Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327135.1

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 777

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327135.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 619 bp

gaagcatggaaatagcaacaacaagtctcttctttcgacatggagtgatgatgaaactcaagaggttgaaaatatagcctttgtatcatccttctcacttgagtctgaaagtgatgaaggattctcagatgatgagaccactgtccgctgcaaacaactctatgaagcatcaaaagccacgttgcaaaaaaatgcaagtttggaagaggaagttgagttattaaaggctgagaaagacaagttggaacttatgtggaggactgctcaagtcacatgggagcaagaaagagtcaagcttgctgatgaactatgcacctcacaaagtgacaaaaattctcatatttggaagaatgaatgtgctgagctcaggaacaaagtcaagatgtttgaacttgagataagctctggaactgcatccaagttgtttagtgcaggaaaagcccataatgatacatatggacttggatattctggagaaagttctaagaatacacgattcgtgagagaaatgaatcctgcagttgagaaagatgaccaaatgacaaaagtcatcaagatcatagatccaggacaaaaggtgacaaggaacttaaataacctcagaatgtcactcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

23.32

Weight (kDa)

5.2

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	1 cut(s)	332
AdeI	CACNNNGTG	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	69, 390
AjnI	CCWGG	1 cut(s)	566
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	3 cut(s)	296, 365, 403
AluI	AGCT	3 cut(s)	296, 365, 403
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	31, 129
AlwI	GGATC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	367
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	31, 129
BfmI	CTRYAG	1 cut(s)	517
BisI	GCNGC	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	2 cut(s)	177, 423
BoxI	GACNNNNGTC	2 cut(s)	141, 546
BplI	GAGNNNNNCTC	4 cut(s)	248, 280, 387, 419
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	361
BpuEI	CTTGAG	4 cut(s)	43, 120, 250, 414
BsaI	GGTCTC	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	568
BseGI	GGATG	2 cut(s)	87, 414
BseMII	CTCAG	5 cut(s)	139, 220, 352, 380, 614
BseXI	GCAGC	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	31, 129
Bso31I	GGTCTC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	556, 563
Bsp1720I	GCTNAGC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	5 cut(s)	138, 221, 353, 379, 613
BspMAI	CTGCAG	1 cut(s)	521
BspPI	GGATC	1 cut(s)	558
BspTNI	GGTCTC	1 cut(s)	129
BssMI	GATC	2 cut(s)	556, 563
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	2 cut(s)	34, 199
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	7 cut(s)	125, 229, 361, 366, 484, 600, 612
BstF5I	GGATG	2 cut(s)	87, 414
BstKTI	GATC	2 cut(s)	559, 566
BstMAI	GTCTC	2 cut(s)	31, 129
BstMBI	GATC	2 cut(s)	556, 563
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 438
BstNI	CCWGG	1 cut(s)	568
BstPAI	GACNNNNGTC	2 cut(s)	141, 546
BstSCI	CCNGG	1 cut(s)	566
BstSFI	CTRYAG	1 cut(s)	517
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	87, 414
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	298
CviAII	CATG	3 cut(s)	6, 40, 274
CviJI	RGCY	7 cut(s)	78, 177, 228, 296, 365, 403, 441
CviKI_1	RGCY	7 cut(s)	78, 177, 228, 296, 365, 403, 441
DdeI	CTNAG	7 cut(s)	125, 229, 361, 366, 484, 600, 612
DpnI	GATC	2 cut(s)	558, 565
DpnII	GATC	2 cut(s)	556, 563
DraIII	CACNNNGTG	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	34, 199
EarI	CTCTTC	2 cut(s)	34, 199
Ecl136II	GAGCTC	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	367
FaeI	CATG	3 cut(s)	9, 43, 277
FatI	CATG	3 cut(s)	5, 39, 273
FauNDI	CATATG	1 cut(s)	455
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	74, 401
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	493
Hin1II	CATG	3 cut(s)	9, 43, 277
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	5 cut(s)	102, 121, 289, 496, 512
HphI	GGTGA	1 cut(s)	590
Hpy188I	TCNGA	3 cut(s)	107, 128, 603
Hpy188III	TCNNGA	7 cut(s)	60, 368, 380, 406, 472, 500, 554
HpyAV	CCTTC	2 cut(s)	101, 111
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	7 cut(s)	151, 185, 195, 313, 414, 432, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 438
HpyF3I	CTNAG	7 cut(s)	125, 229, 361, 366, 484, 600, 612
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	9, 43, 277
Kzo9I	GATC	2 cut(s)	556, 563
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	8 cut(s)	353, 391, 418, 457, 529, 553, 580, 599
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	2 cut(s)	177, 423
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	4 cut(s)	269, 324, 578, 607
MalI	GATC	2 cut(s)	558, 565
MboI	GATC	2 cut(s)	556, 563
MboII	GAAGA	3 cut(s)	21, 216, 359
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	111, 298
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	56, 200, 250, 326, 609
MseI	TTAA	2 cut(s)	222, 591
MspA1I	CMGCKG	1 cut(s)	148
MspR9I	CCNGG	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	174, 438
NdeI	CATATG	1 cut(s)	455
NdeII	GATC	2 cut(s)	556, 563
NlaIII	CATG	3 cut(s)	9, 43, 277
NmuCI	GTSAC	4 cut(s)	269, 324, 578, 607
PfeI	GAWTC	3 cut(s)	121, 496, 512
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	1 cut(s)	150
PleI	GAGTC	2 cut(s)	110, 297
PpsI	GAGTC	2 cut(s)	110, 297
PshAI	GACNNNNGTC	2 cut(s)	141, 546
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	566
PspGI	CCWGG	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	222, 591
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	556, 563
SchI	GAGTC	2 cut(s)	111, 298
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	9 cut(s)	67, 183, 298, 318, 367, 405, 580, 601, 618
SfaNI	GCATC	2 cut(s)	177, 423
SfcI	CTRYAG	1 cut(s)	517
SmlI	CTYRAG	4 cut(s)	58, 99, 265, 393
SmoI	CTYRAG	4 cut(s)	58, 99, 265, 393
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	121, 496, 512
Tru1I	TTAA	2 cut(s)	222, 591
Tru9I	TTAA	2 cut(s)	222, 591
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	4 cut(s)	269, 324, 578, 607
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	4 cut(s)	269, 324, 578, 607
TspDTI	ATGAA	6 cut(s)	67, 130, 178, 319, 367, 525
TspRI	CASTG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.