | 5 cut(s) | 371, 1121, 1336, 1577, 2124 |
| BceAI | ACGGC | 1 cut(s) | 530 |
| BciT130I | CCWGG | 1 cut(s) | 252 |
| BciVI | GTATCC | 1 cut(s) | 266 |
| BclI | TGATCA | 2 cut(s) | 901, 1408 |
| BcoDI | GTCTC | 3 cut(s) | 1363, 1594, 2182 |
| BfaI | CTAG | 7 cut(s) | 90, 129, 761, 777, 1785, 1812, 2172 |
| BfmI | CTRYAG | 2 cut(s) | 1225, 2094 |
| BfrI | CTTAAG | 1 cut(s) | 2138 |
| BfuAI | ACCTGC | 1 cut(s) | 2101 |
| BfuI | GTATCC | 1 cut(s) | 266 |
| BisI | GCNGC | 4 cut(s) | 1210, 1446, 1449, 1532 |
| BlsI | GCNGC | 4 cut(s) | 1211, 1447, 1450, 1533 |
| Bme1390I | CCNGG | 1 cut(s) | 252 |
| Bme18I | GGWCC | 2 cut(s) | 411, 713 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 713 |
| BmiI | GGNNCC | 3 cut(s) | 293, 978, 1809 |
| BmrFI | CCNGG | 1 cut(s) | 252 |
| BmsI | GCATC | 4 cut(s) | 805, 1246, 1666, 1683 |
| BoxI | GACNNNNGTC | 1 cut(s) | 409 |
| BpiI | GAAGAC | 1 cut(s) | 1979 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 851, 883 |
| Bpu10I | CCTNAGC | 1 cut(s) | 733 |
| BpuEI | CTTGAG | 4 cut(s) | 859, 1896, 1908, 2268 |
| BsaWI | WCCGGW | 2 cut(s) | 602, 1816 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1119, 1968 |
| Bse118I | RCCGGY | 1 cut(s) | 602 |
| Bse1I | ACTGG | 3 cut(s) | 158, 1511, 1528 |
| Bse3DI | GCAATG | 4 cut(s) | 51, 1105, 1647, 1998 |
| BseBI | CCWGG | 1 cut(s) | 252 |
| BseGI | GGATG | 5 cut(s) | 161, 1441, 2041, 2116, 2302 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1119, 1968 |
| BseMI | GCAATG | 4 cut(s) | 51, 1105, 1647, 1998 |
| BseMII | CTCAG | 2 cut(s) | 350, 473 |
| BseNI | ACTGG | 3 cut(s) | 158, 1511, 1528 |
| BseXI | GCAGC | 4 cut(s) | 1221, 1432, 1435, 1543 |
| BshFI | GGCC | 1 cut(s) | 1458 |
| BshTI | ACCGGT | 1 cut(s) | 602 |
| BsiHKAI | GWGCWC | 2 cut(s) | 128, 1383 |
| BsiSI | CCGG | 2 cut(s) | 603, 1817 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1119, 1968 |
| BsmAI | GTCTC | 3 cut(s) | 1363, 1594, 2182 |
| BsnI | GGCC | 1 cut(s) | 1458 |
| Bsp1286I | GDGCHC | 3 cut(s) | 128, 294, 1383 |
| Bsp143I | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| BspACI | CCGC | 3 cut(s) | 402, 989, 1888 |
| BspANI | GGCC | 1 cut(s) | 1458 |
| BspCNI | CTCAG | 2 cut(s) | 351, 472 |
| BspHI | TCATGA | 1 cut(s) | 2352 |
| BspLI | GGNNCC | 3 cut(s) | 293, 978, 1809 |
| BspMAI | CTGCAG | 1 cut(s) | 2098 |
| BspMI | ACCTGC | 1 cut(s) | 2101 |
| BspPI | GGATC | 3 cut(s) | 711, 1554, 2102 |
| BspQI | GCTCTTC | 1 cut(s) | 88 |
| BspTI | CTTAAG | 1 cut(s) | 2138 |
| BsrDI | GCAATG | 4 cut(s) | 51, 1105, 1647, 1998 |
| BsrFI | RCCGGY | 1 cut(s) | 602 |
| BsrI | ACTGG | 3 cut(s) | 158, 1511, 1528 |
| BssAI | RCCGGY | 1 cut(s) | 602 |
| BssMI | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| Bst2UI | CCWGG | 1 cut(s) | 252 |
| Bst4CI | ACNGT | 1 cut(s) | 411 |
| Bst6I | CTCTTC | 6 cut(s) | 88, 333, 874, 1036, 1561, 1828 |
| BstAFI | CTTAAG | 1 cut(s) | 2138 |
| BstC8I | GCNNGC | 1 cut(s) | 623 |
| BstDEI | CTNAG | 5 cut(s) | 359, 459, 470, 733, 893 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 649 |
| BstF5I | GGATG | 5 cut(s) | 161, 1441, 2041, 2116, 2302 |
| BstKTI | GATC | 7 cut(s) | 421, 706, 904, 1136, 1411, 1549, 2110 |
| BstMAI | GTCTC | 3 cut(s) | 1363, 1594, 2182 |
| BstMBI | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 77, 514, 631, 1067, 1727, 1964, 2174 |
| BstNI | CCWGG | 1 cut(s) | 252 |
| BstNSI | RCATGY | 3 cut(s) | 63, 754, 2007 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 409 |
| BstSCI | CCNGG | 1 cut(s) | 250 |
| BstSFI | CTRYAG | 2 cut(s) | 1225, 2094 |
| BstV1I | GCAGC | 4 cut(s) | 1221, 1432, 1435, 1543 |
| BstV2I | GAAGAC | 1 cut(s) | 1979 |
| BstX2I | RGATCY | 2 cut(s) | 703, 2107 |
| BstYI | RGATCY | 2 cut(s) | 703, 2107 |
| BsuI | GTATCC | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 1458 |
| BtsCI | GGATG | 5 cut(s) | 161, 1441, 2041, 2116, 2302 |
| BtsIMutI | CAGTG | 1 cut(s) | 190 |
| BveI | ACCTGC | 1 cut(s) | 2101 |
| Cac8I | GCNNGC | 1 cut(s) | 623 |
| CciI | TCATGA | 1 cut(s) | 2352 |
| Cfr10I | RCCGGY | 1 cut(s) | 602 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 713 |
| Csp6I | GTAC | 3 cut(s) | 748, 1415, 1538 |
| CspAI | ACCGGT | 1 cut(s) | 602 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 207, 242, 571, 606 |
| CviQI | GTAC | 3 cut(s) | 748, 1415, 1538 |
| DdeI | CTNAG | 5 cut(s) | 359, 459, 470, 733, 893 |
| DpnI | GATC | 7 cut(s) | 420, 705, 903, 1135, 1410, 1548, 2109 |
| DpnII | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| DraI | TTTAAA | 3 cut(s) | 267, 855, 2055 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1274 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1274 |
| Eam1104I | CTCTTC | 6 cut(s) | 88, 333, 874, 1036, 1561, 1828 |
| EarI | CTCTTC | 6 cut(s) | 88, 333, 874, 1036, 1561, 1828 |
| EciI | GGCGGA | 1 cut(s) | 417 |
| Eco24I | GRGCYC | 1 cut(s) | 294 |
| Eco47I | GGWCC | 2 cut(s) | 411, 713 |
| Eco57I | CTGAAG | 3 cut(s) | 1461, 1473, 2304 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 649 |
| EcoRI | GAATTC | 1 cut(s) | 2339 |
| EcoRII | CCWGG | 1 cut(s) | 250 |
| EcoT22I | ATGCAT | 2 cut(s) | 699, 884 |
| EcoT38I | GRGCYC | 1 cut(s) | 294 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 288, 320, 1887, 1919 |
| FauI | CCCGC | 1 cut(s) | 1895 |
| FauNDI | CATATG | 1 cut(s) | 699 |
| FbaI | TGATCA | 2 cut(s) | 901, 1408 |
| FblI | GTMKAC | 1 cut(s) | 671 |
| Fnu4HI | GCNGC | 4 cut(s) | 1210, 1446, 1449, 1532 |
| FokI | GGATG | 5 cut(s) | 148, 1448, 2048, 2103, 2309 |
| FriOI | GRGCYC | 1 cut(s) | 294 |
| Fsp4HI | GCNGC | 4 cut(s) | 1210, 1446, 1449, 1532 |
| FspBI | CTAG | 7 cut(s) | 90, 129, 761, 777, 1785, 1812, 2172 |
| GluI | GCNGC | 4 cut(s) | 1210, 1446, 1449, 1532 |
| HaeIII | GGCC | 1 cut(s) | 1458 |
| HapII | CCGG | 2 cut(s) | 603, 1817 |
| HindIII | AAGCTT | 3 cut(s) | 623, 730, 1473 |
| HpaII | CCGG | 2 cut(s) | 603, 1817 |
| HphI | GGTGA | 5 cut(s) | 155, 215, 556, 802, 1583 |
| Hpy166II | GTNNAC | 4 cut(s) | 529, 672, 783, 1516 |
| Hpy188I | TCNGA | 7 cut(s) | 462, 814, 1480, 1561, 1867, 1881, 2323 |
| Hpy188III | TCNNGA | 9 cut(s) | 90, 374, 1137, 1423, 1661, 1937, 2069, 2120, 2353 |
| Hpy8I | GTNNAC | 4 cut(s) | 529, 672, 783, 1516 |
| HpyAV | CCTTC | 5 cut(s) | 175, 281, 557, 1448, 1925 |
| HpyCH4III | ACNGT | 1 cut(s) | 411 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 77, 514, 631, 1067, 1727, 1964, 2174 |
| HpyF3I | CTNAG | 5 cut(s) | 359, 459, 470, 733, 893 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Ksp22I | TGATCA | 2 cut(s) | 901, 1408 |
| Kzo9I | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| LguI | GCTCTTC | 1 cut(s) | 88 |
| LmnI | GCTCC | 3 cut(s) | 253, 297, 982 |
| Lsp1109I | GCAGC | 4 cut(s) | 1221, 1432, 1435, 1543 |
| LweI | GCATC | 4 cut(s) | 805, 1246, 1666, 1683 |
| MaeI | CTAG | 7 cut(s) | 90, 129, 761, 777, 1785, 1812, 2172 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 5 cut(s) | 193, 203, 241, 1217, 1265 |
| MalI | GATC | 7 cut(s) | 420, 705, 903, 1135, 1410, 1548, 2109 |
| MboI | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| MfeI | CAATTG | 3 cut(s) | 320, 1374, 2232 |
| MflI | RGATCY | 2 cut(s) | 703, 2107 |
| MhlI | GDGCHC | 3 cut(s) | 128, 294, 1383 |
| MlyI | GAGTC | 6 cut(s) | 41, 325, 1284, 1364, 1783, 1814 |
| MmeI | TCCRAC | 1 cut(s) | 691 |
| Mph1103I | ATGCAT | 2 cut(s) | 699, 884 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1333, 1980 |
| MslI | CAYNNNNRTG | 1 cut(s) | 788 |
| MspCI | CTTAAG | 1 cut(s) | 2138 |
| MspI | CCGG | 2 cut(s) | 603, 1817 |
| MspR9I | CCNGG | 1 cut(s) | 252 |
| MunI | CAATTG | 3 cut(s) | 320, 1374, 2232 |
| MvaI | CCWGG | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 77, 514, 631, 1067, 1727, 1964, 2174 |
| NdeI | CATATG | 1 cut(s) | 699 |
| NdeII | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| NlaIV | GGNNCC | 3 cut(s) | 293, 978, 1809 |
| NmeAIII | GCCGAG | 1 cut(s) | 953 |
| NmuCI | GTSAC | 3 cut(s) | 193, 203, 1265 |
| NsiI | ATGCAT | 2 cut(s) | 699, 884 |
| NspI | RCATGY | 3 cut(s) | 63, 754, 2007 |
| OliI | CACNNNNGTG | 1 cut(s) | 788 |
| PagI | TCATGA | 1 cut(s) | 2352 |
| PciI | ACATGT | 1 cut(s) | 59 |
| PciSI | GCTCTTC | 1 cut(s) | 88 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1333, 1980 |
| PfeI | GAWTC | 5 cut(s) | 348, 446, 1976, 2100, 2324 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 541 |
| PinAI | ACCGGT | 1 cut(s) | 602 |
| PkrI | GCNGC | 4 cut(s) | 1211, 1447, 1450, 1533 |
| PleI | GAGTC | 6 cut(s) | 41, 324, 1283, 1364, 1782, 1814 |
| PpsI | GAGTC | 6 cut(s) | 41, 324, 1283, 1364, 1782, 1814 |
| PscI | ACATGT | 1 cut(s) | 59 |
| PshAI | GACNNNNGTC | 1 cut(s) | 409 |
| PshBI | ATTAAT | 2 cut(s) | 660, 1353 |
| PsiI | TTATAA | 1 cut(s) | 1320 |
| Psp6I | CCWGG | 1 cut(s) | 250 |
| PspGI | CCWGG | 1 cut(s) | 250 |
| PspN4I | GGNNCC | 3 cut(s) | 293, 978, 1809 |
| PspPI | GGNCC | 2 cut(s) | 411, 713 |
| PstI | CTGCAG | 1 cut(s) | 2098 |
| PsuI | RGATCY | 2 cut(s) | 703, 2107 |
| RsaI | GTAC | 3 cut(s) | 749, 1416, 1539 |
| RsaNI | GTAC | 3 cut(s) | 748, 1415, 1538 |
| RseI | CAYNNNNRTG | 1 cut(s) | 788 |
| SapI | GCTCTTC | 1 cut(s) | 88 |
| SatI | GCNGC | 4 cut(s) | 1210, 1446, 1449, 1532 |
| Sau3AI | GATC | 7 cut(s) | 418, 703, 901, 1133, 1408, 1546, 2107 |
| Sau96I | GGNCC | 2 cut(s) | 411, 713 |
| SbfI | CCTGCAGG | 1 cut(s) | 2098 |
| SchI | GAGTC | 6 cut(s) | 41, 325, 1284, 1364, 1783, 1814 |
| ScrFI | CCNGG | 1 cut(s) | 252 |
| SdaI | CCTGCAGG | 1 cut(s) | 2098 |
| SduI | GDGCHC | 3 cut(s) | 128, 294, 1383 |
| SfaNI | GCATC | 4 cut(s) | 805, 1246, 1666, 1683 |
| SfcI | CTRYAG | 2 cut(s) | 1225, 2094 |
| SinI | GGWCC | 2 cut(s) | 411, 713 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 788 |
| SmlI | CTYRAG | 5 cut(s) | 838, 1911, 1923, 2138, 2283 |
| SmoI | CTYRAG | 5 cut(s) | 838, 1911, 1923, 2138, 2283 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2098 |
| SsiI | CCGC | 3 cut(s) | 402, 989, 1888 |
| SspMI | CTAG | 7 cut(s) | 90, 129, 761, 777, 1785, 1812, 2172 |
| StyD4I | CCNGG | 1 cut(s) | 250 |
| TaaI | ACNGT | 1 cut(s) | 411 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 3 cut(s) | 482, 765, 1422 |
| TatI | WGTACW | 2 cut(s) | 747, 1537 |
| TfiI | GAWTC | 5 cut(s) | 348, 446, 1976, 2100, 2324 |
| TscAI | CASTG | 1 cut(s) | 190 |
| TseFI | GTSAC | 3 cut(s) | 193, 203, 1265 |
| TseI | GCWGC | 4 cut(s) | 1209, 1445, 1448, 1531 |
| Tsp45I | GTSAC | 3 cut(s) | 193, 203, 1265 |
| TspGWI | ACGGA | 1 cut(s) | 222 |
| TspRI | CASTG | 1 cut(s) | 190 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 541 |
| Vha464I | CTTAAG | 1 cut(s) | 2138 |
| VpaK11BI | GGWCC | 2 cut(s) | 411, 713 |
| VspI | ATTAAT | 2 cut(s) | 660, 1353 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 649 |
| XapI | RAATTY | 5 cut(s) | 262, 794, 914, 1250, 2339 |
| XbaI | TCTAGA | 1 cut(s) | 89 |
| XceI | RCATGY | 3 cut(s) | 63, 754, 2007 |
| XmiI | GTMKAC | 1 cut(s) | 671 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1333, 1980 |
| XspI | CTAG | 7 cut(s) | 90, 129, 761, 777, 1785, 1812, 2172 |
| Zsp2I | ATGCAT | 2 cut(s) | 699, 884 |